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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060357 ID=TCONS_00060357|Name=TCONS_00060357|organism=Clytia hemisphaerica|type=transcript|length=1008bp
CTGCAAGTGCTCATTGATGTGTTGAAAGCTTTCTGGTTATTATTTAATTG
AGCTCCTTGGAAAGGTGAAATTAAGTGGGCCCTAATAGGATAAGCAGGAT
CACCATAGATACAAAGGGGGTTGCCTGCAGCatcatttgaaaaattctgt
AGATCTTGTAAAAGTCCAGAGGCGTTTAATAGGGCACAGTCATGTCTTCT
TCCTTCCATGGGACCATAAAGGTTAGCTATCAGTCCATTAGGAGCCACTA
CACTTTGAAATTTGAGAGCATGAACTCTTTTATGTCCATTGTAAACGATT
CTTTGATGCTCTCCTGGTCTACAGATGGGACGAACTGTTCCATCCACAAA
GCCCCAGCAATTTTCAAGGGCTGCTCCTTTTGCATGGATAGCATCTGCAT
ACTCTTGAAGCTTGACTGGACTTAGCCAGGGTTGATTTATTGGGTTAAGG
TCGGTTAGTTTGTTACCAAACTGGCTGTAAACATGCTCAACAATGTAATT
TGTTATCATGCAAATTTCAGGTACAGGTCTACCAAAACGTGGGATCATAT
CACCATATCTGCATGGGTAGGCAAATCTTCTCAGGAACATGCAAAATGCT
TCTAATCCTGGACAAATTGTTCTGTTTTTACATCTAACAGTGTCTGGAAT
GTTCAATACATTTCTCAATAAGATAACATCATTTCTGTACATTCTGAATT
CAGCCCAGCATTCTGCTTCAGACACAACCAACAAATCGAAAGGGTTGTAA
ATCCAAAATGGAAAGTCAGGATTTTTGCTTGTATAAAGGTCAAATAGAAT
CAGGAATTCTTCGTCAGAAATAAGATTCTGACTGTAAGCTAAGAGCAACA
ACTCTCTTGTTTCGCGAAAAGACGCCatatttgttatgatttttggcGCG
CGTTACAGATTAATTTGCTTAATGAATTTTGCTCTAAATGCGTCGACGTC
GACGTCAACATCAAATTTACCCGTCCTAGAACGCTCCGTCCTCTTTGCTT
AAGCTCGC Run BLAST on NCBI protein sequence of TCONS_00060357-protein >TCONS_00060357-protein ID=TCONS_00060357-protein|Name=TCONS_00060357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MASFRETRELLLLAYSQNLISDEEFLILFDLYTSKNPDFPFWIYNPFDLL
VVSEAECWAEFRMYRNDVILLRNVLNIPDTVRCKNRTICPGLEAFCMFLR
RFAYPCRYGDMIPRFGRPVPEICMITNYIVEHVYSQFGNKLTDLNPINQP
WLSPVKLQEYADAIHAKGAALENCWGFVDGTVRPICRPGEHQRIVYNGHK
RVHALKFQSVVAPNGLIANLYGPMEGRRHDCALLNASGLLQDLQNFSNDA
AGNPLCIYGDPAYPIRAHLISPFQGAQLNNNQKAFNTSMSTC Run BLAST on NCBI transcript from alignment at scaffold_340:339140..340147 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060357 ID=TCONS_00060357|Name=TCONS_00060357|organism=Clytia hemisphaerica|type=transcript|length=1008bp|location=Sequence derived from alignment at scaffold_340:339140..340147 (Clytia hemisphaerica)
GCGAGCTTAAGCAAAGAGGACGGAGCGTTCTAGGACGGGTAAATTTGATG
TTGACGTCGACGTCGACGCATTTAGAGCAAAATTCATTAAGCAAATTAAT
CTGTAACGCGCgccaaaaatcataacaaatatGGCGTCTTTTCGCGAAAC
AAGAGAGTTGTTGCTCTTAGCTTACAGTCAGAATCTTATTTCTGACGAAG
AATTCCTGATTCTATTTGACCTTTATACAAGCAAAAATCCTGACTTTCCA
TTTTGGATTTACAACCCTTTCGATTTGTTGGTTGTGTCTGAAGCAGAATG
CTGGGCTGAATTCAGAATGTACAGAAATGATGTTATCTTATTGAGAAATG
TATTGAACATTCCAGACACTGTTAGATGTAAAAACAGAACAATTTGTCCA
GGATTAGAAGCATTTTGCATGTTCCTGAGAAGATTTGCCTACCCATGCAG
ATATGGTGATATGATCCCACGTTTTGGTAGACCTGTACCTGAAATTTGCA
TGATAACAAATTACATTGTTGAGCATGTTTACAGCCAGTTTGGTAACAAA
CTAACCGACCTTAACCCAATAAATCAACCCTGGCTAAGTCCAGTCAAGCT
TCAAGAGTATGCAGATGCTATCCATGCAAAAGGAGCAGCCCTTGAAAATT
GCTGGGGCTTTGTGGATGGAACAGTTCGTCCCATCTGTAGACCAGGAGAG
CATCAAAGAATCGTTTACAATGGACATAAAAGAGTTCATGCTCTCAAATT
TCAAAGTGTAGTGGCTCCTAATGGACTGATAGCTAACCTTTATGGTCCCA
TGGAAGGAAGAAGACATGACTGTGCCCTATTAAACGCCTCTGGACTTTTA
CAAGATCTacagaatttttcaaatgatGCTGCAGGCAACCCCCTTTGTAT
CTATGGTGATCCTGCTTATCCTATTAGGGCCCACTTAATTTCACCTTTCC
AAGGAGCTCAATTAAATAATAACCAGAAAGCTTTCAACACATCAATGAGC
ACTTGCAG Coding sequence (CDS) from alignment at scaffold_340:339140..340147 >TCONS_00060357 ID=TCONS_00060357|Name=TCONS_00060357|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_340:339140..340147 (Clytia hemisphaerica)
atGGCGTCTTTTCGCGAAACAAGAGAGTTGTTGCTCTTAGCTTACAGTCA
GAATCTTATTTCTGACGAAGAATTCCTGATTCTATTTGACCTTTATACAA
GCAAAAATCCTGACTTTCCATTTTGGATTTACAACCCTTTCGATTTGTTG
GTTGTGTCTGAAGCAGAATGCTGGGCTGAATTCAGAATGTACAGAAATGA
TGTTATCTTATTGAGAAATGTATTGAACATTCCAGACACTGTTAGATGTA
AAAACAGAACAATTTGTCCAGGATTAGAAGCATTTTGCATGTTCCTGAGA
AGATTTGCCTACCCATGCAGATATGGTGATATGATCCCACGTTTTGGTAG
ACCTGTACCTGAAATTTGCATGATAACAAATTACATTGTTGAGCATGTTT
ACAGCCAGTTTGGTAACAAACTAACCGACCTTAACCCAATAAATCAACCC
TGGCTAAGTCCAGTCAAGCTTCAAGAGTATGCAGATGCTATCCATGCAAA
AGGAGCAGCCCTTGAAAATTGCTGGGGCTTTGTGGATGGAACAGTTCGTC
CCATCTGTAGACCAGGAGAGCATCAAAGAATCGTTTACAATGGACATAAA
AGAGTTCATGCTCTCAAATTTCAAAGTGTAGTGGCTCCTAATGGACTGAT
AGCTAACCTTTATGGTCCCATGGAAGGAAGAAGACATGACTGTGCCCTAT
TAAACGCCTCTGGACTTTTACAAGATCTacagaatttttcaaatgatGCT
GCAGGCAACCCCCTTTGTATCTATGGTGATCCTGCTTATCCTATTAGGGC
CCACTTAATTTCACCTTTCCAAGGAGCTCAATTAAATAATAACCAGAAAG
CTTTCAACACATCAATGAGCACTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060357-exon-scaffold_340-1491911889:339140..340147 | TCONS_00060357-exon-scaffold_340-1491911889:339140..340147 | Clytia hemisphaerica | exon |
| TCONS_00060357-exon-scaffold_340-1510915933:339140..340147 | TCONS_00060357-exon-scaffold_340-1510915933:339140..340147 | Clytia hemisphaerica | exon |
| TCONS_00060357-exon-scaffold_340-1575043694:339140..340147 | TCONS_00060357-exon-scaffold_340-1575043694:339140..340147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:339140..340147 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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