TCONS_00064112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064112
Unique NameTCONS_00064112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064112 ID=TCONS_00064112|Name=TCONS_00064112|organism=Clytia hemisphaerica|type=transcript|length=2385bp
aaaaaaacgaaatttgtCAACAAGGCTGAATGAACAAGGTCAAGCAATCT
TAACTGTCAATGTATCCAAACAAACATACAATACCAATGGATGACATGAA
AACTAAATTGATGCTGAAGAAGATTAAAACAGCAAATTTGTCAACAAGGT
CAAAGCATCTATATGGACACACATACAATTCTCTGCTCAAAATAATCCAa
ggatttaaaaaaacaaaatactacatatacaaaacaaaaaataagatGCT
AATGCAACAAAAGAATATTAATATGTCAATGGTCATTCTAGTGtcattct
ttcttttcttttttctcaactGGTGTTAAATTCTCTTTGTCGAAATCTCC
AGTATTACCTGTGTCATCATCATCTCCAGTATTACCTGTGTCATCATCAT
CTCCAGTACTACCAGTGTTTTCTTCTTGTTCGTCCATGACCACAGTAGTA
GCTTTAACAAGGTCAAGTTTTGTAACAACACCACTTATTGACAAGTAATC
AATATCAAATTTGTTTGTCATCAAATATAATTGGATTTGATCATTACCCA
TTCCAATTGGCAACATGTTTTCCTTTACATCAAGTTTAATTGTAGATGTA
TTTGTATTTACAAAGATTGACCAAAACTTGACTTCGCTTGCTGCAATCAT
GACAGTTGCATCACAGGATGGGCAATCGATTGTTTTTTTAGAGGACTTGG
TGCAAGAAAAGACGTGGTTGCAGAATAAGCACTTTGTTGTATGTGTTAAT
TTAGCACCGACAATAGTGCAGTCATAATGGTGTGATACAGTTGAATGTTC
CTCAGGACTCTTGTAATCCTCCAGATCTTGAATCTTTTTGAATGCTGTAC
TACTTGTGGATGCTAGTTCAGGTTCATTATTCCAAATGCCACGCCTCATG
TTCGTCAGTATGTAAGAGTCACCATCATTAACAAGGGATGCATACTCTCT
CCAGAAAACAATGTTGATGTGGTCAGTATCATCGCAGATAATTCCTTTTC
TCATAGGGACATTCGCTCCCTCGACATCCACATTGTCAATATCATGCAAT
TTTAAGACACCTGTGATGTTTATATGTTCATTCAATTGTGTTTCATTTAT
TGCAGTAAAGATTTTTGTGATTGGCAATTTGTAGTTGGGCTTGAAACCAA
GCAATTCTTGTTTGATGACCGAATTTTCCATAATTTTGACAGTTCCATTG
TCATATAATCCAGCTTTGGTTATGTGGACACCGATTTGCTGATTTTCTGA
ATCTTCTAACAAACGCCTCTTGTGAGGAGAAAAGCAAACAACACGTTTCA
CCTGGTTGTCTTCTGTCTCCACATTCAGATTGAAAAACGGCTTTGCTATT
TTGGTCTGCTTCATAGGTGAAAGGTTTGATACATATCCTTTGAGTTCAAT
TTCTAAAAAGAGAATGAAGACAAATCAAAAGACAACAACATAAGCATGAG
GGAAAGTACATTGATTCAAAAGTATAATTAATGTCAAAGCATATCAAAAT
AATATAGAGTCAAAAATATGTTTTAGTGTATTTTCGTTATTTTGCCAGGA
CAATATAAATTTAACTAAGTAATAGATACACTGATTTATTCAGATATAAA
ATGGTTTCTTTATGTTTTTATAGGAAAGGGGGTACCATAACAGAAGTATG
TGTATTGTGAGAGGGCTTAGGTGTAACAACCCATGACATGGATtacagaa
aacattcacaatctaaTCTCAGGTTAGTACGAGGGGCATGCTTCGAAAAA
TTCAACAGCTTTTAGACAGCTGAGGAATTGTTTCCACAAAGGGCCACAAT
GGATACCGAATACCAAATACAGACCGTTAAAAAAAATACCGACCGTTAAT
AAAAATACCGACCATTAAGAGAAATGCCGAATTTATTGATTTCAACCTTA
TGTCCGAATACCTTATACTgacctattttttcaaaagaaatactGAACAC
TGATAAAAAAATTGGCCTATTACTGAGTACCGATTGACCCATACGCCCCC
ACAGCCACAACCAACCCCATATTTATTTTGTTACAGACAGAATGCAGAAA
ATATTATGAATAAGCTTGTCTACTTCTCCAGATATTGAATGAAACACAAA
GCCGAAAGTGCTAAAAGTGGACAATTTTGCCTTGAGGGATTAGTACTAGC
AATTTTAAACACTGTTTAGGCTTGCATATCAAGCACATGGTGGTCTTACA
AACCACTAGAACTACACCAGAACGTACAATTTTGAGGATGAATGAAGCCA
ATATATCCAATTATGTGCAACAACAATGTCCCATTTAATAGATTAGACTT
ACCCTTAAGTTGAGGTGTGTCTTTTTGTGGTGTGGCTTTTCTTTTCGACA
TCTTTAAATTGTGGGTACAGCTGTAAAAATTAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_408:163517..166085+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064112 ID=TCONS_00064112|Name=TCONS_00064112|organism=Clytia hemisphaerica|type=transcript|length=2569bp|location=Sequence derived from alignment at scaffold_408:163517..166085+ (Clytia hemisphaerica)
aaaaaaacgaaatttgtCAACAAGGCTGAATGAACAAGGTCAAGCAATCT
TAACTGTCAATGTATCCAAACAAACATACAATACCAATGGATGACATGAA
AACTAAATTGATGCTGAAGAAGATTAAAACAGCAAATTTGTCAACAAGGT
CAAAGCATCTATATGGACACACATACAATTCTCTGCTCAAAATAATCCAa
ggatttaaaaaaacaaaatactacatatacaaaacaaaaaataagatGCT
AATGCAACAAAAGAATATTAATATGTCAATGGTCATTCTAGTGtcattct
ttcttttcttttttctcaactGGTGTTAAATTCTCTTTGTCGAAATCTCC
AGTATTACCTGTGTCATCATCATCTCCAGTATTACCTGTGTCATCATCAT
CTCCAGTACTACCAGTGTTTTCTTCTTGTTCGTCCATGACCACAGTAGTA
GCTTTAACAAGGTCAAGTTTTGTAACAACACCACTTATTGACAAGTAATC
AATATCAAATTTGTTTGTCATCAAATATAATTGGATTTGATCATTACCCA
TTCCAATTGGCAACATGTTTTCCTTTACATCAAGTTTAATTGTAGATGTA
TTTGTATTTACAAAGATTGACCAAAACTTGACTTCGCTTGCTGCAATCAT
GACAGTTGCATCACAGGATGGGCAATCGATTGTTTTTTTAGAGGACTTGG
TGCAAGAAAAGACGTGGTTGCAGAATAAGCACTTTGTTGTATGTGTTAAT
TTAGCACCGACAATAGTGCAGTCATAATGGTGTGATACAGTTGAATGTTC
CTCAGGACTCTTGTAATCCTCCAGATCTTGAATCTTTTTGAATGCTGTAC
TACTTGTGGATGCTAGTTCAGGTTCATTATTCCAAATGCCACGCCTCATG
TTCGTCAGTATGTAAGAGTCACCATCATTAACAAGGGATGCATACTCTCT
CCAGAAAACAATGTTGATGTGGTCAGTATCATCGCAGATAATTCCTTTTC
TCATAGGGACATTCGCANTTTTTGAATGCTGTACTACTTGTGGATGCTAG
TTCAGGTTCATTATTCCAAATGCCACGCCTCATGTTCGTCAGTATGTAAG
AGTCACCATCGTTAACAAGGGATGCATACTCTCTCCAGAAAACAATGTTG
ATGTGGTCAGTATCATTGCAGATAATTCCTTTTCTCATAGGGACATTCGC
TCCCTCGACATCCACATTGTCAATATCATGCAATTTTAAGACACCTGTGA
TGTTTATATGTTCATTCAATTGTGTTTCATTTATTGCAGTAAAGATTTTT
GTGATTGGCAATTTGTAGTTGGGCTTGAAACCAAGCAATTCTTGTTTGAT
GACCGAATTTTCCATAATTTTGACAGTTCCATTGTCATATAATCCAGCTT
TGGTTATGTGGACACCGATTTGCTGATTTTCTGAATCTTCTAACAAACGC
CTCTTGTGAGGAGAAAAGCAAACAACACGTTTCACCTGGTTGTCTTCTGT
CTCCACATTCAGATTGAAAAACGGCTTTGCTATTTTGGTCTGCTTCATAG
GTGAAAGGTTTGATACATATCCTTTGAGTTCAATTTCTAAAAAGAGAATG
AAGACAAATCAAAAGACAACAACATAAGCATGAGGGAAAGTACATTGATT
CAAAAGTATAATTAATGTCAAAGCATATCAAAATAATATAGAGTCAAAAA
TATGTTTTAGTGTATTTTCGTTATTTTGCCAGGACAATATAAATTTAACT
AAGTAATAGATACACTGATTTATTCAGATATAAAATGGTTTCTTTATGTT
TTTATAGGAAAGGGGGTACCATAACAGAAGTATGTGTATTGTGAGAGGGC
TTAGGTGTAACAACCCATGACATGGATtacagaaaacattcacaatctaa
TCTCAGGTTAGTACGAGGGGCATGCTTCGAAAAATTCAACAGCTTTTAGA
CAGCTGAGGAATTGTTTCCACAAAGGGCCACAATGGATACCGAATACCAA
ATACAGACCGTTAAAAAAAATACCGACCGTTAATAAAAATACCGACCATT
AAGAGAAATGCCGAATTTATTGATTTCAACCTTATGTCCGAATACCTTAT
ACTgacctattttttcaaaagaaatactGAACACTGATAAAAAAATTGGC
CTATTACTGAGTACCGATTGACCCATACGCCCCCACAGCCACAACCAACC
CCATATTTATTTTGTTACAGACAGAATGCAGAAAATATTATGAATAAGCT
TGTCTACTTCTCCAGATATTGAATGAAACACAAAGCCGAAAGTGCTAAAA
GTGGACAATTTTGCCTTGAGGGATTAGTACTAGCAATTTTAAACACTGTT
TAGGCTTGCATATCAAGCACATGGTGGTCTTACAAACCACTAGAACTACA
CCAGAACGTACAATTTTGAGGATGAATGAAGCCAATATATCCAATTATGT
GCAACAACAATGTCCCATTTAATAGATTAGACTTACCCTTAAGTTGAGGT
GTGTCTTTTTGTGGTGTGGCTTTTCTTTTCGACATCTTTAAATTGTGGGT
ACAGCTGTAAAAATTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040196XLOC_040196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064112-exon-scaffold_408-1491911889:163517..164526TCONS_00064112-exon-scaffold_408-1491911889:163517..164526Clytia hemisphaericaexon
TCONS_00064112-exon-scaffold_408-1510915933:163517..164526TCONS_00064112-exon-scaffold_408-1510915933:163517..164526Clytia hemisphaericaexon
TCONS_00064112-exon-scaffold_408-1575043694:163517..164526TCONS_00064112-exon-scaffold_408-1575043694:163517..164526Clytia hemisphaericaexon
TCONS_00064112-exon-scaffold_408-1491911889:164711..166085TCONS_00064112-exon-scaffold_408-1491911889:164711..166085Clytia hemisphaericaexon
TCONS_00064112-exon-scaffold_408-1510915933:164711..166085TCONS_00064112-exon-scaffold_408-1510915933:164711..166085Clytia hemisphaericaexon
TCONS_00064112-exon-scaffold_408-1575043694:164711..166085TCONS_00064112-exon-scaffold_408-1575043694:164711..166085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_408supercontigscaffold_408:163517..166085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130327	0.212325	0.694456	0.713909	0	0	0	0.119803	0.079306	0.0734822	0.0649451	0.294514	0.0413546	0.0919529	0.342868	0.2337	0.184025	0.198504	0	0.148295	0.419182	0.119794	0.0970837	0	0	0.0443956	0.100249	0.373263	0.18796	0.176745
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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