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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064198 ID=TCONS_00064198|Name=TCONS_00064198|organism=Clytia hemisphaerica|type=transcript|length=3367bpRun BLAST on NCBI transcript from alignment at scaffold_41:161151..171770- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064198 ID=TCONS_00064198|Name=TCONS_00064198|organism=Clytia hemisphaerica|type=transcript|length=10620bp|location=Sequence derived from alignment at scaffold_41:161151..171770- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064198 vs. Swiss-Prot (Human)
Match: TRRAP (Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3) HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0 Identity = 333/552 (60.33%), Postives = 407/552 (73.73%), Query Frame = 3
Query: 1566 NRDAKESFTVADYREMVKTLVCGVKTITWGAGSCKLPGDIQ-IPVYPQGNKVFLPSETETFIRLLKYALVALDVYQISMNPSGVGYVRMTNSPHQIRMKEEKEILEHFAGVFTMLNTATFKEVFSATIEYLVERIHNNYAFQIIPNAFLANPNTSATFATILVNFLLGRLKDMGTKSERANLYLKLFKLVFGSVSLFAQENEQMLKPHLHDIVNNSMELALTAKEPYNYFLLLRALFRSIGGGNHDXXXXXXXXXXXXXXXXXXXXQSGIHKQYMKDLFVELCLTVPVRXXXXXXXXXXXXXXXVSALNGSQSLVSQGLRTLELCVDNLQPDFLYDHIQPVKSDLMQALWKTLRNPMETMAHVAFRVLGKFGGGGRKMLQEPQQLTYRATENIGACLMLHFMDCNKPVNLPISVIIEKAVSVLKTQVPTLPLSSQQNNYSVENMPFYREQAWTIAKHFLVGALSLEDNEVFFKKLVRDQSYKENEVTKNGKACVPPCVDEQSKKNFQQGLTSMLFAATIKELQNDSIPFMLGVLRQIALLIVTQQAGKFSKP 3218
+++ K++F V D R +VKTLVCGVKTITWG SCK PG+ Q IP NK P ET+ +I+L+KYA+ ALD+YQ+ + +G Y+R+ N +RMKEEKE+LEHFAGVFTM+N TFKE+F T+ Y+VERI NYA QI+ N+FLANP TSA FATILV +LL RL +MG+ E +NLYLKLFKLVFGSVSLFA ENEQMLKPHLH IVN+SMELA TAKEPYNYFLLLRALFRSIGGG+HDLLYQEFLPLLP LLQGLN LQSG+HKQ+MKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSQ+LVSQGLRTLELCVDNLQPDFLYDHIQPV+++LMQALW+TLRNP ++++HVA+RVLGKFGG RKML+E Q+L Y TE G + + F DC + LP+ IE A+ LK S P+YR QAW + K FLV +SLEDN+ +L+ ++ E + + D ++K F+Q LT +A IK+L+ ++PF+ ++R ++ V QQ G F P
Sbjct: 534 DKEDKQTFQVTDCRSLVKTLVCGVKTITWGITSCKAPGEAQFIP-----NKQLQPKETQIYIKLVKYAMQALDIYQVQIAGNGQTYIRVANC-QTVRMKEEKEVLEHFAGVFTMMNPLTFKEIFQTTVPYMVERISKNYALQIVANSFLANPTTSALFATILVEYLLDRLPEMGSNVELSNLYLKLFKLVFGSVSLFAAENEQMLKPHLHKIVNSSMELAQTAKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLPNLLQGLNMLQSGLHKQHMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSQTLVSQGLRTLELCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGGSNRKMLKESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEKAIETALDCLK---------------SANTEPYYRRQAWEVIKCFLVAMMSLEDNKHALYQLLAHPNFTEKTIPNVIISHRYKAQDTPARKTFEQALTGAFMSAVIKDLRPSALPFVASLIRHYTMVAVAQQCGPFLLP 1064 HSP 2 Score: 337.035 bits (863), Expect = 7.125e-95 Identity = 162/254 (63.78%), Postives = 204/254 (80.31%), Query Frame = 3
Query: 654 LKVLAELPIIVVLMYQLYKQNVQGKIGEFIPVVMNTITLQPSLGCRKLTTFNKEIYVDFTAAQIKTLSFLAYIVRIFQDLVSQYSNNMVAGMLALFRYCPQEVAHLRKELLIAARHILATDLRSKFVPYIEQLFDEDVLIGNGWTVNEALRPLAYSTLADFVHHVRSLLTLPNLSIAVQLFSKNVYDESLPISIQRMSCKLLLNLVECIRQRSDEAA--GREILMKMLEVFVRKFQTIAKHHIPMIMEKCELSS 1409
LKVLAELPIIVVLMYQLYK N+ + EF+P++MNTI +Q S R+ +NKE+Y DF AAQIKTLSFLAYI+RI+Q+LV++YS MV GML L CP E AHLRKELLIAA+HIL T+LR++F+P +++LFDE +LIG+G+T E LRPLAYSTLAD VHHVR L L +LS+AVQLF+KN+ DESLP SIQ MSCKLLLNLV+CIR +S++ + GR++LM+MLEVFV KF TIA++ + I +KC+ S
Sbjct: 222 LKVLAELPIIVVLMYQLYKLNIHNVVAEFVPLIMNTIAIQVSAQARQHKLYNKELYADFIAAQIKTLSFLAYIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLIAAKHILTTELRNQFIPCMDKLFDESILIGSGYTARETLRPLAYSTLADLVHHVRQHLPLSDLSLAVQLFAKNIDDESLPSSIQTMSCKLLLNLVDCIRSKSEQESGNGRDVLMRMLEVFVLKFHTIARYQLSAIFKKCKPQS 475 HSP 3 Score: 164.466 bits (415), Expect = 1.138e-40 Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = 1
Query: 64 LISEYQKYANALTDSSVADDDKLKYAQEISQNFEAISSSTHYSTFLEFAIPKFLSVLKDGEPQFTTDSVKQELRKLLLETIHRIPANDSLKTHVSSILDVMFNILTIDNEENVLVCLRIIIELHKQYRPPIKPE*H 471
L+ +Y ++ ALTD + D+ KLK QE+S+NFE ++SS YSTFLE IP+FL+ L+DGE QF + Q+LRKL+LE IHRIP N+ L+ H ++L VMF L +NEENVL+CLRIIIELHKQ+RPPI E H
Sbjct: 17 LMKKYLQFVAALTDVNTPDETKLKMMQEVSENFENVTSSPQYSTFLEHIIPRFLTFLQDGEVQFLQEKPAQQLRKLVLEIIHRIPTNEHLRPHTKNVLSVMFRFLETENEENVLICLRIIIELHKQFRPPITQEIH 152 The following BLAST results are available for this feature:
BLAST of TCONS_00064198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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