TCONS_00065537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065537
Unique NameTCONS_00065537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065537 ID=TCONS_00065537|Name=TCONS_00065537|organism=Clytia hemisphaerica|type=transcript|length=624bp
CTGCCACTGTGCTGCAATATCATTTTTGATTCCAtctttcacttttcttt
tccaCTCACTtttctttattgttttgatCTTTTGTAGGCTCATATCCAGA
TTATACTTTCTTCCTATTCTTTTTGTTTCACTTGTCCATGTCTCAGCTGC
CATCCCATCATGATCTGTGATAATTTCAGCACTGAGACTGTCTCCATCAT
TCACCACTTTTTGGACGAACATCAACCTGTGGTATTCTACCACAGACTGT
AAGGGCCAGATTCCTGTCTCTGCAAGTATCCCCCAGTATGGAGTTCCTTG
AGGTAGATTGAACATTTGCTTTAGGGCTTTTGACTGGATTCTTTCTAATT
TCTCCAGATCACTTTTTCTCAGTTTCGTCCACATCTCCAGGTTGTAAGTT
ATCGATGGAACTATAgtcttttggtataaaaagaTCCTTGCATCAGCTGT
TTTTGACCCAAGaactaacatgcatagccctcaaatgaaaggcccggctg
gtcattaaaatacgaaaataaatcgaaacaaaaatgctagagtagagctg
cgagcggagctgcgtatgtgtattttaatgaccagccagttCATTCAAAC
GCATAAAATATAACAGAGATACCA
Run BLAST on NCBI

protein sequence of TCONS_00065537-protein

>TCONS_00065537-protein ID=TCONS_00065537-protein|Name=TCONS_00065537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MLVLGSKTADARIFLYQKTIVPSITYNLEMWTKLRKSDLEKLERIQSKAL
KQMFNLPQGTPYWGILAETGIWPLQSVVEYHRLMFVQKVVNDGDSLSAEI
ITDHDGMAAETWTSETKRIGRKYNLDMSLQKIKTIKKSEWKRKVKDGIKN
DIAAQWQ
Run BLAST on NCBI

transcript from alignment at scaffold_44:103499..104122

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065537 ID=TCONS_00065537|Name=TCONS_00065537|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at scaffold_44:103499..104122 (Clytia hemisphaerica)
TGGTATCTCTGTTATATTTTATGCGTTTGAATGaactggctggtcattaa
aatacacatacgcagctccgctcgcagctctactctagcatttttgtttc
gatttattttcgtattttaatgaccagccgggcctttcatttgagggcta
tgcatgttagttCTTGGGTCAAAAACAGCTGATGCAAGGAtctttttata
ccaaaagacTATAGTTCCATCGATAACTTACAACCTGGAGATGTGGACGA
AACTGAGAAAAAGTGATCTGGAGAAATTAGAAAGAATCCAGTCAAAAGCC
CTAAAGCAAATGTTCAATCTACCTCAAGGAACTCCATACTGGGGGATACT
TGCAGAGACAGGAATCTGGCCCTTACAGTCTGTGGTAGAATACCACAGGT
TGATGTTCGTCCAAAAAGTGGTGAATGATGGAGACAGTCTCAGTGCTGAA
ATTATCACAGATCATGATGGGATGGCAGCTGAGACATGGACAAGTGAAAC
AAAAAGAATAGGAAGAAAGTATAATCTGGATATGAGCCTACAAAAGatca
aaacaataaagaaaAGTGAGtggaaaagaaaagtgaaagaTGGAATCAAA
AATGATATTGCAGCACAGTGGCAG

Coding sequence (CDS) from alignment at scaffold_44:103499..104122

>TCONS_00065537 ID=TCONS_00065537|Name=TCONS_00065537|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_44:103499..104122 (Clytia hemisphaerica)
atgttagttCTTGGGTCAAAAACAGCTGATGCAAGGAtctttttatacca
aaagacTATAGTTCCATCGATAACTTACAACCTGGAGATGTGGACGAAAC
TGAGAAAAAGTGATCTGGAGAAATTAGAAAGAATCCAGTCAAAAGCCCTA
AAGCAAATGTTCAATCTACCTCAAGGAACTCCATACTGGGGGATACTTGC
AGAGACAGGAATCTGGCCCTTACAGTCTGTGGTAGAATACCACAGGTTGA
TGTTCGTCCAAAAAGTGGTGAATGATGGAGACAGTCTCAGTGCTGAAATT
ATCACAGATCATGATGGGATGGCAGCTGAGACATGGACAAGTGAAACAAA
AAGAATAGGAAGAAAGTATAATCTGGATATGAGCCTACAAAAGatcaaaa
caataaagaaaAGTGAGtggaaaagaaaagtgaaagaTGGAATCAAAAAT
GATATTGCAGCACAGTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041068XLOC_041068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065537-exon-scaffold_44-1491911889:103499..104122TCONS_00065537-exon-scaffold_44-1491911889:103499..104122Clytia hemisphaericaexon
TCONS_00065537-exon-scaffold_44-1510915933:103499..104122TCONS_00065537-exon-scaffold_44-1510915933:103499..104122Clytia hemisphaericaexon
TCONS_00065537-exon-scaffold_44-1575043694:103499..104122TCONS_00065537-exon-scaffold_44-1575043694:103499..104122Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065537-proteinTCONS_00065537-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:103499..104122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.512129	0.505322	1.11986	0.714174	0.668267	1.01771	0.439636	0.207094	0.720395	0.364756	0.606279	0.615469	0.513086	0.310524	0.14805	0.317484	0.195578	0.334388	0.350917	0.424206	0.517806	0.416991	0.196473	0.178228	1.0105	0.644802	0.117222	0.375307	0.288139	0.281199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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