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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060215 ID=TCONS_00060215|Name=TCONS_00060215|organism=Clytia hemisphaerica|type=transcript|length=1183bp
gataaatttgtctttgtaaaagttttatagagagctaagtaattgtttca
aaaactcacaaaaagatgggataaaagtctttcaatttattcagataaac
taccaacctaaagcctaatgtaatatctttgttgttggtcattcagccat
tgcacaagaaacatATGTGTGTTCTTTATTGTCACTTGcgctatttttta
taagaaccagtaaattttcttaaaggtttggctgtccttttttgcacttt
gagcctgaaattgttttgaattgctcaaaacccagcgtatttaatttttg
agcctcgtattgttcttataaaaaagaaagagttgagttggaaaacatta
tcaataaaagtttgacttataaaaataatttgttagtgtcgaaatttctt
cgctttgcgaaaacggaacggtcgttccgcaaccccttttatgttgattc
gTCATGTTCTTCATCAATGTGTAAGTTGTCGTAAGTTACGTGGGAAGTCT
CAATCACCAAAGATGGCTGATCTACCCGAAGATCGGTTACAAGATGCACC
ACCATTCACCTACGTCGAACTAGACCTTTTTGGTCCTTTCCTCGTCAAAG
AGCGACGAAGCGAGCTCAAATGTTATGGTATTATCTACACGTGCCTAAAT
TCACGAGCTTGCCATCCAGAGAGTGTTAATTCTATGGACACTGATTCTTT
CATCATGTGTCTACGACGTTTCATTGCAAGAAGAGAACCAGTACAACGGG
TAAGATGTGACAACGGTTCAAATTTTGTTGGAGCTCGAACCGAATTCGTC
AAAGCGATCAAGCAATCAAGATTTATCTGATGGAACAAAATGCAGACTTT
GTTTCCTGGAAGTTCAATCCACCATACGCAAGCAACTTTGGAGGCGTATG
GGAAAGACTAATACGCTCTACACGTGCAATCTTAGATTCATTATTGACCA
CTCATGGTCATTCGTTAAATGATGAATCCTTTCGAACATTATTAGTTGAA
ATAGAGGTTCAAGACCATTAACTGTTGAATGCCTCAGTGATGTAGAGAGT
CCAACACCTTTAACACCAAATCATCTATTGACAATGAAATCTACCATCAC
CAATACGTTTCGAGAAAGTAGACCTGTATTCAAGAAGGCGATGGAGGCGA
GTTCAACATATTTGTAACGAGTTTTGGTCACGG Run BLAST on NCBI protein sequence of TCONS_00060215-protein >TCONS_00060215-protein ID=TCONS_00060215-protein|Name=TCONS_00060215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MLIRHVLHQCVSCRKLRGKSQSPKMADLPEDRLQDAPPFTYVELDLFGPF
LVKERRSELKCYGIIYTCLNSRACHPESVNSMDTDSFIMCLRRFIARREP
VQRVRCDNGSNFVGARTEFVKAIKQSRFI Run BLAST on NCBI transcript from alignment at scaffold_337:45493..46675 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060215 ID=TCONS_00060215|Name=TCONS_00060215|organism=Clytia hemisphaerica|type=transcript|length=1183bp|location=Sequence derived from alignment at scaffold_337:45493..46675 (Clytia hemisphaerica)
CCGTGACCAAAACTCGTTACAAATATGTTGAACTCGCCTCCATCGCCTTC
TTGAATACAGGTCTACTTTCTCGAAACGTATTGGTGATGGTAGATTTCAT
TGTCAATAGATGATTTGGTGTTAAAGGTGTTGGACTCTCTACATCACTGA
GGCATTCAACAGTTAATGGTCTTGAACCTCTATTTCAACTAATAATGTTC
GAAAGGATTCATCATTTAACGAATGACCATGAGTGGTCAATAATGAATCT
AAGATTGCACGTGTAGAGCGTATTAGTCTTTCCCATACGCCTCCAAAGTT
GCTTGCGTATGGTGGATTGAACTTCCAGGAAACAAAGTCTGCATTTTGTT
CCATCAGATAAATCTTGATTGCTTGATCGCTTTGACGAATTCGGTTCGAG
CTCCAACAAAATTTGAACCGTTGTCACATCTTACCCGTTGTACTGGTTCT
CTTCTTGCAATGAAACGTCGTAGACACATGATGAAAGAATCAGTGTCCAT
AGAATTAACACTCTCTGGATGGCAAGCTCGTGAATTTAGGCACGTGTAGA
TAATACCATAACATTTGAGCTCGCTTCGTCGCTCTTTGACGAGGAAAGGA
CCAAAAAGGTCTAGTTCGACGTAGGTGAATGGTGGTGCATCTTGTAACCG
ATCTTCGGGTAGATCAGCCATCTTTGGTGATTGAGACTTCCCACGTAACT
TACGACAACTTACACATTGATGAAGAACATGAcgaatcaacataaaaggg
gttgcggaacgaccgttccgttttcgcaaagcgaagaaatttcgacacta
acaaattatttttataagtcaaacttttattgataatgttttccaactca
actctttcttttttataagaacaatacgaggctcaaaaattaaatacgct
gggttttgagcaattcaaaacaatttcaggctcaaagtgcaaaaaaggac
agccaaacctttaagaaaatttactggttcttataaaaaatagcgCAAGT
GACAATAAAGAACACACATatgtttcttgtgcaatggctgaatgaccaac
aacaaagatattacattaggctttaggttggtagtttatctgaataaatt
gaaagacttttatcccatctttttgtgagtttttgaaacaattacttagc
tctctataaaacttttacaaagacaaatttatc Coding sequence (CDS) from alignment at scaffold_337:45493..46675 >TCONS_00060215 ID=TCONS_00060215|Name=TCONS_00060215|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_337:45493..46675 (Clytia hemisphaerica)
TCAGATAAATCTTGATTGCTTGATCGCTTTGACGAATTCGGTTCGAGCTC
CAACAAAATTTGAACCGTTGTCACATCTTACCCGTTGTACTGGTTCTCTT
CTTGCAATGAAACGTCGTAGACACATGATGAAAGAATCAGTGTCCATAGA
ATTAACACTCTCTGGATGGCAAGCTCGTGAATTTAGGCACGTGTAGATAA
TACCATAACATTTGAGCTCGCTTCGTCGCTCTTTGACGAGGAAAGGACCA
AAAAGGTCTAGTTCGACGTAGGTGAATGGTGGTGCATCTTGTAACCGATC
TTCGGGTAGATCAGCCATCTTTGGTGATTGAGACTTCCCACGTAACTTAC
GACAACTTACACATTGATGAAGAACATGAcgaatcaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060215-exon-scaffold_337-1491911889:45493..46675 | TCONS_00060215-exon-scaffold_337-1491911889:45493..46675 | Clytia hemisphaerica | exon |
| TCONS_00060215-exon-scaffold_337-1510915933:45493..46675 | TCONS_00060215-exon-scaffold_337-1510915933:45493..46675 | Clytia hemisphaerica | exon |
| TCONS_00060215-exon-scaffold_337-1575043694:45493..46675 | TCONS_00060215-exon-scaffold_337-1575043694:45493..46675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_337 | supercontig | scaffold_337:45493..46675 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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