TCONS_00060846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060846
Unique NameTCONS_00060846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060846 ID=TCONS_00060846|Name=TCONS_00060846|organism=Clytia hemisphaerica|type=transcript|length=261bp
CAGTCACATGTCCGTCAGGCCATGAGCTATGTTTAGAAATGATGTTAAGG
AAGAGTCTCTTCTTGGCTTAAATTTAACAAATCCAatgttatttccaaaa
tttatctattaatatttattttctttctaactTTCAGGTAAAACCATAAT
ATACCGACGGAACACGATTGAAGGATGATTAAAATCACGATACCAAACAA
AAGACGAAGACGCcatcttatttttcaattttttaatttttaatctttta
ttagaattttc
Run BLAST on NCBI

transcript from alignment at scaffold_349:346289..346679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060846 ID=TCONS_00060846|Name=TCONS_00060846|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at scaffold_349:346289..346679- (Clytia hemisphaerica)
CAGTCACATGTCCGTCAGGCCATGAGCTATGTTTAGAAATGATGTTAAGG
AAGAGTCTCTTCTTGGCTTAAATTTAACAAATCCAATGTTATTTCCAAAA
TTTATCTATTAATATTTATTTTCTTTCTAACTTTCAGGTAAAACCATAAT
ATACCGACGGAATACTGACACACAATTGAAGGATNTGGCTTAAATTTAAC
AAATCCAATGTTATTTCCAAAATTTATCTATTAATATTTATTTTCTTTCT
AACTTTCAGGTAAAACCATAATATACCGACGGAATACTGACACACGATTG
AAGGATGATTAAAATCACGATACCAAACAAAAGACGAAGACGCCATCTTA
TTTTTCAATTTTTTAATTTTTAATCTTTTATTAGAATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038210XLOC_038210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060846-exon-scaffold_349-1575043694:346519..346679TCONS_00060846-exon-scaffold_349-1575043694:346519..346679Clytia hemisphaericaexon
TCONS_00060846-exon-scaffold_349-1575043694:346289..346388TCONS_00060846-exon-scaffold_349-1575043694:346289..346388Clytia hemisphaericaexon
TCONS_00060846-exon-scaffold_349-1510915933:346519..346679TCONS_00060846-exon-scaffold_349-1510915933:346519..346679Clytia hemisphaericaexon
TCONS_00060846-exon-scaffold_349-1510915933:346289..346388TCONS_00060846-exon-scaffold_349-1510915933:346289..346388Clytia hemisphaericaexon
TCONS_00060846-exon-scaffold_349-1491911889:346519..346679TCONS_00060846-exon-scaffold_349-1491911889:346519..346679Clytia hemisphaericaexon
TCONS_00060846-exon-scaffold_349-1491911889:346289..346388TCONS_00060846-exon-scaffold_349-1491911889:346289..346388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:346289..346679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.646634	1.26114	1.4643	0	68.4547	49.7819	13.3016	22.9588	7.84321	0.717545	2.83575	1.72262	1.29017	2.6797	1.10154	0.39404	0	0.995091	6.18648	17.2632	1.2504	0	0	0.674056	0	1.23922	4.43332	4.57362	10.5175	6.76817
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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