TCONS_00064171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064171
Unique NameTCONS_00064171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064171 ID=TCONS_00064171|Name=TCONS_00064171|organism=Clytia hemisphaerica|type=transcript|length=780bp
TTTCattttaattagatatttttcaaaaaaaaattggaactgAATCACAA
GGACTAAGGGGACCTAATAATAATCTTCCATCTATAAAAAAATAGTTACA
AAATGTTCAAgtattcaataaaattttctcATATGTGTATTCCTACAGTA
TTGGGTGAGTTTATCAAGGAGgggtaaaatttttgaacagcGTTTCCTTA
ACATCAAGGTTAAGGAAATGCAGAAAACTTCATTCTATGGCTTAAAACGC
ATTGAAATTagctgaaaagtgaaaaaattatgaattttccAACAAGTTAC
ATTCAAAATCAAATTCCTCTTGAAAGGGCTCAACCTAACAATGTAGGATT
AACGTTGTTTTAAAAATAACATTCATTACTGCTGCACTGAAAGTGTCTGT
TTCTCCTTCATGAATGTTCTTTTGGACGAATGCATGCGATATGATTCTCA
TAAATGTCTTCATTTGTTATAATATCTACATCTCTCTTATCATGTTAACC
CTGGGAAGGCTGGCTAGGTGCAATGTTTAAAACATGCCTCCGCCCATACC
ACCCATTCCTCCCATACCACCCATGCCTCCACCCATAGGTGGCATTGGTG
GTTCTTCCTTTGGAATTTCAGTAATGACAGCCTCAGCAGTTGTAAGAAGA
GAAGCGACTCCAGCAGCGTCGTTCAAAGCAATACGGACAACTTTTGAAGG
ATCGATAACTCCAGCATCGACAAGATTCACGAATTCTCCGTTGGCTGCGT
TGTAACCAAACTCTGGATCTTCGGATGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_41:445345..446320+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064171 ID=TCONS_00064171|Name=TCONS_00064171|organism=Clytia hemisphaerica|type=transcript|length=976bp|location=Sequence derived from alignment at scaffold_41:445345..446320+ (Clytia hemisphaerica)
TTTCattttaattagatatttttcaaaaaaaaattggaactgAATCACAA
GGACTAAGGGGACCTAATAATAATCTTCCATCTATAAAAAAATAGTTACA
AAATGTTCAAgtattcaataaaattttctcATATGTGTATTCCTACAGTA
TTGGGTGAGTTTATCAAGGAGgggtaaaatttttgaacagcGTTTCCTTA
ACATCAAGGTTAAGGAAATGCAGAAAACTTCATTCTATGGCTTAAAACGC
ATTGAAATTagctgaaaagtgaaaaaattatgaattttccAACAAGTTAC
ATTCAAAATCAAATTCCTCNtgggaaaaaaaaaaaaaaaaaaaaaaaaaa
aaattaacatcaaGGTTAAGGAAATGTCCTTAACAAAATGTCCTTAACAT
CAAGGTTAAGGAAATGCAGAAAACTTCATTCTATGGCTTAAAACGCATTG
AAATTagctgaaaagtgaaaaaaatatgaattttccAACAAGTTACATTC
AAAATCAAATTCCTCTTGAAAGGGCTCAACCTAACAATGTAGGATTAACG
TTGTTTTAAAAATAACATTCATTACTGCTGCACTGAAAGTGTCTGTTTCT
CCTTCATGAATGTTCTTTTGGACGAATGCATGCGATATGATTCTCATAAA
TGTCTTCATTTGTTATAATATCTACATCTCTCTTATCATGTTAACCCTGG
GAAGGCTGGCTAGGTGCAATGTTTAAAACATGCCTCCGCCCATACCACCC
ATTCCTCCCATACCACCCATGCCTCCACCCATAGGTGGCATTGGTGGTTC
TTCCTTTGGAATTTCAGTAATGACAGCCTCAGCAGTTGTAAGAAGAGAAG
CGACTCCAGCAGCGTCGTTCAAAGCAATACGGACAACTTTTGAAGGATCG
ATAACTCCAGCATCGACAAGATTCACGAATTCTCCGTTGGCTGCGTTGTA
ACCAAACTCTGGATCTTCGGATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040237XLOC_040237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064171-exon-scaffold_41-1491911889:445345..445644TCONS_00064171-exon-scaffold_41-1491911889:445345..445644Clytia hemisphaericaexon
TCONS_00064171-exon-scaffold_41-1510915933:445345..445644TCONS_00064171-exon-scaffold_41-1510915933:445345..445644Clytia hemisphaericaexon
TCONS_00064171-exon-scaffold_41-1575043694:445345..445644TCONS_00064171-exon-scaffold_41-1575043694:445345..445644Clytia hemisphaericaexon
TCONS_00064171-exon-scaffold_41-1491911889:445841..446320TCONS_00064171-exon-scaffold_41-1491911889:445841..446320Clytia hemisphaericaexon
TCONS_00064171-exon-scaffold_41-1510915933:445841..446320TCONS_00064171-exon-scaffold_41-1510915933:445841..446320Clytia hemisphaericaexon
TCONS_00064171-exon-scaffold_41-1575043694:445841..446320TCONS_00064171-exon-scaffold_41-1575043694:445841..446320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:445345..446320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000668641	0	0	0	0	1.66027	0	3.34687	0	0	0.00585132	0	0	3.17979	6.50898e-06	0	0	0	0	0	5.24146	3.51647	24.9716	6.26272	0	0	7.32958	16.6652	10.7432	1.70812
Blast
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BLAST of TCONS_00064171 vs. Swiss-Prot (Human)
Match: CH60 (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.690e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = -3 
Query:  602 EFGYNAANGEFVNLVDAGVIDPSKVVRIALNDAAGVASLLTTAEAVITEIPKEE 763
            E GY+A  G+FVN+V+ G+IDP+KVVR AL DAAGVASLLTTAE V+TEIPKEE
Sbjct:  500 EVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEE 553
The following BLAST results are available for this feature:
BLAST of TCONS_00064171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CH605.690e-1874.0760 kDa heat shock protein, mitochondrial OS=Homo s... [more]
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