TCONS_00062296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062296
Unique NameTCONS_00062296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062296 ID=TCONS_00062296|Name=TCONS_00062296|organism=Clytia hemisphaerica|type=transcript|length=385bp
GTTGAAATAGTGATTGAGGTTTTGGTCGGTTCAATGAGATTAGTTGacat
gtttggtaaatttgaaCTGGTAGAAACTTCTTTAATTATTTGTGTTTCGA
TTGAAGATTCCGGATTTGAGATAGCTGTTGATGCCACTAGGTTATTTGTT
GAACCGATAGGGAGATCTTTGTAGGATGTTTGGAATGTTGAATGGATTGT
TGATGTAGTTGTGAATGAATTGGAACTTTGAATGGCAGAGTTAATCGACG
ATGGAGAAAGTGTTGGTGAAAAGCCTGTTGAGGATGCTAGAACTGTGGTT
TGATCCATGTACGGTGAAGACGATAGAAAGCTGGTATAGTGGTCGATGCT
TGACGAGGATGTGAGCAAGCTTTCAAATGATGATT
Run BLAST on NCBI

protein sequence of TCONS_00062296-protein

>TCONS_00062296-protein ID=TCONS_00062296-protein|Name=TCONS_00062296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
SSFESLLTSSSSIDHYTSFLSSSPYMDQTTVLASSTGFSPTLSPSSINSA
IQSSNSFTTTSTIHSTFQTSYKDLPIGSTNNLVASTAISNPESSIETQII
KEVSTSSNLPNMSTNLIEPTKTSITIS
Run BLAST on NCBI

transcript from alignment at scaffold_362:16927..17311

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062296 ID=TCONS_00062296|Name=TCONS_00062296|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_362:16927..17311 (Clytia hemisphaerica)
AATCATCATTTGAAAGCTTGCTCACATCCTCGTCAAGCATCGACCACTAT
ACCAGCTTTCTATCGTCTTCACCGTACATGGATCAAACCACAGTTCTAGC
ATCCTCAACAGGCTTTTCACCAACACTTTCTCCATCGTCGATTAACTCTG
CCATTCAAAGTTCCAATTCATTCACAACTACATCAACAATCCATTCAACA
TTCCAAACATCCTACAAAGATCTCCCTATCGGTTCAACAAATAACCTAGT
GGCATCAACAGCTATCTCAAATCCGGAATCTTCAATCGAAACACAAATAA
TTAAAGAAGTTTCTACCAGttcaaatttaccaaacatgtCAACTAATCTC
ATTGAACCGACCAAAACCTCAATCACTATTTCAAC

Coding sequence (CDS) from alignment at scaffold_362:16927..17311

>TCONS_00062296 ID=TCONS_00062296|Name=TCONS_00062296|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_362:16927..17311 (Clytia hemisphaerica)
TCATCATTTGAAAGCTTGCTCACATCCTCGTCAAGCATCGACCACTATAC
CAGCTTTCTATCGTCTTCACCGTACATGGATCAAACCACAGTTCTAGCAT
CCTCAACAGGCTTTTCACCAACACTTTCTCCATCGTCGATTAACTCTGCC
ATTCAAAGTTCCAATTCATTCACAACTACATCAACAATCCATTCAACATT
CCAAACATCCTACAAAGATCTCCCTATCGGTTCAACAAATAACCTAGTGG
CATCAACAGCTATCTCAAATCCGGAATCTTCAATCGAAACACAAATAATT
AAAGAAGTTTCTACCAGttcaaatttaccaaacatgtCAACTAATCTCAT
TGAACCGACCAAAACCTCAATCACTATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039035XLOC_039035Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062296-proteinTCONS_00062296-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062296-exon-scaffold_362-1491911889:16927..17311TCONS_00062296-exon-scaffold_362-1491911889:16927..17311Clytia hemisphaericaexon
TCONS_00062296-exon-scaffold_362-1510915933:16927..17311TCONS_00062296-exon-scaffold_362-1510915933:16927..17311Clytia hemisphaericaexon
TCONS_00062296-exon-scaffold_362-1575043694:16927..17311TCONS_00062296-exon-scaffold_362-1575043694:16927..17311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:16927..17311 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.446589	0	0	0	0.242623	0	0	0	0.13425	1.07251	0.417678	0	0.245672	0	0.155102	5.78561	0.896923	0.194897	0.285192	0	0.210127	0.432851	1.54524	0	0	0.447472	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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