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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060805 ID=TCONS_00060805|Name=TCONS_00060805|organism=Clytia hemisphaerica|type=transcript|length=494bp
CTGGGTATTTCCCTTGGCAAGATGAGACGCTGATGGAAGGATGTTGCTTG
AAATATGAAATGGAAGATGAGAGTGACCGCGCGACATTTGATGGAAAAGG
AGATTCACATACAGGATCAGACAGCGGTAGAACCTCAACATCGTCACCTT
CTGAGATTCAAATCCTGACACCCTTCCATTCAGGAATGTCCCCTCCAACA
ATGTTGGTATCATCGTGCTGTGATAAAGACCATGGGGACATTGGTTCCCT
CTCACCTGCATCTAGCTGCCACCATGAGGTATCAAGCCCGTTCTTCTCTC
GGTCTAGCTCCAGTCAGGATGGATTAGGCCCGATCTCACCTGAATCTAAC
CATCACAGAGATTTACCGAAATCCACCCTATCCGCACATAGCTACAACCA
TATGGTAGCAGGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAGGAAG
AAATGATACCATCCCCTTCCGGGCAACATCAACAAAAAAGCAGT Run BLAST on NCBI protein sequence of TCONS_00060805-protein >TCONS_00060805-protein ID=TCONS_00060805-protein|Name=TCONS_00060805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
GYFPWQDETLMEGCCLKYEMEDESDRATFDGKGDSHTGSDSGRTSTSSPS
EIQILTPFHSGMSPPTMLVSSCCDKDHGDIGSLSPASSCHHEVSSPFFSR
SSSSQDGLGPISPESNHHRDLPKSTLSAHSYNHMVAGSLSPASSYHHEEE
MIPSPSGQHQQKSS Run BLAST on NCBI transcript from alignment at scaffold_349:811467..816314+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060805 ID=TCONS_00060805|Name=TCONS_00060805|organism=Clytia hemisphaerica|type=transcript|length=4848bp|location=Sequence derived from alignment at scaffold_349:811467..816314+ (Clytia hemisphaerica)
CTGGGTATTTCCCTTGGCAAGATGAGACGCTGATGGAAGGATGTTGCTTG
AAATATGAAATGGAAGATGAGAGTGACCGCGCGACATTTGATGGAAAAGG
AGATTCACATACAGgtaatttgaaacattttttctttgcaCGAGTGTGTC
TTGAGTTTAccattagcctatttcatacaGGTAATCTGAAACATTGTTTT
TTTGGTATGGGTGTGCATCGATGCAGGCTGCACGCCTCCcttctgatatg
ttttgatgtagGGGATGATAGTCGTGTTAGAAATTCCCTatccgagagtt
accccaatTTTTGGGTAACcggttttaattttcttaagaaggtttagaaa
tccaatgattgtattaacctctagccattcaaatttttaattcagattta
atgaaataataaagatctttcataaaaaactttctaatCATCTAATCAAG
CAAATCCAAAAGATTTCCAAAACCTAAAAAACTAAGacgggggtaactct
cggacgggaattttatacatgatgagaatcctctaaatcgcgttttttat
aagaacatccaaaatctttgaagccttcggtTGTTCTTAAccattttaag
ttttaagtctaaaaatgttcttaacatgttcttatagTTTTGTTCTTATA
ACATAAAATGTATAGCTTTGGCGTCAGACCTGTTTATGAGAAAGCAGCAG
AAATCTTGGAACTTGATCAATATCATCATTACGTTGACGCTTATGCAacc
aaaaagttcatttttgatttttcttgaaaaatataatactgaatttgaat
tttctcAACTTGCTCTCAACATTTTGGCTACCGAAGCCTTATTTTCTCAC
ATAGTTTGTCCTTATATAAAATGTGATAGCGTGGATTTTTTATTCCTTCA
ATCGATAAACCTATAAACAATATAATGACAAATCAAAAATTACCAGAATt
ctacaaaaagaaattaaaaaaacccGTGCCAACCCATTGAACAGTtataa
ttgttttattatcaaaCTTGGAATCAACAACACGCTTTGGCTTGCTTTCA
AAgacttttcattttcgtttcgCTCTCTCGTTTACGTtggaattgacgtc
aaaaggcATGAAGCCAATTACGTTGAcgacttttttgtttacaagttTCT
TCGAAATTAGCattcaattatcattagaaatgtttttcaaataagAATAG
AAAAAAGTCGTTAAAATGGTAATTCATGGTTAATTTTTAACGGTAGCATA
CCTATTTATCCTTCGCACGCGTAACgtcatcccagctggcacaaaacgtt
gtttcaacgttcatttaacgttaaatggacattgtgaacgttagataaac
gttgaaacaacgttgtgtgccagttggaATGCGATACATTTACTTTTAAC
CAATTAGATTTAATTTTTGGAGGGAAACACAAGCACCATGGTCTAACTTT
CTAAAAAATCTTGTTTGCCAAAATTGCACATAGTCTTTTTAATGACCTAG
CCCAAAGTGCAATGCTTTCACGAAGTTCTTTTAAAAGTTAAGTTGTGGTT
GTGGAGTATTTTCTGCTTTTTTCGTAGTACAGTTTTTAATTTtcgacaaa
tttttaaaatttaacattaatgattatttttcaagcttatttccaaaaat
atataattttctcAGAACTTTGCACAATTTAAAGGAAAATCGATAATTGA
ATCCTTGTTCAGTTCGACGATACAATCTTTAGGACATGTGGATtccaccc
agctggcacacaacgctttttcgacgtttatctaacgttcacaacgttca
tataacgttagacaaaggttgaaacaacgttgtgtgccagctggaacCAA
ATTGCTCACAATCGGAAAGAAGGAAATTTTGGTGGAAATCTAAAAAGTTT
AGAGCAAATAAATACgttaaaagttttgattttcttataaaaaacgatga
AAAGCAATTAAAACATTCTCTTGTGTTCCGTGCCAGACAGGAACAGGGCG
GGGCGTTCGAAACCACGAAGACGCCACATGGTCAATCAAAAAGAGTAATT
TGTTACTATTTTATGAGAGAgatttcattttctaaaaattttcttaaatg
ttCTTGTCTTCGgcatttttggtgtaatttcaTGAGGAATTGCATGTTTT
AGAGCTTTTGAATTCCATAAAACCGTTGGCTTGCGCTGAAGACTTATATT
CTTATATGGAAAAGAGACAATCGTTACACAACTTTGCTTCGACTAATGAT
AGCCTTTGTATGCTCCGCCCTACCTCGTAAAGATAGTTTCGAAGCTAAAC
TGGTCTCAACTTTTTGTTTACAGACTATTTCTATGGTgatgaaacaaaca
aaaaacttgaaaaaagtaTGTTTGGGAAAAGTCATTGAGCTTAGCCAAAG
GCCAAAGACGAATCTTTTAACCTCTTTCTCtctcaaaaaaaagtgaaagc
cTTGAAATTTGCGTTTTATTTTGGATGGCGGATTGACTTTCATTGATTTT
TGgccttaaattttttaattttctgccGGAATATGTAACTTTCAATCTTG
TTATCTGGTACTCgaagtagaaattttcttccgacacgctaaagctctga
aggtcgggaaaattataacatctggaacctttggaTTACGGAATTTCTCC
TGACCGCGTtcgtaaaatttagaaagaGTCTGGGGACGGTAAAAAGTTAC
TAGTGCCCCGAACTAAGAGTACacatgtaaaaaaaatttcccgtgCGATT
TCTACATAGTGCTCCGAactgaaaaatgtaaataaagtgtaaggacagct
agacacgactgtgatgcggtacatcaaacgatgactactataggtctccg
atgtgatattggcccgctccttcagagctttagcgtgggcggccgccaat
acaccatcggaatatcagataatcaATCTTGTATCTGGATGAGAACCACG
CGGGCCGCGCAACCAATGTAGAAAATAAAAGGTTCCAAATCCTACATAGC
AGTTTCGTCTTTAGCATTTCGCGATACCCTATTGGGAAAACTCGAATACT
TTTCAATTCATTAACTGTAAtataatacagggtgtcccgaaaaaaagtat
cgagctCGAACacgattctgagtagaaggttatcgcgtgtgtttaacaaa
atgtaagaaatatataccaacacaataattgtttttacaacaatcatttt
gattaaaaataattaactctctttacaattttcatgacgttaaagttatt
gagaattgttttttgtaaaacttattcataaaagatgtctcatgacaatt
aatatgacacagagagaaactttgataaacattgcaaatttagtgaaaca
cacacaagaactttctttctatacaccttttcgaccaatgaagtataagc
ccgaagggctagaagtcaatctccttggtaggatttgaagccaacaaatc
ctaccaaagttgcgcggccttgagcggctcccCGCGTTTTTACACAAagg
acagattgaaactaaaatttaccgcttaattttgaaaaaaNNNNNNNNNN
NNNNNNNNNNNNNgttgcgcggccttgagcggctcgcctggtttttacac
aaatgacagattgaaactaaaatttaccgctaaatttcgaaaaaaatatc
aatcgtaaacaatagaattgctagattcaatctgtcttgcctgagaaagg
ttagagattgaactctagcccttcgggctttaaactcaatgttttCGACC
GTAACCGCCAATTGCcgcacgggcatttttttgtccgctttatcccacta
aaactgtcccagtccttttttcgcacctatagacaatagaaaaatgtgtc
aaaaaaggattggaccGAGTTTAGTAGGATAAAAGTGGCGCGCACCTGAC
cgtgcgactacggtcgaaaaggtgtatagaagtggtacgactcaacactt
tttttcgggacaccctgaaCACATGAATTAAACAAACTAAAGACACCCCT
GAACTCCTCGaaaattaaaagtttcaaaagacACTCTCTTAGCCGCCTCA
ATTTATAAAACTCTCGACTTAGAGGGGATGAGGATTTAGCacaacatttg
ttttgaaattaatcaCAGTATAGGCAAACATCTTTCTACTAGACAATCTT
TACCGATCATGGAAATGTTCATGGAAACTCTTACATAGTATACCGATTgt
atttccaccattatggaaacatACGCTCGAATCTGTAGAAGCGATTCCTT
ACGTAAAtcgcaaaaaaatatatatatataaatgcACATGCAACAATATT
TCCATGTGTTTAATAGGGAAAATATTTACCGGTCACGGAAATGTAACTgt
cttacaaagattgtttctAAATACGGAAGCCATAATTGATTTCTCCACAT
GAAATTACATAGACAAACCACATTTACATAATCCATTCTAAAATCAACTT
TCTCTTTTCCCTTCTCAGGATCAGACAGCGGTAGAACCTCAACATCGTCA
CCTTCTGAGATTCAAATCCTGACACCCTTCCATTCAGGAATGTCCCCTCC
AACAATGTTGGTATCATCGTGCTGTGATAAAGACCATGGGGACATTGGTT
CCCTCTCACCTGCATCTAGCTGCCACCATGAGGTATCAAGCCCGTTCTTC
TCTCGGTCTAGCTCCAGTCAGGATGGATTAGGCCCGATCTCACCTGAATC
TAACCATCACAGAGATTTACCGAAATCCACCCTATCCGCACATAGCTACA
ACCATATGGTAGCAGGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAG
GAAGAAATGATACCATCCCCTTCCGGGCAACATCAACAAAAAAGCAGT Coding sequence (CDS) from alignment at scaffold_349:811467..816314+ >TCONS_00060805 ID=TCONS_00060805|Name=TCONS_00060805|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_349:811467..816314+ (Clytia hemisphaerica)
GGGTATTTCCCTTGGCAAGATGAGACGCTGATGGAAGGATGTTGCTTGAA
ATATGAAATGGAAGATGAGAGTGACCGCGCGACATTTGATGGAAAAGGAG
ATTCACATACAGGATCAGACAGCGGTAGAACCTCAACATCGTCACCTTCT
GAGATTCAAATCCTGACACCCTTCCATTCAGGAATGTCCCCTCCAACAAT
GTTGGTATCATCGTGCTGTGATAAAGACCATGGGGACATTGGTTCCCTCT
CACCTGCATCTAGCTGCCACCATGAGGTATCAAGCCCGTTCTTCTCTCGG
TCTAGCTCCAGTCAGGATGGATTAGGCCCGATCTCACCTGAATCTAACCA
TCACAGAGATTTACCGAAATCCACCCTATCCGCACATAGCTACAACCATA
TGGTAGCAGGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAGGAAGAA
ATGATACCATCCCCTTCCGGGCAACATCAACAAAAAAGCAGTGGGTATTT
CCCTTGGCAAGATGAGACGCTGATGGAAGGATGTTGCTTGAAATATGAAA
TGGAAGATGAGAGTGACCGCGCGACATTTGATGGAAAAGGAGATTCACAT
ACAGGATCAGACAGCGGTAGAACCTCAACATCGTCACCTTCTGAGATTCA
AATCCTGACACCCTTCCATTCAGGAATGTCCCCTCCAACAATGTTGGTAT
CATCGTGCTGTGATAAAGACCATGGGGACATTGGTTCCCTCTCACCTGCA
TCTAGCTGCCACCATGAGGTATCAAGCCCGTTCTTCTCTCGGTCTAGCTC
CAGTCAGGATGGATTAGGCCCGATCTCACCTGAATCTAACCATCACAGAG
ATTTACCGAAATCCACCCTATCCGCACATAGCTACAACCATATGGTAGCA
GGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAGGAAGAAATGATACC
ATCCCCTTCCGGGCAACATCAACAAAAAAGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060805-exon-scaffold_349-1491911889:811467..811580 | TCONS_00060805-exon-scaffold_349-1491911889:811467..811580 | Clytia hemisphaerica | exon |
| TCONS_00060805-exon-scaffold_349-1510915933:811467..811580 | TCONS_00060805-exon-scaffold_349-1510915933:811467..811580 | Clytia hemisphaerica | exon |
| TCONS_00060805-exon-scaffold_349-1575043694:811467..811580 | TCONS_00060805-exon-scaffold_349-1575043694:811467..811580 | Clytia hemisphaerica | exon |
| TCONS_00060805-exon-scaffold_349-1491911889:815935..816314 | TCONS_00060805-exon-scaffold_349-1491911889:815935..816314 | Clytia hemisphaerica | exon |
| TCONS_00060805-exon-scaffold_349-1510915933:815935..816314 | TCONS_00060805-exon-scaffold_349-1510915933:815935..816314 | Clytia hemisphaerica | exon |
| TCONS_00060805-exon-scaffold_349-1575043694:815935..816314 | TCONS_00060805-exon-scaffold_349-1575043694:815935..816314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_349 | supercontig | scaffold_349:811467..816314 + |
Blast
The following BLAST results are available for this feature:
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