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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060195 ID=TCONS_00060195|Name=TCONS_00060195|organism=Clytia hemisphaerica|type=transcript|length=2023bp
aacgaataataaacctctttaaatactctgcaaaagaccagaaaacataa
taaaaatgtatacaacagcagcaagtttcaaaagcatgtgcaatcaagca
gccattaaaaagttctcatgatgaagatgaatgtttacaaagacTTGGTT
ACACATCTTGCACTAGAGTATTTTGATTATcaagaaaagcgctgtttttt
atctttgtgagtgagtccacctttagaatattggccgtagtacgcccgca
gccaaacgcccacgccataatttgcgcccaaaaaattttctcgccaCGCA
CGCACACAGAaagactatcgtaatactttcgctatgcgaaattaataaac
aaaacaaaaaaaacaaaaaaacatgcCCACCAAAAGAGCTGATATCAGCC
AAAGTCAACGAAGGCACCGCCAAGGTAGTAAGGGATACTCTCTTTTACTT
CCTTGGTTTGACTATAATCGCCATTACGAAGGTCAAGAAAGGCACGACCA
TTATAAACGCCACTCGAACTTACAATACTTGCAATACAAATATACAAATA
ACGAACCCCTTGCTTACGATACAAGTTTTTTGCTAATCACTCGGCTTATT
GTAGATGGAGATGTAGAATTAAATCCAGGGCCAATTAACAATGCAATTAA
ATCTCCAAGAGGAAGaccaaaaaagaaaacgtgttttCGAGGAACCCCAA
ATAACATACATAATAATACTGTAAATTTCATCAGAGAAAACAAACCATTA
GGATTGAAAAATCTAGGACAAAATGTATGTTTCTTCAATTCAGTGATTCA
ATCATTATACACTATTGATACCTTCCGTGAATTTGTTAAAACTCTTGATA
CCAATGACTCCAGTATTTTAGCAATCAAAGACTTATTTTCTACAATAGAA
AGCTCCGAATCACCCATAGAAACGTACGAATTCATAAAGTGTATAGAACT
TCCAGGCTACGATTATACACAACGAGAACAATTTGATGCTCAAGAGTGTG
TAAATTCTATTTTGAACCATGTGTATCAagttcattttaatgaaattccT
GAAGAAAGTTCATTTCGAGTGTCATTTTTGGAATCAGTCTTATGTCAAAG
ATGCAATAATCCTTCTGAACGGACAGAATACTATAATATGTGTCGGATTC
Aatttcctagtccttttagtcctgataattcgatgaaaaatttgattgag
AAATTAACTAATGATCCTTACGGTGAACTTATTGAAGACTACGTATGCTC
AAATTGCCCAATAACAACAAATGCCACAAAAAGTAGAACCCTATTTAATG
TTTCTCATGCCTTGATCATTCAACTTGTATTTTTTTGCTATGATCAAACC
ACCGGACGCTTGAAGAAATTAGTTCCAAATTTAAATATTGAAACAGAAAT
AGAAAACGTTCTTCTCGGGACACTTGAATTACAAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAATAGAAAAC
GTTCTTCTCGGGACACTTGAATTACAAGCAATTGTTTATCATCACGGTGA
TACACCTGATAGTGGTCATTATACATCTGTTGTAAAATATAATGAACAAT
GGTATTCAGTAAATGATGATCATGTTACCGTTATTAAAGGTGATGAGTTT
AACTGCAAAATTAGTGATAAAATAGTTCCATACATATTGATTTACAAGAA
ATGCAATCGAGAAATCGATTCTTTGCCTCTGAACTCCGATTATAAAATTC
GTGACCAAACCTCTAGTGAAGATAGCATTTTCATTGAAAGTTCAGAAATT
CCCAATACTTTCAAAATTGAATCAAAGTTAGTTGAAANTTCCATACGTAT
TGATTTACAAGAAATGCAATCAAGAAATTGATTCTTTGCCTCTGAACTCC
GATAATAACATTAGTGACCAAACCTCTAGTGAAGATCGAATTTTCATTGA
AAGCTCAGAAATTCCCAATACTTTCAAAATTGAATCAAAGTTAGTTGCAA
CCGACAAAGATAAACCTAAAGAA Run BLAST on NCBI protein sequence of TCONS_00060195-protein >TCONS_00060195-protein ID=TCONS_00060195-protein|Name=TCONS_00060195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MPTKRADISQSQRRHRQGSKGYSLLLPWFDYNRHYEGQERHDHYKRHSNL
QYLQYKYTNNEPLAYDTSFLLITRLIVDGDVELNPGPINNAIKSPRGRPK
KKTCFRGTPNNIHNNTVNFIRENKPLGLKNLGQNVCFFNSVIQSLYTIDT
FREFVKTLDTNDSSILAIKDLFSTIESSESPIETYEFIKCIELPGYDYTQ
REQFDAQECVNSILNHVYQVHFNEIPEESSFRVSFLESVLCQRCNNPSER
TEYYNMCRIQFPSPFSPDNSMKNLIEKLTNDPYGELIEDYVCSNCPITTN
ATKSRTLFNVSHALIIQLVFFCYDQTTGRLKKLVPNLNIETEIENVLLGT
LELQXXXXXXXXXXXXXXXXXXEIENVLLGTLELQAIVYHHGDTPDSGHY
TSVVKYNEQWYSVNDDHVTVIKGDEFNCKISDKIVPYILIYKKCNREIDS
LPLNSDYKIRDQTSSEDSIFIESSEIPNTFKIESKLVEXSIRIDLQEMQS
RN Run BLAST on NCBI transcript from alignment at scaffold_336:127943..129965 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060195 ID=TCONS_00060195|Name=TCONS_00060195|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at scaffold_336:127943..129965 (Clytia hemisphaerica)
TTCTTTAGGTTTATCTTTGTCGGTTGCAACTAACTTTGATTCAATTTTGA
AAGTATTGGGAATTTCTGAGCTTTCAATGAAAATTCGATCTTCACTAGAG
GTTTGGTCACTAATGTTATTATCGGAGTTCAGAGGCAAAGAATCAATTTC
TTGATTGCATTTCTTGTAAATCAATACGTATGGAANTTTCAACTAACTTT
GATTCAATTTTGAAAGTATTGGGAATTTCTGAACTTTCAATGAAAATGCT
ATCTTCACTAGAGGTTTGGTCACGAATTTTATAATCGGAGTTCAGAGGCA
AAGAATCGATTTCTCGATTGCATTTCTTGTAAATCAATATGTATGGAACT
ATTTTATCACTAATTTTGCAGTTAAACTCATCACCTTTAATAACGGTAAC
ATGATCATCATTTACTGAATACCATTGTTCATTATATTTTACAACAGATG
TATAATGACCACTATCAGGTGTATCACCGTGATGATAAACAATTGCTTGT
AATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTAATTCAA
GTGTCCCGAGAAGAACGTTTTCTATTTCTGTTTCAATATTTAAATTTGGA
ACTAATTTCTTCAAGCGTCCGGTGGTTTGATCATAGCAAAAAAATACAAG
TTGAATGATCAAGGCATGAGAAACATTAAATAGGGTTCTACTTTTTGTGG
CATTTGTTGTTATTGGGCAATTTGAGCATACGTAGTCTTCAATAAGTTCA
CCGTAAGGATCATTAGTTAATTTctcaatcaaatttttcatcgaattatc
aggactaaaaggactaggaaatTGAATCCGACACATATTATAGTATTCTG
TCCGTTCAGAAGGATTATTGCATCTTTGACATAAGACTGATTCCAAAAAT
GACACTCGAAATGAACTTTCTTCAggaatttcattaaaatgaactTGATA
CACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAATTGTTCTC
GTTGTGTATAATCGTAGCCTGGAAGTTCTATACACTTTATGAATTCGTAC
GTTTCTATGGGTGATTCGGAGCTTTCTATTGTAGAAAATAAGTCTTTGAT
TGCTAAAATACTGGAGTCATTGGTATCAAGAGTTTTAACAAATTCACGGA
AGGTATCAATAGTGTATAATGATTGAATCACTGAATTGAAGAAACATACA
TTTTGTCCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTGATGAAATT
TACAGTATTATTATGTATGTTATTTGGGGTTCCTCGaaaacacgttttct
tttttggtCTTCCTCTTGGAGATTTAATTGCATTGTTAATTGGCCCTGGA
TTTAATTCTACATCTCCATCTACAATAAGCCGAGTGATTAGCAAAAAACT
TGTATCGTAAGCAAGGGGTTCGTTATTTGTATATTTGTATTGCAAGTATT
GTAAGTTCGAGTGGCGTTTATAATGGTCGTGCCTTTCTTGACCTTCGTAA
TGGCGATTATAGTCAAACCAAGGAAGTAAAAGAGAGTATCCCTTACTACC
TTGGCGGTGCCTTCGTTGACTTTGGCTGATATCAGCTCTTTTGGTGGgca
tgtttttttgttttttttgttttgtttattaatttcgcatagcgaaagta
ttacgatagtcttTCTGTGTGCGTGCGtggcgagaaaattttttgggcgc
aaattatggcgtgggcgtttggctgcgggcgtactacggccaatattcta
aaggtggactcactcacaaagataaaaaacagcgcttttcttgATAATCA
AAATACTCTAGTGCAAGATGTGTAACCAAgtctttgtaaacattcatctt
catcatgagaactttttaatggctgcttgattgcacatgcttttgaaact
tgctgctgttgtatacatttttattatgttttctggtcttttgcagagta
tttaaagaggtttattattcgtt Coding sequence (CDS) from alignment at scaffold_336:127943..129965 >TCONS_00060195 ID=TCONS_00060195|Name=TCONS_00060195|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_336:127943..129965 (Clytia hemisphaerica)
TCAATTTCTTGATTGCATTTCTTGTAAATCAATACGTATGGAANTTTCAA
CTAACTTTGATTCAATTTTGAAAGTATTGGGAATTTCTGAACTTTCAATG
AAAATGCTATCTTCACTAGAGGTTTGGTCACGAATTTTATAATCGGAGTT
CAGAGGCAAAGAATCGATTTCTCGATTGCATTTCTTGTAAATCAATATGT
ATGGAACTATTTTATCACTAATTTTGCAGTTAAACTCATCACCTTTAATA
ACGGTAACATGATCATCATTTACTGAATACCATTGTTCATTATATTTTAC
AACAGATGTATAATGACCACTATCAGGTGTATCACCGTGATGATAAACAA
TTGCTTGTAATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTG
TAATTCAAGTGTCCCGAGAAGAACGTTTTCTATTTCTGTTTCAATATTTA
AATTTGGAACTAATTTCTTCAAGCGTCCGGTGGTTTGATCATAGCAAAAA
AATACAAGTTGAATGATCAAGGCATGAGAAACATTAAATAGGGTTCTACT
TTTTGTGGCATTTGTTGTTATTGGGCAATTTGAGCATACGTAGTCTTCAA
TAAGTTCACCGTAAGGATCATTAGTTAATTTctcaatcaaatttttcatc
gaattatcaggactaaaaggactaggaaatTGAATCCGACACATATTATA
GTATTCTGTCCGTTCAGAAGGATTATTGCATCTTTGACATAAGACTGATT
CCAAAAATGACACTCGAAATGAACTTTCTTCAggaatttcattaaaatga
actTGATACACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAA
TTGTTCTCGTTGTGTATAATCGTAGCCTGGAAGTTCTATACACTTTATGA
ATTCGTACGTTTCTATGGGTGATTCGGAGCTTTCTATTGTAGAAAATAAG
TCTTTGATTGCTAAAATACTGGAGTCATTGGTATCAAGAGTTTTAACAAA
TTCACGGAAGGTATCAATAGTGTATAATGATTGAATCACTGAATTGAAGA
AACATACATTTTGTCCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTG
ATGAAATTTACAGTATTATTATGTATGTTATTTGGGGTTCCTCGaaaaca
cgttttcttttttggtCTTCCTCTTGGAGATTTAATTGCATTGTTAATTG
GCCCTGGATTTAATTCTACATCTCCATCTACAATAAGCCGAGTGATTAGC
AAAAAACTTGTATCGTAAGCAAGGGGTTCGTTATTTGTATATTTGTATTG
CAAGTATTGTAAGTTCGAGTGGCGTTTATAATGGTCGTGCCTTTCTTGAC
CTTCGTAATGGCGATTATAGTCAAACCAAGGAAGTAAAAGAGAGTATCCC
TTACTACCTTGGCGGTGCCTTCGTTGACTTTGGCTGATATCAGCTCTTTT
GGTGGgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060195-exon-scaffold_336-1491911889:127943..129965 | TCONS_00060195-exon-scaffold_336-1491911889:127943..129965 | Clytia hemisphaerica | exon |
| TCONS_00060195-exon-scaffold_336-1510915933:127943..129965 | TCONS_00060195-exon-scaffold_336-1510915933:127943..129965 | Clytia hemisphaerica | exon |
| TCONS_00060195-exon-scaffold_336-1575043694:127943..129965 | TCONS_00060195-exon-scaffold_336-1575043694:127943..129965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:127943..129965 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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