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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064123 ID=TCONS_00064123|Name=TCONS_00064123|organism=Clytia hemisphaerica|type=transcript|length=886bp
ACTAGCAGCCATAAAGCGATATGATTTGTCCTGCTTTTTCCTTCTATATG
CTGCCATCAACAATACAAATAATTGCAACCATTTTCTATACACTTTCATG
TATTATTGCAGCTTTTGGGAATACGTTTTGTCTCATTGTTCTTTGGCAAC
CTTCACAACGATCAAAATCGAATAAAATTTTAACGTCTCTCGCTTTGAGT
GATTGTTTGGTTGGTTATGTAAGCCTCCCATGGACTATATGGTTAATAAA
CTTTCCTCAAGACGGAGATATGACAACCTGCCATATCATCAAAGGTTATT
TCTTAACGGGACTGTGGTTTATTACCTGTTCAACATGTTCAATAATGTTC
ATTGCATATGAACGATATGTCTCCATCACAAAACACGCTCAATATCATGA
TATTTTGACCGATCAGAAAATCAACATCATCATCGGCCTGATTTGGTCCA
TAACTCTCATATTTGGAATAAGCAGCAATTTCTATCCCGTAGTTTACATA
TTTGGTGGCCAGTTGCTTATAATCGTATCCGTGATAATCTTATGTTGTAG
CTATTATTTCGTTTGGAAAGCATTTCGACAGAGTGGGAAACTCCTTTCGA
ACAGGCCCAATCAAGTTGCAGAGAGGAAAAGGCATGAGCAGGAACAAAAA
CTGGTCAATAAAGTGTTGATCTTGATTGCCTTCTACTTGGCAGCTTTTGT
CCCTTCATTATTCTTCCAAGGGCTATTGCTTGTTCAAGGATCAATGCCTA
GCGCTGTATCGGTAGAGGTTTTACAGTATACAAATTTGTTCGTTGCGTAT
GCTGCTTTGTCCAATTCTTGCTTCAACCCTTTCATTTATGTGTGGAAAGA
TGCAGGGTTCAGACTTGCTTGTAAACGCTTGCTTCN Run BLAST on NCBI protein sequence of TCONS_00064123-protein >TCONS_00064123-protein ID=TCONS_00064123-protein|Name=TCONS_00064123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MICPAFSFYMLPSTIQIIATIFYTLSCIIAAFGNTFCLIVLWQPSQRSKS
NKILTSLALSDCLVGYVSLPWTIWLINFPQDGDMTTCHIIKGYFLTGLWF
ITCSTCSIMFIAYERYVSITKHAQYHDILTDQKINIIIGLIWSITLIFGI
SSNFYPVVYIFGGQLLIIVSVIILCCSYYFVWKAFRQSGKLLSNRPNQVA
ERKRHEQEQKLVNKVLILIAFYLAAFVPSLFFQGLLLVQGSMPSAVSVEV
LQYTNLFVAYAALSNSCFNPFIYVWKDAGFRLACKRLL Run BLAST on NCBI transcript from alignment at scaffold_408:110508..111393 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064123 ID=TCONS_00064123|Name=TCONS_00064123|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_408:110508..111393 (Clytia hemisphaerica)
NGAAGCAAGCGTTTACAAGCAAGTCTGAACCCTGCATCTTTCCACACATA
AATGAAAGGGTTGAAGCAAGAATTGGACAAAGCAGCATACGCAACGAACA
AATTTGTATACTGTAAAACCTCTACCGATACAGCGCTAGGCATTGATCCT
TGAACAAGCAATAGCCCTTGGAAGAATAATGAAGGGACAAAAGCTGCCAA
GTAGAAGGCAATCAAGATCAACACTTTATTGACCAGTTTTTGTTCCTGCT
CATGCCTTTTCCTCTCTGCAACTTGATTGGGCCTGTTCGAAAGGAGTTTC
CCACTCTGTCGAAATGCTTTCCAAACGAAATAATAGCTACAACATAAGAT
TATCACGGATACGATTATAAGCAACTGGCCACCAAATATGTAAACTACGG
GATAGAAATTGCTGCTTATTCCAAATATGAGAGTTATGGACCAAATCAGG
CCGATGATGATGTTGATTTTCTGATCGGTCAAAATATCATGATATTGAGC
GTGTTTTGTGATGGAGACATATCGTTCATATGCAATGAACATTATTGAAC
ATGTTGAACAGGTAATAAACCACAGTCCCGTTAAGAAATAACCTTTGATG
ATATGGCAGGTTGTCATATCTCCGTCTTGAGGAAAGTTTATTAACCATAT
AGTCCATGGGAGGCTTACATAACCAACCAAACAATCACTCAAAGCGAGAG
ACGTTAAAATTTTATTCGATTTTGATCGTTGTGAAGGTTGCCAAAGAACA
ATGAGACAAAACGTATTCCCAAAAGCTGCAATAATACATGAAAGTGTATA
GAAAATGGTTGCAATTATTTGTATTGTTGATGGCAGCATATAGAAGGAAA
AAGCAGGACAAATCATATCGCTTTATGGCTGCTAGT Coding sequence (CDS) from alignment at scaffold_408:110508..111393 >TCONS_00064123 ID=TCONS_00064123|Name=TCONS_00064123|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_408:110508..111393 (Clytia hemisphaerica)
AAGCAAGCGTTTACAAGCAAGTCTGAACCCTGCATCTTTCCACACATAAA
TGAAAGGGTTGAAGCAAGAATTGGACAAAGCAGCATACGCAACGAACAAA
TTTGTATACTGTAAAACCTCTACCGATACAGCGCTAGGCATTGATCCTTG
AACAAGCAATAGCCCTTGGAAGAATAATGAAGGGACAAAAGCTGCCAAGT
AGAAGGCAATCAAGATCAACACTTTATTGACCAGTTTTTGTTCCTGCTCA
TGCCTTTTCCTCTCTGCAACTTGATTGGGCCTGTTCGAAAGGAGTTTCCC
ACTCTGTCGAAATGCTTTCCAAACGAAATAATAGCTACAACATAAGATTA
TCACGGATACGATTATAAGCAACTGGCCACCAAATATGTAAACTACGGGA
TAGAAATTGCTGCTTATTCCAAATATGAGAGTTATGGACCAAATCAGGCC
GATGATGATGTTGATTTTCTGATCGGTCAAAATATCATGATATTGAGCGT
GTTTTGTGATGGAGACATATCGTTCATATGCAATGAACATTATTGAACAT
GTTGAACAGGTAATAAACCACAGTCCCGTTAAGAAATAACCTTTGATGAT
ATGGCAGGTTGTCATATCTCCGTCTTGAGGAAAGTTTATTAACCATATAG
TCCATGGGAGGCTTACATAACCAACCAAACAATCACTCAAAGCGAGAGAC
GTTAAAATTTTATTCGATTTTGATCGTTGTGAAGGTTGCCAAAGAACAAT
GAGACAAAACGTATTCCCAAAAGCTGCAATAATACATGAAAGTGTATAGA
AAATGGTTGCAATTATTTGTATTGTTGATGGCAGCATATAGAAGGAAAAA
GCAGGACAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064123-exon-scaffold_408-1491911889:110508..111393 | TCONS_00064123-exon-scaffold_408-1491911889:110508..111393 | Clytia hemisphaerica | exon |
| TCONS_00064123-exon-scaffold_408-1510915933:110508..111393 | TCONS_00064123-exon-scaffold_408-1510915933:110508..111393 | Clytia hemisphaerica | exon |
| TCONS_00064123-exon-scaffold_408-1575043694:110508..111393 | TCONS_00064123-exon-scaffold_408-1575043694:110508..111393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_408 | supercontig | scaffold_408:110508..111393 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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