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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062559 ID=TCONS_00062559|Name=TCONS_00062559|organism=Clytia hemisphaerica|type=transcript|length=2744bpRun BLAST on NCBI protein sequence of TCONS_00062559-protein >TCONS_00062559-protein ID=TCONS_00062559-protein|Name=TCONS_00062559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp MTSGVANSKAGSWTLNFEYPLPTTVSQCYSFLPKMAEHPKLTPTASSEMMRun BLAST on NCBI transcript from alignment at scaffold_369:258395..304732+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062559 ID=TCONS_00062559|Name=TCONS_00062559|organism=Clytia hemisphaerica|type=transcript|length=46338bp|location=Sequence derived from alignment at scaffold_369:258395..304732+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_369:258395..304732+ >TCONS_00062559 ID=TCONS_00062559|Name=TCONS_00062559|organism=Clytia hemisphaerica|type=CDS|length=20076bp|location=Sequence derived from alignment at scaffold_369:258395..304732+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062559 vs. Swiss-Prot (Human)
Match: PDCD4 (Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2) HSP 1 Score: 281.952 bits (720), Expect = 1.899e-84 Identity = 148/338 (43.79%), Postives = 214/338 (63.31%), Query Frame = 3
Query: 573 EIYEEECNDPQDPNYDSETDKPEDLVMQEVIPDLTSAEFDVVVTPLLQEFFEHGITFEVIEPLKELNITHLKHRIVYLLVTLALEKKGAQRELASVLLSDLYGERLVCEQDMELGFQALMNTLPDLQLDTPDATTILGQFMARCIADDCLNPIYIREHLEHPNDIQ-RQALTTANTYLQSRHGLVRLDTVWGFGGGNRPVKTLIKEIVLMIREYLASKDMAEAERCLSDLDVPHFHHEIVYEAIQIALENNSDVIIEAIVGLLKHFFTCGMVSIDQMNSGFKRIFESMDDIVIDVPRAYKYLDVVLDKSCRAGIITLAMRQSAPSRGRKRFVSEGDFG 1583
++Y+ E D +DPNYD D E+ V + V+ L F+ +TP++QE+FEHG T EV E L++LN+ +K + L V+LALE K + RE+ S LLSDL G ++ D+E F L+ LP+L LDTP A ++GQF+AR + D L YI + + +Q R AL A L G R D+VWG GGG + V L+KEI ++++EYL S D++EAE CL +L+VPHFHHE+VYEAI + LE+ + + I+ LLK + +++DQM G++RI+ + DI +DVP +Y L+ +++ +AGII+ +R PSRGRKRFVSEGD G
Sbjct: 129 QVYDVEEVDVKDPNYD---DDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGT-VMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGG 462 The following BLAST results are available for this feature:
BLAST of TCONS_00062559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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