TCONS_00064976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064976
Unique NameTCONS_00064976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064976 ID=TCONS_00064976|Name=TCONS_00064976|organism=Clytia hemisphaerica|type=transcript|length=884bp
CTATTTAGTGCCTCCCTCCACCAATAAATTTGGCAGTCGAGTTTCAAATG
TTATCTAATTTttgttccttttcttcttcattttttgttggtaagaaaag
aaagaagtttCGTTTTCGTACTTATGTTGTTTGGTTTTTCCCATCTCAAG
GAAAGCTTTGCTCATGAAGAAATCTCTGCAACCACTTGTTTTTGCAGGAT
GTGAAACTAAGAATGTTGGCGTGTAAGTACAATGGTCATTCCACATCAAA
AAATGTTGTGGTGCGTGCAAAGGCCTTCCACCTGCTTTCTTCACTAAATG
TCCAATGTACGCGTCGTCGATCTTCAATGGTGTCTCCCAATCGAAATGAG
GGATCATTCGTCCGATGATGGATTGTGACAAGAAGTAGCCACCACCACTG
CAATACGCATCATACGTTTTGTGCGGCCATTCTTTAAGTGATACTCCATA
CCGTCCTTTATTCCTTTCAGGAGGTTGACCACGCATAGCATGACCAATAA
AATGCTCGTTTGACCAGCCATGTTGAAGTATGTGCATCACTCGATCAACG
TGGATGAAAGTGTCATCATCTGTtttcaaaatgaatttaaaCTTGAACTT
TTGGTAAACCCATTGCAGGGCCACCATAACTTTTAGTGATAGTTTGTGGA
AGTCCTCGGGAACGTCGAGAATGAGCAGGTCTTTATAACGCTCAGCTTCT
TTTTGCAATTGAGCACTGATCACAGCTGCATCGTGTTTCATCGAACCCAC
GTTGAAAATCACTTTCCAATTCTTTTTATTCAACCAAGTCGTTCCCAGAC
CCCATGAACTTCGTATCCAAGTTCTTCGTTCGAAGTGTTTGGCAAATGAT
GTTACCagaaagatgacgtcatattctTCGTTAC
Run BLAST on NCBI

protein sequence of TCONS_00064976-protein

>TCONS_00064976-protein ID=TCONS_00064976-protein|Name=TCONS_00064976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
NEEYDVIFLVTSFAKHFERRTWIRSSWGLGTTWLNKKNWKVIFNVGSMKH
DAAVISAQLQKEAERYKDLLILDVPEDFHKLSLKVMVALQWVYQKFKFKF
ILKTDDDTFIHVDRVMHILQHGWSNEHFIGHAMRGQPPERNKGRYGVSLK
EWPHKTYDAYCSGGGYFLSQSIIGRMIPHFDWETPLKIDDAYIGHLVKKA
GGRPLHAPQHFLMWNDHCTYTPTFLVSHPAKTSGCRDFFMSKAFLEMGKT
KQHKYENETSFFSYQQKMKKKRNKN
Run BLAST on NCBI

transcript from alignment at scaffold_427:228054..228937

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064976 ID=TCONS_00064976|Name=TCONS_00064976|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at scaffold_427:228054..228937 (Clytia hemisphaerica)
GTAACGAagaatatgacgtcatctttctGGTAACATCATTTGCCAAACAC
TTCGAACGAAGAACTTGGATACGAAGTTCATGGGGTCTGGGAACGACTTG
GTTGAATAAAAAGAATTGGAAAGTGATTTTCAACGTGGGTTCGATGAAAC
ACGATGCAGCTGTGATCAGTGCTCAATTGCAAAAAGAAGCTGAGCGTTAT
AAAGACCTGCTCATTCTCGACGTTCCCGAGGACTTCCACAAACTATCACT
AAAAGTTATGGTGGCCCTGCAATGGGTTTACCAAAAGTTCAAGtttaaat
tcattttgaaaACAGATGATGACACTTTCATCCACGTTGATCGAGTGATG
CACATACTTCAACATGGCTGGTCAAACGAGCATTTTATTGGTCATGCTAT
GCGTGGTCAACCTCCTGAAAGGAATAAAGGACGGTATGGAGTATCACTTA
AAGAATGGCCGCACAAAACGTATGATGCGTATTGCAGTGGTGGTGGCTAC
TTCTTGTCACAATCCATCATCGGACGAATGATCCCTCATTTCGATTGGGA
GACACCATTGAAGATCGACGACGCGTACATTGGACATTTAGTGAAGAAAG
CAGGTGGAAGGCCTTTGCACGCACCACAACATTTTTTGATGTGGAATGAC
CATTGTACTTACACGCCAACATTCTTAGTTTCACATCCTGCAAAAACAAG
TGGTTGCAGAGATTTCTTCATGAGCAAAGCTTTCCTTGAGATGGGAAAAA
CCAAACAACATAAGTACGAAAACGaaacttctttcttttcttaccaacaa
aaaatgaagaagaaaaggaacaaAAATTAGATAACATTTGAAACTCGACT
GCCAAATTTATTGGTGGAGGGAGGCACTAAATAG

Coding sequence (CDS) from alignment at scaffold_427:228054..228937

>TCONS_00064976 ID=TCONS_00064976|Name=TCONS_00064976|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_427:228054..228937 (Clytia hemisphaerica)
AACGAagaatatgacgtcatctttctGGTAACATCATTTGCCAAACACTT
CGAACGAAGAACTTGGATACGAAGTTCATGGGGTCTGGGAACGACTTGGT
TGAATAAAAAGAATTGGAAAGTGATTTTCAACGTGGGTTCGATGAAACAC
GATGCAGCTGTGATCAGTGCTCAATTGCAAAAAGAAGCTGAGCGTTATAA
AGACCTGCTCATTCTCGACGTTCCCGAGGACTTCCACAAACTATCACTAA
AAGTTATGGTGGCCCTGCAATGGGTTTACCAAAAGTTCAAGtttaaattc
attttgaaaACAGATGATGACACTTTCATCCACGTTGATCGAGTGATGCA
CATACTTCAACATGGCTGGTCAAACGAGCATTTTATTGGTCATGCTATGC
GTGGTCAACCTCCTGAAAGGAATAAAGGACGGTATGGAGTATCACTTAAA
GAATGGCCGCACAAAACGTATGATGCGTATTGCAGTGGTGGTGGCTACTT
CTTGTCACAATCCATCATCGGACGAATGATCCCTCATTTCGATTGGGAGA
CACCATTGAAGATCGACGACGCGTACATTGGACATTTAGTGAAGAAAGCA
GGTGGAAGGCCTTTGCACGCACCACAACATTTTTTGATGTGGAATGACCA
TTGTACTTACACGCCAACATTCTTAGTTTCACATCCTGCAAAAACAAGTG
GTTGCAGAGATTTCTTCATGAGCAAAGCTTTCCTTGAGATGGGAAAAACC
AAACAACATAAGTACGAAAACGaaacttctttcttttcttaccaacaaaa
aatgaagaagaaaaggaacaaAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040738XLOC_040738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064976-proteinTCONS_00064976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064976-exon-scaffold_427-1491911889:228054..228937TCONS_00064976-exon-scaffold_427-1491911889:228054..228937Clytia hemisphaericaexon
TCONS_00064976-exon-scaffold_427-1510915933:228054..228937TCONS_00064976-exon-scaffold_427-1510915933:228054..228937Clytia hemisphaericaexon
TCONS_00064976-exon-scaffold_427-1575043694:228054..228937TCONS_00064976-exon-scaffold_427-1575043694:228054..228937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:228054..228937 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105119	0.102508	0	0	0.212639	0.05601	0.202721	0.253047	2.52459	2.02988	4.41974	2.52032	15.9049	18.7318	12.5648	6.59784	3.51161	4.489	7.20749	5.32041	7.31774	7.43612	3.25425	5.15013	7.27959	11.785	1.36932	0.769147	0	0.118873
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
[Close]
BLAST of TCONS_00064976 vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.557e-24
Identity = 63/205 (30.73%), Postives = 102/205 (49.76%), Query Frame = -3 
Query:  265 VIFLVTSFAKHFERRTWIRSSWGLGTTWLNKKNWKVIFNVGSMKHDAAVISAQLQKEAERYKDLLILDVPEDFHKLSLKVMVALQWVYQKF-KFKFILKTDDDTFIHVDRVMHILQHGW--SNEHFIGHAMRGQPPERN-KGRYGVSLKEWPHKTYDAYCSGGGYFLSQSIIGRMIPHFDWETPLKIDDAYIGHLVKKAGGRPLH 867
            ++  + S   H ERR  IRS+WG    W   +  K++F +G     +A  +  L  E+  + D+L  D  EDF  L+LK +   +WV     +  F+LK DDD F+HV  V+  L  GW  + +  +G  +R   P RN K +Y +    +    Y  Y  GGGY +S++ + R+    +      IDD ++G  +++ G  P+H
Sbjct:  120 LLLAIKSQPGHVERRAAIRSTWGRVGGWARGRQLKLVFLLGVA--GSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLD-GWDPAQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMH 321
The following BLAST results are available for this feature:
BLAST of TCONS_00064976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GN41.557e-2430.73N-acetyllactosaminide beta-1,3-N-acetylglucosaminy... [more]
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