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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064201 ID=TCONS_00064201|Name=TCONS_00064201|organism=Clytia hemisphaerica|type=transcript|length=3282bpRun BLAST on NCBI transcript from alignment at scaffold_41:294237..298468- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064201 ID=TCONS_00064201|Name=TCONS_00064201|organism=Clytia hemisphaerica|type=transcript|length=4232bp|location=Sequence derived from alignment at scaffold_41:294237..298468- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064201 vs. Swiss-Prot (Human)
Match: THS7B (Thrombospondin type-1 domain-containing protein 7B OS=Homo sapiens GN=THSD7B PE=2 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 3.609e-29 Identity = 153/614 (24.92%), Postives = 243/614 (39.58%), Query Frame = -1
Query: 7 KTFRTKFSIHHRNVSCVDNKG---LICHVTDSTMALSHRLQVGDQDCLHGNWSPWSPCLKD--GSHVMVRKQRRSRHLLAYPLGKGKPCNTTTEERSCNVNTRLVTE--HFVWFSGNWSSCYT-------DKSSNFVEEKCQIYKKNRPVFCTR--------LGDETLTPLSNLKCASVVMPKEEELCHVVCSQVSCFYSDWSEWKNCSH----------GYIKRNRTLLH---GSSHACILTEQKRSCNSERALWERVTDGVCKLYGGDICGEGVIDSKVNCKME-GKTVDESNCDRMTKPLTSSTCSVPCKPGHTLKCVLSTWSKWSIC--------QNGVKNRTRILL----HGNQNC-----LKVSRTENKKCYTKEYFYIPPSWGVCE------IMNQSIG------CGKGEQTRNFQCVENLIGNVVNESYCLERLNYTQPIETRSCYVC--NDCIMTPWSQWEPDCSAICAPSRAQGSTSTQRRRYILSQHSA----KCNESLIETKTCPP---CLDYHWVTEKWELCTH-DNAPMMGPQTEIMVMRNGYQIRDVYCSDGPNIVPDSL-CHDEK---PIESRECHIDWLNTCQLEPWSEWKECDKPC 1611
K++ + R VSC + G ++ + L+ + + +DC WS WSPC K ++ + RSR++ +G GK C E+ +C V L+ + + W + W C D + C + R V+C + E P+ C P +LC++ CS C S WS W C H G+ R R +L G + C + C ++G+C G CG G K C+ + G+ V S C + P +C +PC+ + CVLS W++WS C +G + R+R +L G + C L+ R N + ++ P WG C +N +IG CG G QTR CV++ +G V+ + + T+P R C++ DCI+T +S+W P C +C +A +T Q R I+ Q +A +C ++L E + C C Y W +KW C + G G Q R V C N + + C + P+ +EC + C WS++ C C
Sbjct: 291 KSWAIEIGYQTRQVSCTRSDGQNAMLSLCLQDSFPLTVQSCIMPKDCETSQWSSWSPCSKTCRSGSLLPGFRSRSRNVKHMAIGGGKECPELLEKEACIVEGELLQQCPRYSWRTSEWKECQVSLLLEQQDPHWHVTGPVCGGGIQTREVYCAQSVPAAAALRAKEVSRPVEKALCVGPA-PLPSQLCNIPCS-TDCIVSSWSAWGLCIHENCHDPQGKKGFRTRQRHVLMESTGPAGHCPHLVESVPCEDPMCYRWLASEGICFPDHGK-CGLGHRILKAVCQNDRGEDVSGSLCP-VPPPPERKSCEIPCR----MDCVLSEWTEWSSCSQSCSNKNSDGKQTRSRTILALAGEGGKPCPPSQALQEHRLCNDHSCMQLHWETSP-WGPCSEDTLVTALNATIGWNGEATCGVGIQTRRVFCVKSHVGQVMTKRC----PDSTRPETVRPCFLPCKKDCIVTAFSEWTP-CPRMC---QAGNATVKQSRYRIIIQEAANGGQECPDTLYEERECEDVSLCPVYRWKPQKWSPCILVPESVWQGITGSSEACGKGLQTRAVSCISDDNRSAEMMECLKQTNGMPLLVQECTVPCREDCTFTAWSKFTPCSTNC 887 HSP 2 Score: 89.3521 bits (220), Expect = 9.239e-18 Identity = 149/655 (22.75%), Postives = 233/655 (35.57%), Query Frame = -1
Query: 7 RDKKTFRTKFSIHHRNVSCVD--NKGLICHVTDSTMALSHRLQVG-----DQDCLHGNWSPWSPCLKDGSHVMVRKQRRSRHLLAYPLGKGKPCNTTTEERSCN--VNTRLVTEHFVWF--SGNWSSC-----------------YTDKSSNFVEEKCQIYK--------------KNRPVFCTRL-GDETLTPL-----SNLKCASVVMPKEEELCHVVCSQVSCFYSDWSEWKNCSH---------GYIKRNRTLLH---GSSHACILTEQKRSCNSERAL--------WERVTDGVCKL------------YGGDICGEGVIDSKVNCKMEGKTVDESNCDRMTK-----------PLTSSTCSVPCKPGHTLKCVLSTWSKWSIC----------QNGVKNRTRILLHGNQNCLK--VSRTENKKCYTKEYFYIPPSWGVCEIMNQSIGCGKGEQTRNFQCVENLIGNVVNESYCLERLNYTQPIETRSCYV-CN-DCIMTPWSQWEPDCSAICAPSRAQGSTSTQRRRYILSQHSAK---CNESLIETKTCP--PCLDYHWVTEKWELCTHDNA-----PMMGPQTEIMVMRNGYQIRDVYC--SDGPNIVPDSLCHDEKPIESRECHIDWLNTCQLEPWSEWKECDKPC 1620
R + + + HR V C+ N+ ++ + AL + +DC+ + PWS C K + Q R+R ++A PL G C TE R+C+ ++ L E + + G WS C + S+ V K Q YK + R V CTR G + L L S +MPK+ C S WS W CS G+ R+R + H G C +K +C E L W C++ G +CG G+ +V C +++ PL S C++PC + C++S+WS W +C + G + R R +L + E+ C + S G+C CG G + C +N G V+ S C P E +SC + C DC+++ W++W CS C+ + G + R L+ K +++L E + C C+ HW T W C+ D +G E G Q R V+C S ++ +P R C + C + +SEW C + C
Sbjct: 127 RTAECVTAQHGLQHRMVRCIQKLNRTVVANEICEHFALQPPTEQACLIPCPRDCVVSEFLPWSNCSKGCGKKL---QHRTRAVIAPPLFGGLQCPNLTESRACDAPISCPLGEEEYTFSLKVGPWSKCRLPHLKEINPSGRTVLDFNSDSNERVTFKHQSYKAHHHSKSWAIEIGYQTRQVSCTRSDGQNAMLSLCLQDSFPLTVQSCIMPKD------------CETSQWSSWSPCSKTCRSGSLLPGFRSRSRNVKHMAIGGGKECPELLEKEACIVEGELLQQCPRYSWRTSEWKECQVSLLLEQQDPHWHVTGPVCGGGIQTREVYCAQSVPAAAALRAKEVSRPVEKALCVGPAPLPSQLCNIPC----STDCIVSSWSAWGLCIHENCHDPQGKKGFRTRQRHVLMESTGPAGHCPHLVESVPCEDPMCYRWLASEGIC--FPDHGKCGLGHRILKAVC-QNDRGEDVSGSLC----PVPPPPERKSCEIPCRMDCVLSEWTEWS-SCSQSCSNKNSDGKQTRSRTILALAGEGGKPCPPSQALQEHRLCNDHSCMQLHWETSPWGPCSEDTLVTALNATIGWNGE-ATCGVGIQTRRVFCVKSHVGQVMTKRCPDSTRPETVRPCFLPCKKDCIVTAFSEWTPCPRMC 753 HSP 3 Score: 83.5741 bits (205), Expect = 5.391e-16 Identity = 118/469 (25.16%), Postives = 182/469 (38.81%), Query Frame = -1
Query: 274 DCLHGNWSPWSPCLKDGSHVMVRKQ---RRSRHLLAYPLGKGKPCNTTTEERSCNVNTRLVTEHFVWFSGNWSSCYTDKSSNFVEEKCQIYKKNRPVFCTRLGDETLTPLSNLKCASVVMPKEEELCHVVCSQVSCFYSDWSEWKNCSH--------GYIKRNRTLLHGSSHA------CILTEQKRSCNSERAL---WERVTDGVCK-------------LYGGDICGEGVIDSKVNC-KMEGKTVDESNCDRMTKPLTSSTCSVPCKPGHTLKCVLSTWSKWS----ICQNG----VKNRTRILLH----GNQNCLKVSRTENKKC----YTKEYFYIPPSWGVCEIMNQSI---------GCGKGEQTRNFQCVENLIGNVVNESYCLERLNYTQPIETRSCYVC--NDCIMTPWSQWEPDCSAICAPSRAQGSTSTQRRRYILSQHSAKCNES----LIETKTCP 1485
DC+ +WS W C+ + H K+ R RH+L G C E C + W + C+ D KC + + C E + S C V P E + C + C ++ C S+W+EW +CS G R+RT+L + ++ R CN + WE G C G CG G+ +V C K V C T+P T C +PCK C+++ +S+W+ +CQ G ++R RI++ G Q C + E ++C Y + P W C ++ +S+ CGKG QTR C+ + CL++ N P+ + C V DC T WS++ P CS C + + S +R+ S+ KC +S L+ET+ CP
Sbjct: 484 DCIVSSWSAWGLCIHENCHDPQGKKGFRTRQRHVLMESTGPAGHCPHLVESVPCEDPM-----CYRWLASE-GICFPDHG------KCGLGHRILKAVCQNDRGEDV---SGSLCP-VPPPPERKSCEIPC-RMDCVLSEWTEWSSCSQSCSNKNSDGKQTRSRTILALAGEGGKPCPPSQALQEHRLCNDHSCMQLHWETSPWGPCSEDTLVTALNATIGWNGEATCGVGIQTRRVFCVKSHVGQVMTKRCPDSTRPETVRPCFLPCKK----DCIVTAFSEWTPCPRMCQAGNATVKQSRYRIIIQEAANGGQECPD-TLYEERECEDVSLCPVYRWKPQKWSPCILVPESVWQGITGSSEACGKGLQTRAVSCISD-DNRSAEMMECLKQTN-GMPLLVQECTVPCREDCTFTAWSKFTP-CSTNC-----EATKSRRRQLTGKSRKKEKCQDSDLYPLVETELCP 922 The following BLAST results are available for this feature:
BLAST of TCONS_00064201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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