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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065426 ID=TCONS_00065426|Name=TCONS_00065426|organism=Clytia hemisphaerica|type=transcript|length=1586bp
GCCTTGTCTGACTTTCTTGAAGGAGTGACTGTTGGTGACTGGTTGTCAAT
ATTATATAGATATATAGCTAGAGGACGTTTATCTGATTGCGATAGCTATT
TTTGCAATTGAAAACAGAATTTTTTATGCATTGAAATTGAAAGTTATGTA
TTTGAAAGGTGTCCATTGCTGACCGTTCGTCGATATACAGTGACCCCGCg
aggggcactcaagaatcaAAGCGAATAAACAATTAAACAACAATGGATCA
TACATCATCATTCCTTGACACGGATGACATCATCTCACCGGAAACCAAAC
CGCCGCGTGCTCCAAAATGCGCACGCTGCCGCAACCACGGTGTGGTATCG
TGGCTCAAAGGTCATAAGCGGTTCTGTAAATGGAAGGATTGTCCGTGTAG
CAAATGTGTTCTGATTACTGAACGGCAACGTGTGATGGCCGCTCAAGTGG
CATTGAGACGACAGCAAGCTCAAGAAGAAAATAACCAAGatgcaaaatta
aaaatcaattataaAAGCTTTCATAGGAGTGAAAGTGAAGATGGAAGCCA
ACCTGTTGTCCGTGGTGGTCAAAGACATGACTCCTCGTCGGACAATATGA
GTACATCTACCACATCTTCTTCATTACAATCACCAAAACACTCTCCCAAC
CCCATCATCAACCGCCAACCATCAGTTACAGAACAACCTGAAAACAACGA
TGTTGACAATAACCAACCAATCACAAACAAATCATCCTCAAAAACAATCA
AATCTACACGCAGTGCTTTTAACACGTGTTCAAACTCCAATAACAATAAA
TCTCGTTATCAGGCCTCCAAAAAAGATCCATTCGAAGTGATCACTAAAAT
ATTCCCTGATTTTGATTCGTACACACTTGCAGAAACTCTACAAAATTGTC
ATGGCAACATATACCTTGCAGTTGAAGCTCTAGTTGCGCTCAAAGATAAA
ACCAGAGTTGGCGTCCTTCCGCCTAGGGTGTACCACCCAGTATATCTACC
GCACCCTTACAGGCACCAGGTACCACCTTATGAAAGATATCCGTACAAAC
CACCAAATTATATACCACACCCGGCATATTTTCGGACTTCTGCAAAACCT
CCTCATACATCATGCACAGATATTGACTGTTCTTGTTACAAGCACCATAT
CAAAGATAAGAAACAATCTTATCTTGAGACAAGGAAACGTTCCTTAGATG
CTTTAATGATGTCGCCGAAACTTCGGGATGCTCACGCCGATTATCTGACG
TATCTCAAGTCCGTCAAAGAACTTAAGAGAATTGAGAAAAGTAACCCAGT
TTTGTATGTTAATGGTAAAAAACCTGTAACTGCAATGTAATGCTTTTTCT
ATGGAATTTTAAGACCCTTAAATTTCTCATAAATCTGTAatactttttgt
tatttttttagttGGTTATTAGATGAAATGCTAAAAAGCTTCCTTGTAGT
AAGGAATTCTGTTTGTAAGTTGAGTGTagagattttttatttctttgatg
ATTGTTGGTATGACAAGGTTTGCTtcatctttcattttattttgatttcc
tGATAGGTATACTTCTCTTAAGAACCTGATCTAACC Run BLAST on NCBI transcript from alignment at scaffold_439:401633..406767- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065426 ID=TCONS_00065426|Name=TCONS_00065426|organism=Clytia hemisphaerica|type=transcript|length=5135bp|location=Sequence derived from alignment at scaffold_439:401633..406767- (Clytia hemisphaerica)
GCCTTGTCTGACTTTCTTGAAGGAGTGACTGTTGGTGACTGGTTGTCAAT
ATTATATAGATATATAGCTAGAGGACGTTTATCTGATTGCGATAGCTATT
TTTGCAATTGAAAACAGAATTTTTTATGCATTGAAATTGAAAGTTATGTA
TTTGAAAGGTGTCCATTGCTGACCGTTCGTCGATATACAGTGACCCCGCG
AGGGGCACTCAAGGTAAATTACCTACCATACGTGCGGCCCTTAAGGGTCC
CTTTTCTAAGCTTCCCAAAGTGCACTGTAAGGGTCGAAATCAGCAAAGAT
GAGAAAAAGTACACTATAAGGGTGAACATTTTGAAAATCTGACCAAATCT
TCAAGAAAGTGCACTGTAAGGGTACTAGATTTTTCACCTAAATTTACTCA
AATTTGGCTAAATTTTCTCTGCACTGAAGAATCCGATTTCAAAGGCCTAA
ATTTAGTTTGGTTTGTACGTATAGTCGTTTTTGAATCAATCAAGTGCCCC
CCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCC
CCCGGACAGTGACTGGAAAATTCATATGATTTCGTTTTACAATCTTAAGA
TTAGTTTAAGATGCCGATACTCCAAATTCCTTCACATATCAGTGTTTGTG
ATGAAGAGGGCGAAAGTTAAGACAAGAAAAATATACTCAATCTTTTTATT
CACCAGATCGACAATTTCACTATCGAAATCTGGCATTTGATTTTACGCTA
CTGTGCCAAATAATTTTAAAGATAGACCGATTTTCTGGTGTCTGGGAAAG
TTCTGATTACTTCATTTCGCTGGCAATTAGCGGTTAAACCGCGAAAAGTT
AAATCGCAAAAATCCTCCTCTCTTTCCTATGCTAAAAGAAAGAGAAATTT
TTCAGACCGCTAAATTGTTCTTTAAATTACAAATCCTTAAAAGTCGGGAT
TTCATTATCAATTTAGAGACTGTCAGTAAACCAGCTTAAACTGTGTCTTT
AGCCTACTGATGTAATGTAGATTTTTGGCTATAAATACGTGAATTTTCAT
TGGAATTCTTCGACAGATATATCCATCCTTAGACAAATTGTGAATGATTT
ATTTTGTGTATTGTCTAGTTAATTCCTGGCCATTGCCATCATTGCTACTA
ATTTTCTAGTAAAGCTAAAAAGCCCGATAATAACAGATATATAACGCATG
GATAGAATAGATATTGAGCCGAATTTATGTTCTCTGGAACAAAATAAAAG
CGAGTCAAGTTTTGTCATCAAAATTGGTACCTTGTGACGTTTTGATTTAT
ATTTTCATTTTTCTATTCTTCTTTGAAGATTTTCAAATCTTTCTGGATCT
TCTCGTTGTGTACTTTTGATTAAATGGATATATGTGAGACTTTTCAATCA
TTTTCTTTTCTTAACATAAATCTTAACTGAACTCAAAGAATCTTAACTAA
CAAATCTTTCCTACCGCAAGAGATAAAGCTTGGGTTCAGAGGCCACAAGA
CAATTAAACTGACGCCAAGAGAATTTGATTTTCATTCCTTGTTTTGACCA
AATCGTCATTTTTTCTTGTTTTTTTTATGAAATACATCGGCAGTTTATTC
TGTCATGATGCGATGAAGAATCCAAAAATCCAAAAAAACAATTTTGGATG
AGTATTAAATCAGATTTTTTATTCATTTCGTGACAATCTAATTGGACTTT
GATATAAAGTCCTAGATTTTGTTTAAGTTTGAGTTTTTCTTCTTTTTCGA
CCGTGATTCTTTCAAATTTTTGTTTGATTTTGATTTAAAGTCTTATTTTT
CCCTAAATTTGTTAATCTTTAAGAGTCTTAACGTGAAAAATAGATATATA
CAACACAAAATAATACGCTGGTCCCCTTTTTTGATAAAGCATAATCTATT
GTTTACAAATAATAGGGAAAAGGGGACAATACTTTTAGTCTTCTCTGTTT
CTTATTTCTATTGTGATACTAAAAGATATATAAATGATTNGTTCATTGGA
ATTCTTCGACAGATATATCCATCCTTAGACAAATTGTGAATGATTTATTT
TGTGTATTGTCTAGTTAATTCCTGGTCATTGCCATCATTGCTACTAATTT
TCTAGTAAAGCAAAAAAGCCCGATAATAACAGATATATAACGCATCCGGA
TAGAATAGATATTGAGCCGAATTTATGTTCTCTGGAACAAAATGAAAGCG
AGTCAAGTTTTGTCATCAAAATTGGTACCTTGTGACGTTTTGATTTATAT
TTTCATTTTTCTATTCTTCTTTGAAGATTTTCAAATCTGTCTGGATCTTC
CCGTTGTGGACTTTTGATTAAATGGATATATGTGAGACTTTTCAATCATT
TTCTTTTCTTAACATAAATCTTAACTGAACTCAAAGAATCTTAACTAACA
AATCTTTCCTACCGCAAGAGATAAAGCTTGGGTTCAGAGGCCACAAGACA
ATTAAACTGACGCCAAGAGAATTTGATTTTCATTCCTTGTTTTGACCAAA
TCGTCATTTTTTCTTGTTTTTTTATGAAATACATCGGCAGTTTATTCTGT
CATGATGCGATGAAGAATCCAAAAATCCAAAAAAACAATTTTGGATGAGT
ATTAAATCAGATTTTTTATTCATTTCGTGACAATCTAATTGGACTTTGAT
ATAAAGTCCTAGATTTTGTTTAAGTTTGAGTTTTTCTTCTTTTTCGACCG
TGATTCTTTCAAATTTTTGTTTGATTTTGATTTAAAGTCTTATTTTTCCC
TAAATTTGTTAATCTTTAAGAGTCTTAACGTGAAAAATAGATATATACAA
CACAAAATAATACGCTGGTCCCCTTTTTTGATAAAGCATAATCTATTGTT
TACAAATAATAGGGAAAAGGGGACAATACTTTTAGTCTTCTCTGTTTCTT
ATTTCTATTGTGATACTAAAAGATATATAAATGATTTTAGTAACATTTTT
GACACTTTTTTATTTTGAACAATCTTGTGAACTTGAATTTCAAGTTGTGG
AAACAGTTTTTTTATTCAAAGCATGACAATGATTTTAATGACTTTGGTGT
CCTGTCGGTCCTAAACGTCCGAAGAAACGAAGGTTTCTCGACACTCTAAA
GCGGGAAACATAGGCCTGGAAACGCTAGAGCTCGGAACAGTTATGACTGA
TCGTAAACTGTGGAGAGAGGGTTATTGCTTGTTTCCGATGATGGTGATGA
ATGACTTTGATGTTTTTAAATTTGAATTCAAAATTTCTTCATTTTCAGAA
TCAAAGCGAATAAACAATTAAACAACAATGGATCATACATCATCATTCCT
TGACACGGATGACATCATCTCACCGGAAACCAAACCGCCGCGTGCTCCAA
AATGCGCACGCTGCCGCAACCACGGTGTGGTATCGTGGCTCAAAGGTCAT
AAGCGGTTCTGTAAATGGAAGGATTGTCCGTGTAGCAAATGTGTTCTGAT
TACTGAACGGCAACGTGTGATGGCCGCTCAAGTGGCATTGAGACGACAGC
AAGCTCAAGAAGAAAATAACCAAGATGCAAAATTAAAAATCAATTATAAA
AGCTTTCATAGGAGTGAAAGTGAAGATGGAAGCCAACCTGTTGTCCGTGG
TGGTCAAAGTAAGATGTCTTATCATATTGCCAATTCAATTACAGAGGAGT
CTCTTCGTCTCTTTAACTCGAACCTCTATTACTCGAATGTCTCCGTAATT
CGAACTAGTTTTATGGTCCCTTTAGTTAACAATGTCTTATAAACCTTACT
CCATAAGTCGAAAGTTCCTTAACTCGAACAAACTTGTATTCCCCGTGCGT
GCTCAAGTTATGGAGACTCCAATGTACTTAAGGTTTCAAATCGGATGCCC
TGCATGTAGTTCTATTACGGTAATTTATGTTTGCACCAATAATTAAATAA
GTTCAAAATAATGAGAATAGTTTCCACGGATATATTATTGAATCAGATTT
CTGACAGACGAGAAAGTTCGTGATTAAAATTTTAAACAGTTTTAAAGCAC
CACTTTAAAATCGTGAATACAACGACGGTTTAGAACGAATTGAGGTAGTG
CTAGAATCGTCTTTTACTCAAAATCCAAACAAATTTACACATAACTTAAG
GGTATAACATTATTCTATGTAGGACATGACTCCTCGTCGGACAATATGAG
TACATCTACCACATCTTCTTCATTACAATCACCAAAACACTCTCCCAACC
CCATCATCAACCGCCAACCATCAGTTACAGAACAACCTGAAAACAACGAT
GTTGACAATAACCAACCAATCACAAACAAATCATCCTCAAAAACAATCAA
ATCTACACGCAGTGCTTTTAACACGTGTTCAAACTCCAATAACAATAAAT
CTCGTTATCAGGCCTCCAAAAAAGATCCATTCGAAGTGATCACTAAAATA
TTCCCTGATTTTGATTCGTACACACTTGCAGAAACTCTACAAAATTGTCA
TGGCAACATATACCTTGCAGTTGAAGCTCTAGTTGCGCTCAAAGATAAAA
CCAGAGTTGGCGTCCTTCCGCCTAGGGTGTACCACCCAGTATATCTACCG
CACCCTTACAGGCACCAGGTACCACCTTATGAAAGATATCCGTACAAACC
ACCAAATTATATACCACACCCGGCATATTTTCGGACTTCTGCAAAACCTC
CTCATACATCATGCACAGATATTGACTGTTCTTGTTACAAGCACCATATC
AAAGATAAGAAACAATCTTATCTTGAGACAAGGAAACGTTCCTTAGATGC
TTTAATGATGTCGCCGAAACTTCGGGATGCTCACGCCGATTATCTGACGT
ATCTCAAGTCCGTCAAAGAACTTAAGAGAATTGAGAAAAGTAACCCAGTT
TTGTATGTTAATGGTAAAAAACCTGTAACTGCAATGTAATGCTTTTTCTA
TGGAATTTTAAGACCCTTAAATTTCTCATAAATCTGTAATACTTTTTGTT
ATTTTTTTAGTTGGTTATTAGATGAAATGCTAAAAAGCTTCCTTGTAGTA
AGGAATTCTGTTTGTAAGTTGAGTGTAGAGATTTTTTATTTCTTTGATGA
TTGTTGGTATGACAAGGTTTGCTTCATCTTTCATTTTATTTTGATTTCCT
GATAGGTATACTTCTCTTAAGAACCTGATCTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065426-exon-scaffold_439-1575043694:406555..406767 | TCONS_00065426-exon-scaffold_439-1575043694:406555..406767 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1575043694:403160..403519 | TCONS_00065426-exon-scaffold_439-1575043694:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1575043694:401633..402645 | TCONS_00065426-exon-scaffold_439-1575043694:401633..402645 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1510915933:406555..406767 | TCONS_00065426-exon-scaffold_439-1510915933:406555..406767 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1510915933:403160..403519 | TCONS_00065426-exon-scaffold_439-1510915933:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1510915933:401633..402645 | TCONS_00065426-exon-scaffold_439-1510915933:401633..402645 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1491911889:406555..406767 | TCONS_00065426-exon-scaffold_439-1491911889:406555..406767 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1491911889:403160..403519 | TCONS_00065426-exon-scaffold_439-1491911889:403160..403519 | Clytia hemisphaerica | exon |
| TCONS_00065426-exon-scaffold_439-1491911889:401633..402645 | TCONS_00065426-exon-scaffold_439-1491911889:401633..402645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:401633..406767 - |
Blast
BLAST of TCONS_00065426 vs. Swiss-Prot (Human)
Match: DMRT3 (Doublesex- and mab-3-related transcription factor 3 OS=Homo sapiens GN=DMRT3 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.614e-16 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query: 288 PETKPPRAP-----KCARCRNHGVVSWLKGHKRFCKWKDCPCSKCVLITE 422
P ++PPRAP KCARCRNHGV+SWLKGHKR+C++KDC C KC+LI E
Sbjct: 14 PVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIE 63
The following BLAST results are available for this feature:
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