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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061311 ID=TCONS_00061311|Name=TCONS_00061311|organism=Clytia hemisphaerica|type=transcript|length=3601bpRun BLAST on NCBI transcript from alignment at scaffold_355:362685..380834- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061311 ID=TCONS_00061311|Name=TCONS_00061311|organism=Clytia hemisphaerica|type=transcript|length=18150bp|location=Sequence derived from alignment at scaffold_355:362685..380834- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061311 vs. Swiss-Prot (Human)
Match: MTG2 (Mitochondrial ribosome-associated GTPase 2 OS=Homo sapiens GN=MTG2 PE=1 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.183e-65 Identity = 131/316 (41.46%), Postives = 194/316 (61.39%), Query Frame = 1
Query: 352 KTFVDWKRIYIKSGNGGNGSASFVHSRDHKXXXXXXXXXXXXX--VIFIADDAYSQLSHLEHQYRAKNGGNGSKKNRHGKNGEHLHIQIPVGTVITNSNSDEELADLTRKGETYTVAKGGSKGLGNVHFKSPTRVRPREFTEGGAGEEIFVELELKSIADIGLVGFPNAGKSSLLHCISRATPKIGDYPFTTLKPNIGVMNLKDDLTVSVADIPGIVKGAHENIGLGHEFLRHVERCHMLMYVMDCSSPDMLSQFEILKTELDLYKAGLSTISSIFIANKIDLIQDQDEMRNNIQQHVNMPVVPLSAKFSQNIEEL 1293
+ FVD++R+ + GNGG G++ F HS K G G VI D LS + +Y+ +G +G KN G++G L+I++PVGT++ +ADL+ G+ Y A GG+ G GN F + P T G G++ + LELK++A G+VGFPNAGKSSLL IS A P + YPFTTLKP++G+++ + L ++VADIPGI++GAH+N GLG FLRH+ERC L++V+D S P+ +Q + LK EL++Y+ GLS +ANKIDL + Q + + ++ H+ V+ LSA +N+E+L
Sbjct: 70 RYFVDYRRVLVCGGNGGAGASCF-HSEPRKEFGGPDGGDGGNGGHVILRVDQQVKSLSSVLSRYQGFSGEDGGSKNCFGRSGAVLYIRVPVGTLVKEGG--RVVADLSCVGDEYIAALGGAGGKGNRFFLANNNRAPVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANL-SQLRDHLGQEVIVLSALTGENLEQL 381 The following BLAST results are available for this feature:
BLAST of TCONS_00061311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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