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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060359 ID=TCONS_00060359|Name=TCONS_00060359|organism=Clytia hemisphaerica|type=transcript|length=1422bp
CGTTGTTGAGCCAACGGGTCCATAGCTGGGTTCATCGGTGTCGCGAAATT
AGAATGGCCATTCATGGAGCCACGTTTTTCCATTGATGAATGATCTATAG
GCTGGTTCATTGGAGTCGCGAAATTTGTTGGGCCACCATTCATCGAGTTT
CGTTTCTCCATATGTTGTGCTGAGTTCCCTTGTGGATTATAAATATTACT
TTCATCCTCCTCTTGTTCGAAAGTGACCCAATCCTGTTGATTATTCTTCA
CCGGAATGCCAACAATCTCCGAAGCTGTTGAAGACAACCGCCCTTTAAAA
CTTCTCGATTTCTTCAAATCCTTTTCGATCGATTTGAAATTGTGATACGA
TCGTCTTATATTCTCATATTCAGGATCTTCTTTGAGTGTACCGACAgcaa
ctttcactttcacttttaggTTCTGGGGAATCATAAACACAACCTGTGAT
TGTCCTTGACCACAGCTGGCAATGATTAAATGATCATCATAAGTTGATTT
AGCCTTAACCACGCCCAATTTGCTGCTGGAAGCACCcacaaattgaaaat
gaaagggATACTTATACCCATTAGAATCAGATGGAATCACATCGGATAAC
ATTTTCGGTGCATTATCAACCAATGGTTTGAAGCCAGCAACACAATCAAA
AGGTATTTTTAAAACAACACCTTCAGAATTTCTGAACGTCATACTCCGCG
TCTTCTTTGTGAAAATATTTGATTCGTTGACTTCGATAACTTCTAGGACC
TCACCAGGATCGACGGAAAGCTCATAATCAACTTCTGAATCGATATCATA
ATACCCTCTGGTCACCTCCACATATTTGGGTAATGGTTTAGCATGTGATA
AATCTTGCACTTTCTGATAAACGGTATCATAATTTTCCggttttaaattg
attttctgCGTGTGAACAGGGATGTGAAGTTCCTTACCGTGACGATCCTG
ACACTGTAGTTTCCTTTCAGTTGTTAGGGTATGGATCTTCAACACTTGAC
CACTACTGAGTGAANCTGTAGTTTCCTTTCGGTTGTTAGGGTATGGATCT
TCAACACTTGACCACTACTGAGTGAATTTTCATCAGAACCACCATGATAG
CCTTCTTCAACTTGGACAATTTGTGGTAAAGGATATGTAGTCACGAAATC
ACATAATGCTATTGATGTTTCACTCCATTGTATGTTTTGAAGATTCTCTG
AagacaaattttgattttcaacatcTAGTTTCGacatttttaaggttttt
caatTCTGTCAAGAAAAATAGTATGTAGCAGTTAAAATGTAAGAGGAGGT
TTATCTAAAagatcctgcattactaaaaatagacaaaaaaaaacgacaaa
tttcataaggaacgacaaatttcgccgtccacaaacCCAACTGACTGTAC
CACCCATATGGAtgcattcctc Run BLAST on NCBI protein sequence of TCONS_00060359-protein >TCONS_00060359-protein ID=TCONS_00060359-protein|Name=TCONS_00060359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MTFRNSEGVVLKIPFDCVAGFKPLVDNAPKMLSDVIPSDSNGYKYPFHFQ
FVGASSSKLGVVKAKSTYDDHLIIASCGQGQSQVVFMIPQNLKVKVKVAV
GTLKEDPEYENIRRSYHNFKSIEKDLKKSRSFKGRLSSTASEIVGIPVKN
NQQDWVTFEQEEDESNIYNPQGNSAQHMEKRNSMNGGPTNFATPMNQPID
HSSMEKRGSMNGHSNFATPMNPAMDPLAQQ Run BLAST on NCBI transcript from alignment at scaffold_340:354387..355808 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060359 ID=TCONS_00060359|Name=TCONS_00060359|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at scaffold_340:354387..355808 (Clytia hemisphaerica)
gaggaatgcaTCCATATGGGTGGTACAGTCAGTTGGgtttgtggacggcg
aaatttgtcgttccttatgaaatttgtcgtttttttttgtctatttttag
taatgcaggatctTTTAGATAAACCTCCTCTTACATTTTAACTGCTACAT
ACTATTTTTCTTGACAGAattgaaaaaccttaaaaatgtCGAAACTAgat
gttgaaaatcaaaatttgtctTCAGAGAATCTTCAAAACATACAATGGAG
TGAAACATCAATAGCATTATGTGATTTCGTGACTACATATCCTTTACCAC
AAATTGTCCAAGTTGAAGAAGGCTATCATGGTGGTTCTGATGAAAATTCA
CTCAGTAGTGGTCAAGTGTTGAAGATCCATACCCTAACAACCGAAAGGAA
ACTACAGNTTCACTCAGTAGTGGTCAAGTGTTGAAGATCCATACCCTAAC
AACTGAAAGGAAACTACAGTGTCAGGATCGTCACGGTAAGGAACTTCACA
TCCCTGTTCACACGcagaaaatcaatttaaaaccGGAAAATTATGATACC
GTTTATCAGAAAGTGCAAGATTTATCACATGCTAAACCATTACCCAAATA
TGTGGAGGTGACCAGAGGGTATTATGATATCGATTCAGAAGTTGATTATG
AGCTTTCCGTCGATCCTGGTGAGGTCCTAGAAGTTATCGAAGTCAACGAA
TCAAATATTTTCACAAAGAAGACGCGGAGTATGACGTTCAGAAATTCTGA
AGGTGTTGTTTTAAAAATACCTTTTGATTGTGTTGCTGGCTTCAAACCAT
TGGTTGATAATGCACCGAAAATGTTATCCGATGTGATTCCATCTGATTCT
AATGGGTATAAGTATccctttcattttcaatttgtgGGTGCTTCCAGCAG
CAAATTGGGCGTGGTTAAGGCTAAATCAACTTATGATGATCATTTAATCA
TTGCCAGCTGTGGTCAAGGACAATCACAGGTTGTGTTTATGATTCCCCAG
AAcctaaaagtgaaagtgaaagttgcTGTCGGTACACTCAAAGAAGATCC
TGAATATGAGAATATAAGACGATCGTATCACAATTTCAAATCGATCGAAA
AGGATTTGAAGAAATCGAGAAGTTTTAAAGGGCGGTTGTCTTCAACAGCT
TCGGAGATTGTTGGCATTCCGGTGAAGAATAATCAACAGGATTGGGTCAC
TTTCGAACAAGAGGAGGATGAAAGTAATATTTATAATCCACAAGGGAACT
CAGCACAACATATGGAGAAACGAAACTCGATGAATGGTGGCCCAACAAAT
TTCGCGACTCCAATGAACCAGCCTATAGATCATTCATCAATGGAAAAACG
TGGCTCCATGAATGGCCATTCTAATTTCGCGACACCGATGAACCCAGCTA
TGGACCCGTTGGCTCAACAACG Coding sequence (CDS) from alignment at scaffold_340:354387..355808 >TCONS_00060359 ID=TCONS_00060359|Name=TCONS_00060359|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_340:354387..355808 (Clytia hemisphaerica)
ATGACGTTCAGAAATTCTGAAGGTGTTGTTTTAAAAATACCTTTTGATTG
TGTTGCTGGCTTCAAACCATTGGTTGATAATGCACCGAAAATGTTATCCG
ATGTGATTCCATCTGATTCTAATGGGTATAAGTATccctttcattttcaa
tttgtgGGTGCTTCCAGCAGCAAATTGGGCGTGGTTAAGGCTAAATCAAC
TTATGATGATCATTTAATCATTGCCAGCTGTGGTCAAGGACAATCACAGG
TTGTGTTTATGATTCCCCAGAAcctaaaagtgaaagtgaaagttgcTGTC
GGTACACTCAAAGAAGATCCTGAATATGAGAATATAAGACGATCGTATCA
CAATTTCAAATCGATCGAAAAGGATTTGAAGAAATCGAGAAGTTTTAAAG
GGCGGTTGTCTTCAACAGCTTCGGAGATTGTTGGCATTCCGGTGAAGAAT
AATCAACAGGATTGGGTCACTTTCGAACAAGAGGAGGATGAAAGTAATAT
TTATAATCCACAAGGGAACTCAGCACAACATATGGAGAAACGAAACTCGA
TGAATGGTGGCCCAACAAATTTCGCGACTCCAATGAACCAGCCTATAGAT
CATTCATCAATGGAAAAACGTGGCTCCATGAATGGCCATTCTAATTTCGC
GACACCGATGAACCCAGCTATGGACCCGTTGGCTCAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060359-exon-scaffold_340-1491911889:354387..355808 | TCONS_00060359-exon-scaffold_340-1491911889:354387..355808 | Clytia hemisphaerica | exon |
| TCONS_00060359-exon-scaffold_340-1510915933:354387..355808 | TCONS_00060359-exon-scaffold_340-1510915933:354387..355808 | Clytia hemisphaerica | exon |
| TCONS_00060359-exon-scaffold_340-1575043694:354387..355808 | TCONS_00060359-exon-scaffold_340-1575043694:354387..355808 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:354387..355808 . |
Blast
The following BLAST results are available for this feature:
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