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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064124 ID=TCONS_00064124|Name=TCONS_00064124|organism=Clytia hemisphaerica|type=transcript|length=1929bp
ggatgatgatgatgagtaaTTTAAGAGGCtggataaaatttgaaaacgga
aTGCAGCCCAGAGACGAGTAAGCAGAAGAGTAGGTGTTTACTGTGTTCCA
AACTCtacttagtctgaatcgcagaacTCTATAGACAAGTCTCTATGTTA
ACGAGCAACCAAACGACTTTTAAGTGtgcgtaaatataaaaatataaacc
taGAAAATTTGAACAggattacaaaaatattttctcctaACAACTAAAAG
CAGAGCCAACAAAATAGCTACACCGAAAAGAATCGGACAGAAATACTCCA
GACGATGAAATGTAAAGGCAGCGGTAAACAACCCAAGAGCGGCACCAAAG
CGGGAGAAAATCAAACGAACACCTTGCGCAAATGCCTGGACATTTGAAGG
TACCATCTTGGCAAGAGAGCCAATAAGGAATAGTTCTTCCCCCATATACA
TAACACTAGTACAGAGTGTTTCAACCAGCCATAATGTAGCATCAAGCCAA
ATGAAATTTCCCTGATCCAATTTAAAGAACATGAAAATCCCATACAATAT
TATCATGCACATCCATGATATCAAGCCCAGATAATATAATTTCTCGTCCT
TTGGTTCTTTATAGATTAATACAACTATAAAAATCAAAGAGACTGCTCCC
TCAGCTATTAACACGATATTTACCTCCAAGTTATCCCAATGCAAGAGTTT
GAGACATGCTAAAGGTATCCAGAGATCACAGGTAACGAGTGCAAAAGATA
CAACAAAAGACATTGCGAATGTTAAAGCCAAATCGAAATCGGTGAATAGT
TTACGCAATATAAACATGGTGTCGATAGCTGTGTTTTCGGTTCCGTGTGA
TTGGATATGGGCGGATTTATCAAGTTCGTGATGAGTTTCATCGGAGTCGT
CAGTAGGTTGTCCTATTGTCGCAAACCTGGCGTCGATGGCTCCAGTTTCA
TTGAGTGTATGTATCCTTTTATCAAGCACGGGGCAAGTTTCCCCAGATTC
GTTTATAGGCTTTCCTATAGTCGATTTCGATAACGATAACGTATTTGCTT
CAACTAACAAGGGCGTTGTCGCATCATGGCATTCTTCAATTGAATCATCG
TGTGTTTGCTTTCCTGATTTCATTTGAATCAGAGAACTTACTTCATAGCA
TTTCTTAGTTTCTTCATCATTAGCTTGATTCCCATTTGCCAAACGTTCAA
GCTCTTTGCCGTCCAAATTTTGAATAGcttctttcaaatcaaaatgtctC
GACAAATCAGTTACAAAGAAGAATATTAGGAAAAACGATATGATATACAT
GAAACAAACCAACAAGCTCGTTCCATTTGCGTATTTAATATGAACAGCAA
GGAACCAAAAATCCGCtctgatgaaaatgaaattgatacAGGGGCCTATC
ATACAGCCAAGCATAAAAGCACACGAAATAGCTGTTAATTGCGCTAGAAC
TTCTCCCGGTGGGTAGGATCGGGTTAATTCGGACAAGATAATCGGATTAT
AGGAATCGCCCATCCCCGCCAGTACTCGCCCGATAAGTAGAAAGTATGGC
GATTTTGGTATCGTGTATAAAACGTTTCCAATAATTGAAACCAAAGTAAT
GATACATAACATAAGACGCGCACGGCGAATTTTATCGAACATTTTACCGA
CAATCAGCGCTGAGAGGATGGCCGATAAAAGGTATAATCCAGAAATACGG
CTGTAAAACATATCCAAATCACTTCCACTAACTTTCAGGAAATCTCTCAA
GTATACGAATAAAGTAGCAAATGTTAATGTATACTCGATACCATCTACGA
AAGACATATAGTAAAAGATTCTCGTAGTTATTTTACgatttttaagccat
tttttgtaGCTGAATCCATCCCTCTTATTTCCAgtcatttttctttctct
attAAATTTAAAATGCACTTTAAAAGTAG Run BLAST on NCBI protein sequence of TCONS_00064124-protein >TCONS_00064124-protein ID=TCONS_00064124-protein|Name=TCONS_00064124-protein|organism=Clytia hemisphaerica|type=polypeptide|length=575bp
TFKVHFKFNRERKMTGNKRDGFSYKKWLKNRKITTRIFYYMSFVDGIEYT
LTFATLFVYLRDFLKVSGSDLDMFYSRISGLYLLSAILSALIVGKMFDKI
RRARLMLCIITLVSIIGNVLYTIPKSPYFLLIGRVLAGMGDSYNPIILSE
LTRSYPPGEVLAQLTAISCAFMLGCMIGPCINFIFIRADFWFLAVHIKYA
NGTSLLVCFMYIISFFLIFFFVTDLSRHFDLKEAIQNLDGKELERLANGN
QANDEETKKCYEVSSLIQMKSGKQTHDDSIEECHDATTPLLVEANTLSLS
KSTIGKPINESGETCPVLDKRIHTLNETGAIDARFATIGQPTDDSDETHH
ELDKSAHIQSHGTENTAIDTMFILRKLFTDFDLALTFAMSFVVSFALVTC
DLWIPLACLKLLHWDNLEVNIVLIAEGAVSLIFIVVLIYKEPKDEKLYYL
GLISWMCMIILYGIFMFFKLDQGNFIWLDATLWLVETLCTSVMYMGEELF
LIGSLAKMVPSNVQAFAQGVRLIFSRFGAALGLFTAAFTFHRLEYFCPIL
FGVAILLALLLVVRRKYFCNPVQIF Run BLAST on NCBI transcript from alignment at scaffold_408:119345..121273 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064124 ID=TCONS_00064124|Name=TCONS_00064124|organism=Clytia hemisphaerica|type=transcript|length=1929bp|location=Sequence derived from alignment at scaffold_408:119345..121273 (Clytia hemisphaerica)
CTACTTTTAAAGTGCATTTTAAATTTaatagagaaagaaaaatgacTGGA
AATAAGAGGGATGGATTCAGCtacaaaaaatggcttaaaaatcGTAAAAT
AACTACGAGAATCTTTTACTATATGTCTTTCGTAGATGGTATCGAGTATA
CATTAACATTTGCTACTTTATTCGTATACTTGAGAGATTTCCTGAAAGTT
AGTGGAAGTGATTTGGATATGTTTTACAGCCGTATTTCTGGATTATACCT
TTTATCGGCCATCCTCTCAGCGCTGATTGTCGGTAAAATGTTCGATAAAA
TTCGCCGTGCGCGTCTTATGTTATGTATCATTACTTTGGTTTCAATTATT
GGAAACGTTTTATACACGATACCAAAATCGCCATACTTTCTACTTATCGG
GCGAGTACTGGCGGGGATGGGCGATTCCTATAATCCGATTATCTTGTCCG
AATTAACCCGATCCTACCCACCGGGAGAAGTTCTAGCGCAATTAACAGCT
ATTTCGTGTGCTTTTATGCTTGGCTGTATGATAGGCCCCTgtatcaattt
cattttcatcagaGCGGATTTTTGGTTCCTTGCTGTTCATATTAAATACG
CAAATGGAACGAGCTTGTTGGTTTGTTTCATGTATATCATATCGTTTTTC
CTAATATTCTTCTTTGTAACTGATTTGTCGagacattttgatttgaaaga
agCTATTCAAAATTTGGACGGCAAAGAGCTTGAACGTTTGGCAAATGGGA
ATCAAGCTAATGATGAAGAAACTAAGAAATGCTATGAAGTAAGTTCTCTG
ATTCAAATGAAATCAGGAAAGCAAACACACGATGATTCAATTGAAGAATG
CCATGATGCGACAACGCCCTTGTTAGTTGAAGCAAATACGTTATCGTTAT
CGAAATCGACTATAGGAAAGCCTATAAACGAATCTGGGGAAACTTGCCCC
GTGCTTGATAAAAGGATACATACACTCAATGAAACTGGAGCCATCGACGC
CAGGTTTGCGACAATAGGACAACCTACTGACGACTCCGATGAAACTCATC
ACGAACTTGATAAATCCGCCCATATCCAATCACACGGAACCGAAAACACA
GCTATCGACACCATGTTTATATTGCGTAAACTATTCACCGATTTCGATTT
GGCTTTAACATTCGCAATGTCTTTTGTTGTATCTTTTGCACTCGTTACCT
GTGATCTCTGGATACCTTTAGCATGTCTCAAACTCTTGCATTGGGATAAC
TTGGAGGTAAATATCGTGTTAATAGCTGAGGGAGCAGTCTCTTTGATTTT
TATAGTTGTATTAATCTATAAAGAACCAAAGGACGAGAAATTATATTATC
TGGGCTTGATATCATGGATGTGCATGATAATATTGTATGGGATTTTCATG
TTCTTTAAATTGGATCAGGGAAATTTCATTTGGCTTGATGCTACATTATG
GCTGGTTGAAACACTCTGTACTAGTGTTATGTATATGGGGGAAGAACTAT
TCCTTATTGGCTCTCTTGCCAAGATGGTACCTTCAAATGTCCAGGCATTT
GCGCAAGGTGTTCGTTTGATTTTCTCCCGCTTTGGTGCCGCTCTTGGGTT
GTTTACCGCTGCCTTTACATTTCATCGTCTGGAGTATTTCTGTCCGATTC
TTTTCGGTGTAGCTATTTTGTTGGCTCTGCTTTTAGTTGTtaggagaaaa
tatttttgtaatccTGTTCAAATTTTCtaggtttatatttttatatttac
gcaCACTTAAAAGTCGTTTGGTTGCTCGTTAACATAGAGACTTGTCTATA
GAgttctgcgattcagactaagtaGAGTTTGGAACACAGTAAACACCTAC
TCTTCTGCTTACTCGTCTCTGGGCTGCAttccgttttcaaattttatcca
GCCTCTTAAAttactcatcatcatcatcc Coding sequence (CDS) from alignment at scaffold_408:119345..121273 >TCONS_00064124 ID=TCONS_00064124|Name=TCONS_00064124|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at scaffold_408:119345..121273 (Clytia hemisphaerica)
ACTTTTAAAGTGCATTTTAAATTTaatagagaaagaaaaatgacTGGAAA
TAAGAGGGATGGATTCAGCtacaaaaaatggcttaaaaatcGTAAAATAA
CTACGAGAATCTTTTACTATATGTCTTTCGTAGATGGTATCGAGTATACA
TTAACATTTGCTACTTTATTCGTATACTTGAGAGATTTCCTGAAAGTTAG
TGGAAGTGATTTGGATATGTTTTACAGCCGTATTTCTGGATTATACCTTT
TATCGGCCATCCTCTCAGCGCTGATTGTCGGTAAAATGTTCGATAAAATT
CGCCGTGCGCGTCTTATGTTATGTATCATTACTTTGGTTTCAATTATTGG
AAACGTTTTATACACGATACCAAAATCGCCATACTTTCTACTTATCGGGC
GAGTACTGGCGGGGATGGGCGATTCCTATAATCCGATTATCTTGTCCGAA
TTAACCCGATCCTACCCACCGGGAGAAGTTCTAGCGCAATTAACAGCTAT
TTCGTGTGCTTTTATGCTTGGCTGTATGATAGGCCCCTgtatcaatttca
ttttcatcagaGCGGATTTTTGGTTCCTTGCTGTTCATATTAAATACGCA
AATGGAACGAGCTTGTTGGTTTGTTTCATGTATATCATATCGTTTTTCCT
AATATTCTTCTTTGTAACTGATTTGTCGagacattttgatttgaaagaag
CTATTCAAAATTTGGACGGCAAAGAGCTTGAACGTTTGGCAAATGGGAAT
CAAGCTAATGATGAAGAAACTAAGAAATGCTATGAAGTAAGTTCTCTGAT
TCAAATGAAATCAGGAAAGCAAACACACGATGATTCAATTGAAGAATGCC
ATGATGCGACAACGCCCTTGTTAGTTGAAGCAAATACGTTATCGTTATCG
AAATCGACTATAGGAAAGCCTATAAACGAATCTGGGGAAACTTGCCCCGT
GCTTGATAAAAGGATACATACACTCAATGAAACTGGAGCCATCGACGCCA
GGTTTGCGACAATAGGACAACCTACTGACGACTCCGATGAAACTCATCAC
GAACTTGATAAATCCGCCCATATCCAATCACACGGAACCGAAAACACAGC
TATCGACACCATGTTTATATTGCGTAAACTATTCACCGATTTCGATTTGG
CTTTAACATTCGCAATGTCTTTTGTTGTATCTTTTGCACTCGTTACCTGT
GATCTCTGGATACCTTTAGCATGTCTCAAACTCTTGCATTGGGATAACTT
GGAGGTAAATATCGTGTTAATAGCTGAGGGAGCAGTCTCTTTGATTTTTA
TAGTTGTATTAATCTATAAAGAACCAAAGGACGAGAAATTATATTATCTG
GGCTTGATATCATGGATGTGCATGATAATATTGTATGGGATTTTCATGTT
CTTTAAATTGGATCAGGGAAATTTCATTTGGCTTGATGCTACATTATGGC
TGGTTGAAACACTCTGTACTAGTGTTATGTATATGGGGGAAGAACTATTC
CTTATTGGCTCTCTTGCCAAGATGGTACCTTCAAATGTCCAGGCATTTGC
GCAAGGTGTTCGTTTGATTTTCTCCCGCTTTGGTGCCGCTCTTGGGTTGT
TTACCGCTGCCTTTACATTTCATCGTCTGGAGTATTTCTGTCCGATTCTT
TTCGGTGTAGCTATTTTGTTGGCTCTGCTTTTAGTTGTtaggagaaaata
tttttgtaatccTGTTCAAATTTTCtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064124-exon-scaffold_408-1491911889:119345..121273 | TCONS_00064124-exon-scaffold_408-1491911889:119345..121273 | Clytia hemisphaerica | exon |
| TCONS_00064124-exon-scaffold_408-1510915933:119345..121273 | TCONS_00064124-exon-scaffold_408-1510915933:119345..121273 | Clytia hemisphaerica | exon |
| TCONS_00064124-exon-scaffold_408-1575043694:119345..121273 | TCONS_00064124-exon-scaffold_408-1575043694:119345..121273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_408 | supercontig | scaffold_408:119345..121273 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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