TCONS_00062298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062298
Unique NameTCONS_00062298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062298 ID=TCONS_00062298|Name=TCONS_00062298|organism=Clytia hemisphaerica|type=transcript|length=492bp
GCGCTCTGTTTTGGGTTCTGTgtaatttttacgaaaaatataaagtaaac
aaactttctGATTGGATAAAATACTAAACAGTAGAccctttcataaatta
cgtcacgaacatcacttgcctcgtattcgaACAATTACCATCATGATCAT
GTCCCTTGAGACAACAAATGattgaataggaagtagttttaataaaatcc
acttgaagttaatcaccatggcaataaaacaaaacgaggcaagtgatgtt
cgtgacgtaatttacaAAAAGGTCTATCTGAGGTTCCGATTACAAAAATG
CTTAGAGAATAATCATCTTATTAAGTTCTTGATTCTTTCTTCTTAGCAAT
TATAAAGGTGTTTTAGGTCAAGTTAAGTTATGCAAGTTACTTGGAAATTT
GTCATTATGGAAAAAACAACGGATTTTGAAAGACCCGGAATACCCATGAA
CCGGTCATATCAGCATATCCCCATCTACATGAAAAAATGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_362:92084..92575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062298 ID=TCONS_00062298|Name=TCONS_00062298|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_362:92084..92575 (Clytia hemisphaerica)
CTGCATTTTTTCATGTAGATGGGGATATGCTGATATGACCGGTTCATGGG
TATTCCGGGTCTTTCAAAATCCGTTGTTTTTTCCATAATGACAAATTTCC
AAGTAACTTGCATAACTTAACTTGACCTAAAACACCTTTATAATTGCTAA
GAAGAAAGAATCAAGAACTTAATAAGATGATTATTCTCTAAGCATTTTTG
TAATCGGAACCTCAGATAGACCTTTTtgtaaattacgtcacgaacatcac
ttgcctcgttttgttttattgccatggtgattaacttcaagtggatttta
ttaaaactacttcctattcaatCATTTGTTGTCTCAAGGGACATGATCAT
GATGGTAATTGTtcgaatacgaggcaagtgatgttcgtgacgtaatttat
gaaagggTCTACTGTTTAGTATTTTATCCAATCagaaagtttgtttactt
tatatttttcgtaaaaattacACAGAACCCAAAACAGAGCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039037XLOC_039037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062298-exon-scaffold_362-1491911889:92084..92575TCONS_00062298-exon-scaffold_362-1491911889:92084..92575Clytia hemisphaericaexon
TCONS_00062298-exon-scaffold_362-1510915933:92084..92575TCONS_00062298-exon-scaffold_362-1510915933:92084..92575Clytia hemisphaericaexon
TCONS_00062298-exon-scaffold_362-1575043694:92084..92575TCONS_00062298-exon-scaffold_362-1575043694:92084..92575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:92084..92575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125499	0.122324	0.283935	0.277933	1.85965	1.33786	1.61295	1.51325	0.423114	0.916779	0.12725	0.503431	0.334442	0.0865858	0.570888	0.306299	0.282662	0.386106	0	0	1.33443	1.95292	0.71946	0.785511	0.269424	1.32303	1.8949	1.10316	0.278991	0.425836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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