TCONS_00064176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064176
Unique NameTCONS_00064176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064176 ID=TCONS_00064176|Name=TCONS_00064176|organism=Clytia hemisphaerica|type=transcript|length=826bp
TTCTTCCAAATGCATGGTAAGAGAAGACCAGTTCTTTCTTTGTATGCTTT
GAACTCCTCGTGTCTTGACATTGATTTGTCCTTACGCATCATGTTTGGGT
AAAATAAAGCAACAAAAACAATAGCCAATAAGAAGAAAGGAACGATACTA
CCTGAGATACCAGCAAATCCTAAATAAGTCAAAACCTCACCCAAATAATT
AGGATTTCTTGTCAAAGTAAAGAAGCCATCTGTGATTAAACctttcttta
attttaaagTGAAATGTTTTTGACAGTCAGCACCATAGTGGAAAAACATA
CCAAAAGTGAATGATGAAACTGATAATAAAACAGCCAAGTTGCTCGGCAC
ATGGTTTGCACGACAGATCATGAAAGGTGCTGCCCAATAAGCTATCATTC
CAAAGAAGCCTAAAACGCACCATACCAATGATATAGGTCGCATCCAGCTC
GGATCGGGATACCAGACTTCTTTCATCAGCCAGCACATTGAGTACGCACC
ATGCATAGCCAAGTAAAGATACGCAGCAAAGGTTTGAGTTTTAAACCACC
AGATAAGCATAAGAACCACGAAGGGTGTCATAACTTTGTGCAAATTGATA
AAATGTCGccatttgaattccattgtttttacaTTTAGAGATCTAAGTTG
TTATTATCCTTAAATTAAACTATGTTCATGATTAAACTAGAAGCGTTGTT
ATCATTTTAATACAAATATCAAGGCCACACCATAGTATATTTAATAATTT
CCCATCACAATGTAGATTTTCGATTTGATGTAACTGAAAATGGATGAAAG
TCTTATCTAAAATTCCTAAAACTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_41:569391..570276+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064176 ID=TCONS_00064176|Name=TCONS_00064176|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_41:569391..570276+ (Clytia hemisphaerica)
TTCTTCCAAATGCATGGTAAGAGAAGACCAGTTCTTTCTTTGTATGCTTT
GAACTCCTCGTGTCTTGACATTGATTTGTCCTTACGCATCATGTTTGGGT
AAAATAAAGCAACAAAAACAATAGCCAATAAGAAGAAAGGAACGATACTA
CCTGAGATACCAGCAAATCCTAAATAAGTCAAAACCTCACCCAAATAATT
AGGATTTCTTGTCAAAGTAAAGAAGCCATCTGTGATTAAACctttcttta
attttaaagTGAAATGTTTTTGACAGTCAGCACCATAGTGGAAAAACATA
CCAAAAGTGAATGATGAAACTGATAATAAAACAGCCAAGTTGCTCGGCAC
ATGGTTTGCACGACAGATCATGAAAGGTGCTGCCCAATAAGCTATCATTC
CAAAGAAGCCTAAAACGCACCATACCAATGATATAGGTCGCATCCAGCTC
GGATCGGGATACCAGACTTCTTTCATCAGCCAGCACATAGAGTACGTNCG
CATCCAGCTCGGATCGGGATACCAGATTTCTTTCATCAGCCAGCACATTG
AGTACGCACCATGCATAGCCAAGTAAAGATACGCAGCAAAGGTTTGAGTT
TTAAACCACCAGATAAGCATAAGAACCACGAAGGGTGTCATAACTTTGTG
CAAATTGATAAAATGTCGccatttgaattccattgtttttacaTTTAGAG
ATCTAAGTTGTTATTATCCTTAAATTAAACTATGTTCATGATTAAACTAG
AAGCGTTGTTATCATTTTAATACAAATATCAAGGCCACACCATAGTATAT
TTAATAATTTCCCATCACAATGTAGATTTTCGATTTGATGTAACTGAAAA
TGGATGAAAGTCTTATCTAAAATTCCTAAAACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040240XLOC_040240Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064176-exon-scaffold_41-1491911889:569391..569876TCONS_00064176-exon-scaffold_41-1491911889:569391..569876Clytia hemisphaericaexon
TCONS_00064176-exon-scaffold_41-1510915933:569391..569876TCONS_00064176-exon-scaffold_41-1510915933:569391..569876Clytia hemisphaericaexon
TCONS_00064176-exon-scaffold_41-1575043694:569391..569876TCONS_00064176-exon-scaffold_41-1575043694:569391..569876Clytia hemisphaericaexon
TCONS_00064176-exon-scaffold_41-1491911889:569937..570276TCONS_00064176-exon-scaffold_41-1491911889:569937..570276Clytia hemisphaericaexon
TCONS_00064176-exon-scaffold_41-1510915933:569937..570276TCONS_00064176-exon-scaffold_41-1510915933:569937..570276Clytia hemisphaericaexon
TCONS_00064176-exon-scaffold_41-1575043694:569937..570276TCONS_00064176-exon-scaffold_41-1575043694:569937..570276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:569391..570276 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.195315	0.063695	0.775425	1.10295	31.5663	35.6424	31.3985	20.8265	21.1468	22.9004	2.21802	2.02543	1.43663	1.47164	1.29496	1.72548	0.73349	1.21528	2.66854	1.62703	1.05486	1.13884	0.246943	1.43254	0.0788445	0.0841449	0.382926	0.780281
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010721DUF1295
IPR0011043-oxo-5_a-steroid_4-DH_C
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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