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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063780 ID=TCONS_00063780|Name=TCONS_00063780|organism=Clytia hemisphaerica|type=transcript|length=2271bpRun BLAST on NCBI transcript from alignment at scaffold_400:62420..70150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063780 ID=TCONS_00063780|Name=TCONS_00063780|organism=Clytia hemisphaerica|type=transcript|length=7731bp|location=Sequence derived from alignment at scaffold_400:62420..70150+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00063780 vs. Swiss-Prot (Human)
Match: ZN836 (Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2) HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0 Identity = 343/697 (49.21%), Postives = 433/697 (62.12%), Query Frame = 2
Query: 233 KNIPNSKIVGSPQEADHKVETHVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALKVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKRFSSSSNLKKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCGYCEKGFRSSSDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLTKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFK------------------SDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 2269
K + NS +V Q V+T++ S+K+ + + T + +TH EKPY C C K SS+L HQ+ H EKP+KC+ CGKAF S L +H +HT +PY+CG C K FR +SDL H R+HTGEKPYKCN+C K FS S NL H HTGEKP+KC+ C K F+ S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K+ S SSNL H H+G KP+KCD C K F+ +S+L H IHTGE+PY C C+K F S L H R+HTGEKPYKCN+C K S + +L H HTGEKPYKC+ C K S L +H++ H EK ++C CGK F + S L H+RIHTGEQPYKC C K F S +L IH R HTGEKP++CN+C F + S L +HL HTG+KP+KC++CGK F D+ L H RIHTGEKP++C C KVF S L H + HTGEKPY+CN CGK ++Q +SL KH HTGE+P+ + + + C++C + F + L H R HTGE PY+C +C + F+ +SNL +H+ IHTGEKPYKC+ C K FR S L H IHTGEKPY C C K FR S L +H + HTG+KPY+CN CGK F + + L HQ HTGE
Sbjct: 169 KTVNNSSLVSPLQRILPSVQTNI-SKKYENEFLQLSLPTQLE-----KTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPYNCNEFGGAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHITGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRRIHTGEKPYKCNECGKVFRHQSTLARHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECGKAFIERSKLVYHQRNHTGE 859 HSP 2 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 340/659 (51.59%), Postives = 418/659 (63.43%), Query Frame = 2
Query: 293 THVESRKFSCAYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALKVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKRFSSSSNLKKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCGYCEKGFRSSSDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLTKHLLTHTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDLSDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 2269
H + + C C K FR +SDL H R+HTGEKPYKCN+C K+ S S NL HQ H GEKP+KC+ CGK F S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K FS SSNL H H+G KP+KCD C K F+ +S+L H IHTGE+PY C C+K F S L +H R+HTGEKPYKCN+C K S +S+L H HTGEKP+KCD C KAF+ S L H IHT E+ Y+C C K F +S L H R HTGE+PYKCN C K + S NL+ H HTGEKP++CN+C + S L +H H G+KP+KC++CGK F D+ L H RIHTGE+P++C C K F S L H + HTGEKPYKCNDC K ++ S+L KHL+ HTGEKP+ C+ G AF +S L + R TGEKP+KC++C + F + L H R HTGE PY+C CG+ F+ +++L +H+ HTGE+P+K C C K FR S L H HTGEKPY C++C KAF S L HQ +HTG+KPYKC+ C K F S L H R HTGEKPYKCI C K F S L H H+GEKPY+CN CGK+F + L KHQ HT E
Sbjct: 267 VHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGEKPYKCNDCGKAYTQRSSLTKHLIIHTGEKPYNCNEFGGAFIQSSKLARYHRNPTGEKPHKCSHCGRTFSHITGLTYHQRRHTGEMPYKCIECGQVFNSTSNLARHRRIHTGEKPYK----------CNECGKVFRHQSTLARHRSIHTGEKPYVCNECGKAFRVRSILVNHQKMHTGDKPYKCNECGKAFIERSKLVYHQRNHTGEKPYKCIECGKAFGRFSCLNKHQMIHSGEKPYKCNECGKSFISRSGLTKHQTKHTAE 915 HSP 3 Score: 442.195 bits (1136), Expect = 4.819e-141 Identity = 245/517 (47.39%), Postives = 305/517 (58.99%), Query Frame = 2
Query: 857 SDLKKHTRTHTGEKPYKCNDCEKTCSSSSNLT--KHLL--------------------------THTGEKPFKCDICDKAFRDTSTLKVHVRIHTGEQPYKCAYCEKGFRSSSDLKIHTRTHTGEKPYKCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSSNLKKHQLTHLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYKCGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDL------------------SDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 2269
S L + + T K Y+CN EKT ++SS ++ + +L TH EKP+ C C KAFR +S+L H +HT E+PYKC C K F S L IH HT KPY+C C K + +L H +HTGEKPYKCN+C K+ S S NL HQ H GEKP+KC+ CGK F S L H IHTGE+PY+C C K FR +S+L H R HTGEKPYKCN C K+FS SSNL H H+G KP+KCD CGK F+ +S+L H IHTGEKPY C C+KVF S L H R+HTGEKPY+CN CGK FSQ++ L H+ HTGE+P+K D + + + C C K F +S L H R HTGE+PY+C+ C K F+ S NL H+ IHTGEKP++C+ C FR S L H RIHTG+KPYKC C K F S +L +H R HTGEKP++CN CGK FS + L +H+ HTGE
Sbjct: 147 SRLTELQKFQTEGKIYECNQSEKTVNNSSLVSPLQRILPSVQTNISKKYENEFLQLSLPTQLEKTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLARHLRIHTGQKPYKCNVCGKVFNDSGNLSNHKRIHTGEKPFQCNECGKVFSYYSCLARHRKIHTGE 663 HSP 4 Score: 335.109 bits (858), Expect = 8.624e-101 Identity = 200/445 (44.94%), Postives = 252/445 (56.63%), Query Frame = 2
Query: 1157 KCNDCEKTCSSSINLTKHLLTHTGEKPYKCNDCEKTCSSSS--------------NLKKH------QL--------THLGEKPFKCDICGKAFCDTSALRVHVRIHTGEQPYK----------------------------CGYCEKGFRTSSDLKIHTRTHTGEKPYKCNDCEKTFSSSSNLKKHLLTHTGEKPFKCDICGKAFRDTSALKGHVRIHTGEKPYKCTYCEKVFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFAHTGERPFKSDL------------------SDNRTFSCTYCEKGFRTSSDLKIHTRTHTGEKPYECSDCEKAFSCSSNLKKHQSIHTGEKPYKCDICDKGFRVSSALKVHFRIHTGEKPYKCIYCEKGFRTSSDLKSHTRTHTGEKPYECNVCGKTFSQSNSLRKHQFTHTGE 2269
KC + + T S LT+ T K Y+CN EKT ++SS N+ K QL TH+ EKP+ C CGKAF +S+L H +HT E+PYK CG C K FR +SDL H R+HTGEKPYKCN+C K+FS S NL H HTGEKP+KC+ CGK F+ S L H IHTGEKPY+C C KVFR +S+L +H R HTGEKPY+CN+CGK+FSQS++L HQ H+G +P+K D + + ++C C+K F S L H R+HTGEKPY+C++C K FS +S+L H+ IHTGEKPYKCD C K F+ S L H IHT EK Y+C C K F +S L H R HTGE+PY+CNVCGK F+ S +L H+ HTGE
Sbjct: 135 KCIENQLTLSFQSRLTELQKFQTEGKIYECNQSEKTVNNSSLVSPLQRILPSVQTNISKKYENEFLQLSLPTQLEKTHIREKPYMCKGCGKAFRVSSSLINHQMVHTTEKPYKCNECGKAFHRGSLLTIHQIVHTRGKPYQCGVCGKIFRQNSDLVNHRRSHTGEKPYKCNECGKSFSQSYNLAIHQRIHTGEKPYKCNECGKTFKQGSCLTTHQIIHTGEKPYQCDICGKVFRQNSNLVNHQRIHTGEKPYKCNICGKSFSQSSNLATHQTVHSGNKPYKCDECGKTFKRSSSLTTHQIIHTGEKPYTCDVCDKVFSQRSQLARHQRSHTGEKPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGE 579 The following BLAST results are available for this feature:
BLAST of TCONS_00063780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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