TCONS_00062106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062106
Unique NameTCONS_00062106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062106 ID=TCONS_00062106|Name=TCONS_00062106|organism=Clytia hemisphaerica|type=transcript|length=984bp
AGCTTTATCAAAAACTCGAAATTTTATCTTGATTGATCGATATCGTCCGT
AGTGATATCATTAGTGGTTTACTATCTTACCAATGCAATTACTGTCATTC
TTCTTTAAAAAGATCCTCGTTAAAAACTCATTATCACTTATCGACGAATT
TCGTACACTGCACTGTCCGATACGCAACCAACAAAACTGCAAAGAATCAT
TCCTATATTTAATGCCGTTTAAACAGTATGGTTTGTTGCCGGGCAACGGT
TGCATATCAAAATGCAGACCGTCATCACGGAGACGTAACCCTGCATAACC
GAAAATAATAGACTGTAAATAACCGCCAGCCGCTGTAATAAAATTAGCGG
CGCCATCTCCCTTGCGAATTTCACTCCAGACGTGGAATGGTGGTTGTatg
ttttcataatttttctgaAAGGCTTGGTCTGCATTTTGTTTTTCCCCAAT
CTCATTCCAACCGATTGAAAACATGGAATGTGTCATAGCTGGTCCGTTCG
AGTCTGTAATTTTACCGTATAAAAATAGGTCATTTTTACGCGTATCTTTG
TCCATTGGGTAcatcaaaggaaaatttatcaaaattgtgTCAGCTTGCTT
GACGACAGATTTTGGGTCTGTAATATCAAAACCATCATATTCCGGATGAT
ATTGTAACTTTTCATCAAAAGGAATATAAATCGAAGCAGCGATGTCTTCC
CAATGACTCGGAATTTTTATGTCAAGTAAGTCTGCAAATTTGATTGCTAA
ACGAAAGTTGATTTGAGCAATGACATTTGTATACACTGAATTATTGACTG
GATAATGGTATTCATCAGGAGGCATTACGTCATTAATCCAGTATGTCCCA
GACTCCTTTTCAAACGTGACACGTGATTCCCAAAAGACTGCTGATTGGTA
GATAATAGGAAATCCATAATTTCGAATCCAGTCTAAATCACCGGTTACCG
AGTAATATTGGTTGACAGCAAATGCGATATCACC
Run BLAST on NCBI

protein sequence of TCONS_00062106-protein

>TCONS_00062106-protein ID=TCONS_00062106-protein|Name=TCONS_00062106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
GDIAFAVNQYYSVTGDLDWIRNYGFPIIYQSAVFWESRVTFEKESGTYWI
NDVMPPDEYHYPVNNSVYTNVIAQINFRLAIKFADLLDIKIPSHWEDIAA
SIYIPFDEKLQYHPEYDGFDITDPKSVVKQADTILINFPLMYPMDKDTRK
NDLFLYGKITDSNGPAMTHSMFSIGWNEIGEKQNADQAFQKNYENIQPPF
HVWSEIRKGDGAANFITAAGGYLQSIIFGYAGLRLRDDGLHFDMQPLPGN
KPYCLNGIKYRNDSLQFCWLRIGQCSVRNSSISDNEFLTRIFLKKNDSNC
IGKIVNH
Run BLAST on NCBI

transcript from alignment at scaffold_361:588043..589026

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062106 ID=TCONS_00062106|Name=TCONS_00062106|organism=Clytia hemisphaerica|type=transcript|length=984bp|location=Sequence derived from alignment at scaffold_361:588043..589026 (Clytia hemisphaerica)
GGTGATATCGCATTTGCTGTCAACCAATATTACTCGGTAACCGGTGATTT
AGACTGGATTCGAAATTATGGATTTCCTATTATCTACCAATCAGCAGTCT
TTTGGGAATCACGTGTCACGTTTGAAAAGGAGTCTGGGACATACTGGATT
AATGACGTAATGCCTCCTGATGAATACCATTATCCAGTCAATAATTCAGT
GTATACAAATGTCATTGCTCAAATCAACTTTCGTTTAGCAATCAAATTTG
CAGACTTACTTGACATAAAAATTCCGAGTCATTGGGAAGACATCGCTGCT
TCGATTTATATTCCTTTTGATGAAAAGTTACAATATCATCCGGAATATGA
TGGTTTTGATATTACAGACCCAAAATCTGTCGTCAAGCAAGCTGAcacaa
ttttgataaattttcctttgatgTACCCAATGGACAAAGATACGCGTAAA
AATGACCTATTTTTATACGGTAAAATTACAGACTCGAACGGACCAGCTAT
GACACATTCCATGTTTTCAATCGGTTGGAATGAGATTGGGGAAAAACAAA
ATGCAGACCAAGCCTTtcagaaaaattatgaaaacatACAACCACCATTC
CACGTCTGGAGTGAAATTCGCAAGGGAGATGGCGCCGCTAATTTTATTAC
AGCGGCTGGCGGTTATTTACAGTCTATTATTTTCGGTTATGCAGGGTTAC
GTCTCCGTGATGACGGTCTGCATTTTGATATGCAACCGTTGCCCGGCAAC
AAACCATACTGTTTAAACGGCATTAAATATAGGAATGATTCTTTGCAGTT
TTGTTGGTTGCGTATCGGACAGTGCAGTGTACGAAATTCGTCGATAAGTG
ATAATGAGTTTTTAACGAGGATCTTTTTAAAGAAGAATGACAGTAATTGC
ATTGGTAAGATAGTAAACCACTAATGATATCACTACGGACGATATCGATC
AATCAAGATAAAATTTCGAGTTTTTGATAAAGCT

Coding sequence (CDS) from alignment at scaffold_361:588043..589026

>TCONS_00062106 ID=TCONS_00062106|Name=TCONS_00062106|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_361:588043..589026 (Clytia hemisphaerica)
GGTGATATCGCATTTGCTGTCAACCAATATTACTCGGTAACCGGTGATTT
AGACTGGATTCGAAATTATGGATTTCCTATTATCTACCAATCAGCAGTCT
TTTGGGAATCACGTGTCACGTTTGAAAAGGAGTCTGGGACATACTGGATT
AATGACGTAATGCCTCCTGATGAATACCATTATCCAGTCAATAATTCAGT
GTATACAAATGTCATTGCTCAAATCAACTTTCGTTTAGCAATCAAATTTG
CAGACTTACTTGACATAAAAATTCCGAGTCATTGGGAAGACATCGCTGCT
TCGATTTATATTCCTTTTGATGAAAAGTTACAATATCATCCGGAATATGA
TGGTTTTGATATTACAGACCCAAAATCTGTCGTCAAGCAAGCTGAcacaa
ttttgataaattttcctttgatgTACCCAATGGACAAAGATACGCGTAAA
AATGACCTATTTTTATACGGTAAAATTACAGACTCGAACGGACCAGCTAT
GACACATTCCATGTTTTCAATCGGTTGGAATGAGATTGGGGAAAAACAAA
ATGCAGACCAAGCCTTtcagaaaaattatgaaaacatACAACCACCATTC
CACGTCTGGAGTGAAATTCGCAAGGGAGATGGCGCCGCTAATTTTATTAC
AGCGGCTGGCGGTTATTTACAGTCTATTATTTTCGGTTATGCAGGGTTAC
GTCTCCGTGATGACGGTCTGCATTTTGATATGCAACCGTTGCCCGGCAAC
AAACCATACTGTTTAAACGGCATTAAATATAGGAATGATTCTTTGCAGTT
TTGTTGGTTGCGTATCGGACAGTGCAGTGTACGAAATTCGTCGATAAGTG
ATAATGAGTTTTTAACGAGGATCTTTTTAAAGAAGAATGACAGTAATTGC
ATTGGTAAGATAGTAAACCACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038929XLOC_038929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062106-exon-scaffold_361-1491911889:588043..589026TCONS_00062106-exon-scaffold_361-1491911889:588043..589026Clytia hemisphaericaexon
TCONS_00062106-exon-scaffold_361-1510915933:588043..589026TCONS_00062106-exon-scaffold_361-1510915933:588043..589026Clytia hemisphaericaexon
TCONS_00062106-exon-scaffold_361-1575043694:588043..589026TCONS_00062106-exon-scaffold_361-1575043694:588043..589026Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062106-proteinTCONS_00062106-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:588043..589026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.236	0.982091	0.207328	0.304256	0.555604	0.487829	2.17762	1.65297	2.04453	1.62461	3.5248	1.89024	4.53635	4.86914	3.9771	6.86233	1.61516	3.20531	2.43314	1.22213	1.15077	0.84196	3.35922	3.43577	3.19472	3.94783	1.25541	2.41165	5.33502	3.52016
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005195Glyco_hydro_65_M
IPR0089286-hairpin_glycosidase-like
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00062106 vs. Swiss-Prot (Human)
Match: PGGHG (Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens GN=PGGHG PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 3.321e-63
Identity = 107/268 (39.93%), Postives = 153/268 (57.09%), Query Frame = -1 
Query:  184 GDIAFAVNQYYSVTGDLDWIRNYG-FPIIYQSAVFWESRVTFEKESGTYWINDVMPPDEYHYPVNNSVYTNVIAQINFRLAIKFADLLDIKIPSHWEDIAASIYIPFDEKLQYHPEYDGFDITDPKSVVKQADTILINFPLMYPMDKDTRKNDLFLYGKITDSNGPAMTHSMFSIGWNEIGEKQNADQAFQKNYENIQPPFHVWSEIRKGDGAANFITAAGGYLQSIIFGYAGLRLRDDGLHFDMQPLPGNKPYCLNGIKYRNDSLQF 984
            G +  A   YY  T DL   R  G + ++   A FW SRV +      Y +  VM PDEYH  VNNSVYTNV+ Q + R A   A  L + IPS W  +A  I +PFD +  +HPE+DG++   P  VVKQAD +L+ +P+ + +  D R+ +L +Y  +T   GPAMT SMF++GW E+ +   A     +++ N+  PF VW+E   G GA NF+T  GG+LQ+++FG  G R+   G+ FD   L G     ++GI Y+ + L F
Sbjct:  372 GAVVLAFELYYHTTQDLQLFREAGGWDVVRAVAEFWCSRVEWSPREEKYHLRGVMSPDEYHSGVNNSVYTNVLVQNSLRFAAALAQDLGLPIPSQWLAVADKIKVPFDVEQNFHPEFDGYE---PGEVVKQADVVLLGYPVPFSLSPDVRRKNLEIYEAVTSPQGPAMTWSMFAVGWMELKDAVRARGLLDRSFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFRVTRAGVTFDPVCLSGISRVSVSGIFYQGNKLNF 636
The following BLAST results are available for this feature:
BLAST of TCONS_00062106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGGHG3.321e-6339.93Protein-glucosylgalactosylhydroxylysine glucosidas... [more]
back to top