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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063778 ID=TCONS_00063778|Name=TCONS_00063778|organism=Clytia hemisphaerica|type=transcript|length=2312bp
GAAATTCCAATTATATATAGCTTATTTTAATCGTttcattcttaattttt
taagtgAAACAAAGAATGTCTCTCTTTTAGTAGGCTAACAGTTATAAAAC
CACCCTTTAACCAAGGCGAGGAAAAGCCAAAAATTAGGACCAGGAGGGAC
TTAAGAAAGCATTGAGTAGAAGAGACAACTTAACGTTTTTTATTGCAGTG
TGAATTGGTACACTTTTACCAAGGGTTTATATCTAGaggttatttttgat
ttttttgaatattttgatatttaggACCTGGCGATGAGTTTCACCCCCAA
ATGATATCAAAACTTTGGTCCAGCTCATAGACTTCAAACACTTACACATT
TAAACTGGATTCACTtactaattaaaaaatttgatgtaTATTTTCAGAAT
TGAATTAAATATAATACATCTAAACTATATAAAAAATGGCAACATCAAAG
CTTGATTATTTAAAGAAGTACATGGATGCTGACTCGCAAAATGGCACAGA
TAAagttaaaaagaagaagaaaaagcacGGTGGCAAGAAATTACACAAta
taaaagtttttgatgcacaAGCTGATTACAAAAGTTTTGATAAGGATGAT
ACCCATGATGAACAGTTTGATTTGATTGAGGAAAAACCTGTCCTTTTTGC
TGAGGATGGTGCTACAATATTTACAAAAGAATATGAGgaaaaagaactaa
aaaagaaaaccaaTTGGAAGACAGTTGAGAGTAATAAAAATACCAATAAG
AAACGACATGATTCTAGTGGAGATGATTTATCCCCACCAAGAGCTGCACC
TAGAAGAAAGAGACATGATTCTGATGCTTCTGATATGTCTCCACCAAGAA
ATAGAAAGAAGCGACATGATTCAAGTGGTTCTGACATTTCCCCTGTACGA
AAAAATCAACCAAGAAGGAAGAGACATGATTCTTCAGGATCAGATTTTTC
ACCAGTTAGAACAAAACAAGATGATGATTCTGATCTGTCTCCTCAACGTA
TGCAAGCCAGAAGTGATTCTGATTTTTCTCCAGAACGACCCTCATCAAAA
AAGAACTCTAAGGGCAAAAGAAGTGAGATTAAACCTGAGATTGTAAAGAA
AGCTGGCTTACAGAGCGCTTCTGAATTGAGAAAAGAAAACGAAATGAGAC
GGTTACAAGAGaaagagaaatttaaaaaattagataAAGAAACTTCAGGA
AGAGGAGCAGAAACTGTACACAGAGATCGTTCCTCAGGAAAGAAAATCGA
TGTGAAATTGGAGGCCTTGAAAAAGCGTAGAGAAGAAGAGCAGAAATTTG
AAGAGCGTGAAAAACATGCTGTTTGGGGTAGAGGCGTAGCCCAAGAGAAA
GAACACGCAAAAAAACTTGAGGATGCCTTACATGAGATAAGTAAACCATT
AGCCAGGTATAAAGATGATAAGGATTTGGACTCGTTATTGAAGGCTCAAG
ACCGTGAAGGTGATCCTATGGCTGCCTACATGGCCAAAAAGAAAGCTAAG
CCTCTTAAAAATCAACCCTCAAAGCCAACTTATAAAGGACCTAAGCCAGC
ACCTAATCGATTTAATATCATGCCAGGTTTTAGGTATGATGGTGTTGATC
GGTCTAATGGGTTTGAAAAAGAACGTTTTGCTACTATAAACAAGATGAAA
ACGTTCAAAGAGGCGAAACACAAATGGAGTGTAGAAGATATGTAAACTTT
AGTGTCTTTTAAGTCTATTTAtaaatttataattattttttggtAAGGTT
ACATTTTATTAGAAATGACATGTTGTTCATCAGACTTTTGgctctttctt
tctttcataaTTATACCGGTTGACCCAAAAGagtggtttgaaattttaaa
agttagAGTACACTCTTCATAAtggaaaaatattcttcttATTAAATCTT
TATGGACAAGTTGTTAAGATCCTTCTTCGGGTCACcctgaaattttgaaa
cttcttTACACTTTTTGTACTTTCAGAGAAATAATTATAATAATAGATCA
AGACAAAAAAACATGATGGAGAAAATCTTAGAATCGTCAACGAATAATGG
TAAGACCTACCATATTATATCAAATaagttttcttttatatttCATAATG
TGTTGCCAGTGACAAGACTGCTTGTTTCTTCACATCTATATGAAACATAT
GTCATGActtcaaatataaaattttaccaTCTTATTAACTTTTATTGTCG
CTCTATCTACTTTAGAGGATTTGGTGACTGATAAATCAACAAATGAAGAA
GTAATTatcaaaatcgaaaatgaagaaaataacgAAGAAATACCCTGTTT
CAATTACAAAGG Run BLAST on NCBI transcript from alignment at scaffold_400:60445..62756+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063778 ID=TCONS_00063778|Name=TCONS_00063778|organism=Clytia hemisphaerica|type=transcript|length=2312bp|location=Sequence derived from alignment at scaffold_400:60445..62756+ (Clytia hemisphaerica)
GAAATTCCAATTATATATAGCTTATTTTAATCGTttcattcttaattttt
taagtgAAACAAAGAATGTCTCTCTTTTAGTAGGCTAACAGTTATAAAAC
CACCCTTTAACCAAGGCGAGGAAAAGCCAAAAATTAGGACCAGGAGGGAC
TTAAGAAAGCATTGAGTAGAAGAGACAACTTAACGTTTTTTATTGCAGTG
TGAATTGGTACACTTTTACCAAGGGTTTATATCTAGaggttatttttgat
ttttttgaatattttgatatttaggACCTGGCGATGAGTTTCACCCCCAA
ATGATATCAAAACTTTGGTCCAGCTCATAGACTTCAAACACTTACACATT
TAAACTGGATTCACTtactaattaaaaaatttgatgtaTATTTTCAGAAT
TGAATTAAATATAATACATCTAAACTATATAAAAAATGGCAACATCAAAG
CTTGATTATTTAAAGAAGTACATGGATGCTGACTCGCAAAATGGCACAGA
TAAagttaaaaagaagaagaaaaagcacGGTGGCAAGAAATTACACAAta
taaaagtttttgatgcacaAGCTGATTACAAAAGTTTTGATAAGGATGAT
ACCCATGATGAACAGTTTGATTTGATTGAGGAAAAACCTGTCCTTTTTGC
TGAGGATGGTGCTACAATATTTACAAAAGAATATGAGgaaaaagaactaa
aaaagaaaaccaaTTGGAAGACAGTTGAGAGTAATAAAAATACCAATAAG
AAACGACATGATTCTAGTGGAGATGATTTATCCCCACCAAGAGCTGCACC
TAGAAGAAAGAGACATGATTCTGATGCTTCTGATATGTCTCCACCAAGAA
ATAGAAAGAAGCGACATGATTCAAGTGGTTCTGACATTTCCCCTGTACGA
AAAAATCAACCAAGAAGGAAGAGACATGATTCTTCAGGATCAGATTTTTC
ACCAGTTAGAACAAAACAAGATGATGATTCTGATCTGTCTCCTCAACGTA
TGCAAGCCAGAAGTGATTCTGATTTTTCTCCAGAACGACCCTCATCAAAA
AAGAACTCTAAGGGCAAAAGAAGTGAGATTAAACCTGAGATTGTAAAGAA
AGCTGGCTTACAGAGCGCTTCTGAATTGAGAAAAGAAAACGAAATGAGAC
GGTTACAAGAGaaagagaaatttaaaaaattagataAAGAAACTTCAGGA
AGAGGAGCAGAAACTGTACACAGAGATCGTTCCTCAGGAAAGAAAATCGA
TGTGAAATTGGAGGCCTTGAAAAAGCGTAGAGAAGAAGAGCAGAAATTTG
AAGAGCGTGAAAAACATGCTGTTTGGGGTAGAGGCGTAGCCCAAGAGAAA
GAACACGCAAAAAAACTTGAGGATGCCTTACATGAGATAAGTAAACCATT
AGCCAGGTATAAAGATGATAAGGATTTGGACTCGTTATTGAAGGCTCAAG
ACCGTGAAGGTGATCCTATGGCTGCCTACATGGCCAAAAAGAAAGCTAAG
CCTCTTAAAAATCAACCCTCAAAGCCAACTTATAAAGGACCTAAGCCAGC
ACCTAATCGATTTAATATCATGCCAGGTTTTAGGTATGATGGTGTTGATC
GGTCTAATGGGTTTGAAAAAGAACGTTTTGCTACTATAAACAAGATGAAA
ACGTTCAAAGAGGCGAAACACAAATGGAGTGTAGAAGATATGTAAACTTT
AGTGTCTTTTAAGTCTATTTAtaaatttataattattttttggtAAGGTT
ACATTTTATTAGAAATGACATGTTGTTCATCAGACTTTTGgctctttctt
tctttcataaTTATACCGGTTGACCCAAAAGagtggtttgaaattttaaa
agttagAGTACACTCTTCATAAtggaaaaatattcttcttATTAAATCTT
TATGGACAAGTTGTTAAGATCCTTCTTCGGGTCACcctgaaattttgaaa
cttcttTACACTTTTTGTACTTTCAGAGAAATAATTATAATAATAGATCA
AGACAAAAAAACATGATGGAGAAAATCTTAGAATCGTCAACGAATAATGG
TAAGACCTACCATATTATATCAAATaagttttcttttatatttCATAATG
TGTTGCCAGTGACAAGACTGCTTGTTTCTTCACATCTATATGAAACATAT
GTCATGActtcaaatataaaattttaccaTCTTATTAACTTTTATTGTCG
CTCTATCTACTTTAGAGGATTTGGTGACTGATAAATCAACAAATGAAGAA
GTAATTatcaaaatcgaaaatgaagaaaataacgAAGAAATACCCTGTTT
CAATTACAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063778-exon-scaffold_400-1491911889:60445..62756 | TCONS_00063778-exon-scaffold_400-1491911889:60445..62756 | Clytia hemisphaerica | exon |
| TCONS_00063778-exon-scaffold_400-1510915933:60445..62756 | TCONS_00063778-exon-scaffold_400-1510915933:60445..62756 | Clytia hemisphaerica | exon |
| TCONS_00063778-exon-scaffold_400-1575043694:60445..62756 | TCONS_00063778-exon-scaffold_400-1575043694:60445..62756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_400 | supercontig | scaffold_400:60445..62756 + |
Blast
BLAST of TCONS_00063778 vs. Swiss-Prot (Human)
Match: BUD13 (BUD13 homolog OS=Homo sapiens GN=BUD13 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.911e-40 Identity = 144/336 (42.86%), Postives = 205/336 (61.01%), Query Frame = 1
Query: 781 SPPRAAPRRKRH--DSDASDMSPPRNRKKRHDSSGSDISPVRKNQPR-----RKRHDSSG-------SDFSPVRTKQ-----DDDSDLSPQRMQAR---SDSDFSPERPSSKKNSKGKRSEIKPEIVKKAGLQSASELRKENEMRRL-----QEKEKFKKLDKETSG-----RGAETVHRDRSSGKKIDVXXXXXXXXXXXXXXXXXXXXHAVWGRGVAQEKEHAKKLEDALHEISKPLARYXXXXXXXXXXXAQDREGDPXXXXXXXXXXXPLKNQPSKPTYKGPKPAPNRFNIMPGFRYDGVDRSNGFEKERFATINKMKTFKEAKHKWSVEDM 1692
+P RA+ + H +S AS +S P+N K +D DISP RK Q + +K+ DS G SD S R KQ D DSDLSP R + R SDSD SP P ++ +K S++ P + + A+ + + + +E+++ K+ D+ET + AETV RD+S G+K ++KLE L++RR+ E+ E E +A WG+G+AQ ++ + +EDA+ E+ KPLARY DD+DLD +L+ Q+REGDPMA ++ K KAK KN+ +P Y GP P PNRFNI PG+R+DGVDRSNGFE++RFA + K +E +KWSVEDM
Sbjct: 290 APERASSKTSPHWKESGASHLSFPKNSKYEYDP---DISPPRKKQAKSHFGDKKQLDSKGDCQKATDSDLSSPRHKQSPGHQDSDSDLSPPRNRPRHRSSDSDLSP--PRRRQRTKSSDSDLSPPRRSQPPGKKAAHMYSGAKTGLVLTDIQREQQELKEQDQETMAFEAEFQYAETVFRDKS-GRKRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKNKKVRPRYSGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 619
The following BLAST results are available for this feature:
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