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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060360 ID=TCONS_00060360|Name=TCONS_00060360|organism=Clytia hemisphaerica|type=transcript|length=253bp
TCGTTGCAAGAAAACTTGCAATTATTGCCCAGGTTGTACTGACAAGCCTG
GCTTTAATCCACGTGCTTGCCGATTTTACAAAAGCAATCATTTATGTAAA
AGAGGTTTCGCTTATTCAAACTGCCCGAAGACATGTGGCATATGCTagga
aATTCGACTCAGCCGTTCCTACTCACTTAACTGATGTCATTTATGGATCA
TTTGTAATTTTACGattgatcaaatcaaaaacacTCCAAACAGCATATTG
AGC Run BLAST on NCBI transcript from alignment at scaffold_341:130953..134040+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060360 ID=TCONS_00060360|Name=TCONS_00060360|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at scaffold_341:130953..134040+ (Clytia hemisphaerica)
TCGTTGCAAGAAAACTTGCAATTATTGCCCAGGTTGGTCATCGATTACCT
TTGCAGGGAGTTACACTTTTTCGTCATTCCGTTACTTTTTCCTAAATTCT
TTTACATATTgtctaaacaaaagaaaaaattgcacaaccaaaaatcctta
aaatttaaggacatttttgattttttttttttaattttttgctaaatttt
gtcGGACGTCAAACCAAATCTGTACGGTTGTGCTCCTGACAAtgcaacaa
aatggcgaaaacttctaaaaattttaacacCGAAATTTCAACAAATTATG
AACCCTGCACCCCAAATAAATGCTTTATAAATGAGATAATACGGAATAAA
GATGTCTTGCAGTGTAGGAAGtgtcaaagatttgttcatTATGCCTGTTC
TGAATTTTCAGCGTACCAAATACCCCtggcgatatcacttagtgcctAGC
GGGGGGAGGAGCTATCTATTTCTCTGTATTCGTTTTGTAAGTAGTATATG
TTTGTAAGTGTAATTGCAGTTTCCTAAATCATTAAGAAAAATACAGATTT
GCCTTCAGTCCAAAGCAAGGAGATTAGAATGTGCAAAATGCATCACATTC
ACGCCAATACTATATTAGAGAAGatcaaaacaagtaaacaagggatgaca
aACAACAAGGCAACAAATACTGAAGGTAAAGAGGAAGATCAAAACGAGCA
ATGCGTTTTCGCTAGACAGGATAGTCtggagaaaaaattgatgaactTGT
AAACAAAACTACTTTGTTGGTGGGTCAAAAGAACACAGACATATGCAAAC
ATCGCTAAAGATGAACTAAACAAAAAAAGACCGCGATATCGACCCAAAAC
AACAACAGCCATACAATAGCATTACTAAAAATGTGCTACAGAAACAAGAG
GTAACGATCAAGAACTTCATTAAagcagaaaaagaagaagaaagatgGTT
TCATTTAACAAAATGCAATATTGTACCTTGTACCTTATACCTTGGCGAGA
AAACAGAATTCCATAAGGAAGCCAGAAGGATATAAAGTTAGAGGAAGTCC
TCGGACAAAACTCTATCTCAAAAACATCTGTAACAAACCCGCTACTGTAA
AGACAATCGATTTAGAGGACTGGGCACTTACAActgtaaaatatttataa
taataACTAGTCATAACTGGTACTAATGCCACCTGCAAATTGCAACATAT
TATATGGTGATTTATGATGAATTTGTTTAAGTTAAATATTAGGCTTGTGC
ATACTGCACTAAcctaaaacaatttaaaagttTCCTAAACAATCCAAAGA
AAACATGTCcgctaaaaattaaaattttcgatTAATTTGAGAGACGAACC
AAGCTGGCCTGCAATAAAAAGACTTTGCAAGAACTATTTTGTTGATAAAA
CGCCAGCAGcctggttttgtttttttgaatgtTGCTGTTTaaggaacttt
tggattgttttaGCGTTTTAGGTACCTAAATTACGCTGAGTCAGGGAAAT
TatacaatctgtctcctgtctgAGACATTCAGATTAACATGATTGTCTGA
TATTGATTGTTCAAGGACTTGTTCTTCCAAGGGTTCGTTTTCACGTTCGA
TGGCACTTATATATACTCACTTTTCGCTAGAAGCAAAAGAGAAACTTCTT
CCAAGGTAAAAAGGGTAAAAAGGGTAAAAAGACAAAAGCTACTGTTAAGC
TATAAGCGCTACGACCTCCGGATAACAAACATCACGGAATACTAATTTGA
CATCGGACATCAAATTACGACGCGCAAACAAAAGAACAAACGCAAACGGA
AAACATCGGGATTACCGTCAAATATCTGTGTATGAAGCTCTGAGTATCTT
CCAACTCGCTGTACTCGTTTCAGTGGTAACAATTAAACAACCCAATCTTC
TGTACCGACAAAGGACAACTTTCAGAATTTcatccattttttttttgaaa
ccaccTCCTTCTAGACGACTTAGTATTTGACTCCTCCGTTCTGTTTTATA
TTTTGAGTGTAATATNTACGACCTCCGGATAACAAACATCACGGAATACT
AATTTGACATCGGACATCAAATTACGACGCGCAAACAAAAGAACAAACGC
AAACGGAAAACATCGGGATTACCGTCAAATATCTGTGTATGAAGCTCTGA
GTATCTTCCAACTCGCTGTACTCGTTTCAGTGGTAACAATTAAACAACCC
AATCTTCTGTACCGACAAAGGACAACTTTCAGAATTTcatccattttttt
tttgaaaccaccTCCTTCTAGACGACTTAGTATTTGACTCCTCCGTTCTG
TTTTATATTTTCAGTGTAATATTGTTATTAAACTGTAATCTTCCTACCAT
AGGTTGTACTGACAAGCCTGGCTTTAATCCACGTGCTTGCCGATTTTACA
AAAGCAATCATTTATGTAAAAGAGGTTTCGCTTATTCAAACTGCCCGAAG
ACATGTGGCATATGCTGTGAGttgtttcttttttgaatttctgacACCCA
GAAATCAAGTAtgattttgaatctttttcgtTGAGCTAATTTCCCAACCG
CACCTAAGGAGACAGTAATTTTTAGGGGgtggtcataaagtatctacagG
GCGGGGTTGGAGCTGGATATCCTTCAAGCTAAATCTCTTTGAATTGAGAT
TTTTGCACCATACATGCAATGGCAAAAAAAGATTATCATTGGTAAGGCTC
TGATAAATTGTTCAAAAGACCCTCCTCCCCTTTCTAGAAAGTTTATGACC
AGTCCCTTAAATGAAAAACCTTTGTTTACAAATTACCTTTCATGAACGAA
ACTCCATCTTATGTTCTGTTCAAAAGATTTTGTCGTATTAAGACCCGATA
AGAACACCTGACCTGAACCATTgaaaaagtcggcaaaaataaaaataccc
tGAATTTCCACCCCATTGATAACACTTACCCCTTATTTGATTATGTAtaa
tttttacttgaaattcgtttttttttttcagaggaaATTCGACTCAGCCG
TTCCTACTCACTTAACTGATGTCATTTATGGATCATTTGTAATTTTACGa
ttgatcaaatcaaaaacacTCCAAACAGCATATTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060360-exon-scaffold_341-1491911889:130953..130984 | TCONS_00060360-exon-scaffold_341-1491911889:130953..130984 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1510915933:130953..130984 | TCONS_00060360-exon-scaffold_341-1510915933:130953..130984 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1575043694:130953..130984 | TCONS_00060360-exon-scaffold_341-1575043694:130953..130984 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1491911889:133305..133418 | TCONS_00060360-exon-scaffold_341-1491911889:133305..133418 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1510915933:133305..133418 | TCONS_00060360-exon-scaffold_341-1510915933:133305..133418 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1575043694:133305..133418 | TCONS_00060360-exon-scaffold_341-1575043694:133305..133418 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1491911889:133934..134040 | TCONS_00060360-exon-scaffold_341-1491911889:133934..134040 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1510915933:133934..134040 | TCONS_00060360-exon-scaffold_341-1510915933:133934..134040 | Clytia hemisphaerica | exon |
| TCONS_00060360-exon-scaffold_341-1575043694:133934..134040 | TCONS_00060360-exon-scaffold_341-1575043694:133934..134040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_341 | supercontig | scaffold_341:130953..134040 + |
Blast
The following BLAST results are available for this feature:
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