TCONS_00060098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060098
Unique NameTCONS_00060098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060098 ID=TCONS_00060098|Name=TCONS_00060098|organism=Clytia hemisphaerica|type=transcript|length=2808bp
AGTTCACATTCAGATTGTTGCATTTATTTCCTTCTTTATTTTCTGTTCGC
TTCCACTTTCCATTTTAGAAAGGttataaaatgaaagaataagTAAAAAT
GTCTTGAAAGAAATTACCATCACCATAACGACATGTTCAATAACAAGATC
CGTCTGCTCATACCTAACCATCGCACCATCATCGAAAACAACAAAAGCTT
CACgGTTTACTGCGTGGAAGTTGTTTGCGACGGCAAAGTAACCAATGTTG
AACATCGATACAGCGAGTTCTATGAACTGTACAGAAagCTTTCAAAGATG
ATCGCAGGAAAGATTGTCTTTCCACCCAAACGATTATTGAATAATAAAGA
TGTCAAGTTGATTGAAGCCAGAAGGAAAGGTCTCCAACAATACTTACAGA
CGGTTTTGTACACGTTTCAAGACAACGTACCACCTCGTTTGTTGGATTTT
CTCGGTATCCCTGATTATTATGATCAACAATACGATAATAATTTCACGAC
TGACGAGTTGAATTCATCCTTGGATGGTGACCAGAAtggaCATGACAATA
CATTTTCTGCAACCCAAAATATGATTTGCTTTCATTTGGAAGAAGAAAAC
ACTCTTCCAGACATTATCAATAAAGGTTGTTTAGAGGGCATCTATGGATA
ATTTGCTGTGCAACCATTCCAAGATAAAATTGTAAATAGATTTTTTGATA
TAGTGAAATTTGATATTTGAATGATTACTTAGTAATAGATTATTATAATT
ACCTGTTTCCATTTTCCGATTTAAATGATTGCTGATCTATGTGTTGCATT
GAAATGTTAAAACCTTTCTAGTTAACCACCTTCATACTAATAATTTAgcg
gtttttttcttttagtgtaAAAAAGTAAAGggacaaaaaagaaaagttac
GGTATAATCGAATAAGAGATGGCGGCACACATGGAGCGATTCAAGTTGTT
GGTGGTCGGTGATTGCGGTGTGGGCAAATCTTCTTTTGTTTGTGGCGTGG
TTCATCAAACACCCTTGCAAAACGCCCCTTCTACCATTGGATGCAACGTA
GAAGTGTTACCTTACAGTTACGATGACAATGGACGACAACGGGATGTATT
TTTGGAGTTTTGGGATGTTGGCGGATCATCTGGTCATCGTAACAGTCGTA
GCATCTTTTATAATAACATCGATGGTTTGATTGTTGTGCATGATTTATCA
aacagaaaatcctttttaaatttacaaaaatgggTTGGGGAAACATTCAA
CTCAAACCGTCAGGAATTCACGGGCATCACGGTTTCAGGGAGCGATGGTT
CACAATATAATGATGACGAGTGTGATGCAATTTCCCATGGAGGTGGTAGA
AAGTCAACTACCAATATCCCAGTGTTAGTGTTGGGCACAAAGGAAGACCA
ATGCAACAATGCAGGAGAGCAGAAACGAAATGCGCACCATATTGGATTGT
CTAATGATAGTGACGTCATCTTCTGTTCCATGAACTGTCTACAAGAGGGG
CAACTCCAAAAGAACAGTAATAAATGGCAGTCTTTGCATGCCTTCTTTCA
TAAAGTAATTGATGTTCGGTTGAATGGTGCAACACGTCGAAATACGAACC
TCGAAAGTAATTCCGAGTTTAGAGGCCGAAAGAAGATTTACTGATTTGCT
TCAAAGAGCGATTTGAGAAGATTCAGACTTATTACTTGATAATAATTTAT
TATACTTTTTAGATTTCAACAGAATTATTTAAATGATATAAATGCCTTGT
TATAATTCACCATTAATTTGTTTCGATTTTTCTGACCCTTGAAGCTCTAC
AGATTGAAACTCAAATCGTATTTCTTGTTTAGGTGAGAAAAATAGTAATA
CAAAATAATGAGCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAG
AACTGTCAGTTGCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCC
TTGTTGCTCCGTTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGA
GGCGAAGACAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAG
GTTTCTTCAtcgatgaagatgaaaatgaagaagaagaaatggtCAACGCG
GCTGACTTGCCCAAACAACCTGGTCCTATCATAGATGGTAGTGAAGATCT
GTGTGAAGATTGTCACAAGAAATTTTCCGACTCCTATTTGTTGAAACATT
TTGATGTTCAAGTTTGTGATGCGTGTAGAAGTTTGCAGAAAGACGAAGCG
TACAAAATGATTACAAAGACTGATGCAAGACAGaaattttgtctGAAAGA
TTGCGATTTCGACATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaa
atcctcataATGATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAG
GTTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGa
gcaaaaagaaaagagaactgataataaagaaaaagctaaaaggaaaaaat
atgaaaaacgaATCAAAGAACTTCGAAAAGCAGTACGTACAAGCACTTGG
CAGAAGGACTTGTCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGT
TTACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATC
ATCAAATTACTTACGAGAAGATGTGAGAAAGAAATATCCCattgtcaaaa
gaaaaaagtaatcCTCGCAAACAGGTACACCCCTGTACTTGCTTTCCGGG
ACAAAAGTATTCCCGAGAGTATATTTTTATTAGGAAATTGGTACCCTCTA
CAGGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_334:232316..243196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060098 ID=TCONS_00060098|Name=TCONS_00060098|organism=Clytia hemisphaerica|type=transcript|length=10881bp|location=Sequence derived from alignment at scaffold_334:232316..243196+ (Clytia hemisphaerica)
AGTTCACATTCAGATTGTTGCATTTATTTCCTTCTTTATTTTCTGTTCGC
TTCCACTTTCCATTTTAGAAAGGttataaaatgaaagaataagTAAAAAT
GTCTTGAAAGAAATTACCATCACCATAACGACATGTTCAATAACAAGATC
CGTCTGCTCATACCTAACCATCGCACCATCATCGAAAACAACAAAAGCTT
CACggtaaaataaaattgttttttgtggCTGGCTAATTACAGTGcagtct
ctttaattcgaaccttttataactcgaacctctttaaACCGAttgtttcc
ttaactcgaacaagttttctgttCCCTTCCGttattaacaatgccttata
aaccttactccataactcgaacaaatttgtgttccccgtgcgtgtttgag
ttatggagccTCTACTGTAATGTGCTCTGAGCCCCTCCccggttattaat
ttttgatttcgACCCCTGGACCTTTTTAAGACCCCCATTAaagaattttg
gaaaatatttccaGCTATCGATAAAAAAGCCccttattttgctgtaaata
gGCAGGTTTCAGTCTATCATTACCTTATGTCGGAGTATTTTGGAGGTAAA
TCTTAGAAACCCGTCAATTAGCACCAGCCCCCTCCCCGACAAAGTTGAAA
AAAAGCAATCCGTAGAGaaacaattttgtaaaatgtCCTTTAATTATGAG
ACTCTTTCCTGGTTTAGACTTATCTTAGAGTCTTTTGATATGAAGGAAAA
GACCTTATCATCCGCATTCACCATGTAAAGTTAACCATACTTCTTTAATC
GTTTTACTCGACTTATGTTATCCCTTTAGGTTTACTGCGTGGAAGTTGTT
TGCGACGGCAAAGTAACCAATGTTGAACATCGATACAGCGAGTTCTATGA
ACTGTACAGAAaggtaaaacaaaaatttttcaaacatatCTTCCCAAAAC
ATCGCAAGTCtccaaacttttaaattttaataaagATCTAATCTGAAAGT
CAAAGTCCTATGGTTTCTGAAAATACCATATTTCCATTATTTCCCAGTTT
ACCTAATACTACTTTTCAAGCTTTCAAAGATGATCGCAGGAAAGATTGTC
TTTCCACCCAAACGATTATTGAATAATAAAGATGTCAAGTTGATTGAAGC
CAGAAGGAAAGGTCTCCAACAATACTTACAGGTAACTCACAAAAGCCTCG
TTGGTCAAGCTGTTCTCCTAGTTATTGTATTTTGCTAACCCAGAACCCCC
TATAAGACTACGATACGCACTTATACTTAACAGACTTTAGTTCATCTGGT
AGGCGAATGAGggagaaaattcgaaaaaacttCCAAACCTCTACTACTCG
AATGTCTCAATAACTCGAACGGTTTCCTTCCCCTGGGCCTGACTGTATTC
GCGGTGATAAACCACCTAGTTTAAAATTGTTAATCAAATGATCAATGAat
aattgaatatttttgtttgacTTTTGTTTGACTTTGTATCTATCTTCGCA
GACGGTTTTGTACACGTTTCAAGACAACGTACCACCTCGTTTGTTGGATT
TTCTCGGTATCCCTGATTATTATGATCAACAATACGATAATAATTTGTGA
GTATAACCTTCCTAACATTTACTGGAAAACCATCTATTGGCCAGTCATAG
GTAATTAGTCTGTTGCAAAATAGGCAAAATAAAAACTGAATAAGAATCAA
ATTGCATTCGTGTAAATCTCANTTTGGCAACATCGGCCACTCATAAGTAA
TTATTCTGTTGCAAAATAGGCAAAATAAAAACTGAGTAAGAATCAAATTG
CACCCGTGTAAATCTCATAACATCGGACTCTAAAGCCTAaccttgttttc
ttgttttcctTACGTTAACAGCACGACTGACGAGTTGAATTCATCCTTGG
ATGGTGACCAGAAGTAAGAATGTTTGCTGCACCTCATTTTGTGACTGAct
ctttctttttgtcattccctacttttaggttccaaataaacgcccccctg
cttgttaatgttttcagctgtcaacgagaaggccccttattttgctctaa
atagcctgattttgacctatatttaccttatttttgggttttcagaagta
caattttcaacccccccccGACAATtaggggggcccgtttattaaaatct
tgaaaattttccacccccccTCCCCCGCCAGTTTATTTGGAACTTTTAAG
AGTACTTGATGCtcgttaaaattattttttttgcctgaacaTCTTTTTAT
TTCGTTCTGTATTcgattcattgttttttttcagtggaCATGACAATACA
TTTTCTGCAACCCAAAATATGATTTGCTTTCGTAAGGATGCGTTCCTTGT
TCCAACGCTAAAAGGTACAATTCTAGATTTTGTAGATATAaaccagcggc
cgaggtagtgaatAGTGTCACTTCGTAGGACACCCCTTAGATCATAATTT
CACACCCTATTAAATTGGCACGGAATTCTTACATTCAAAATCTTCGATAC
ATTTGACCAAGATATGTTAGCAATATAGATGACCAGAGTTTCAACGAAGT
GTATCAAAGAGGAAAAACAGTCTTGAAATCAAACTAAGGCTCCTGAAATT
CTGAAGGacgaaagttttctttttcgCTCAACCATCATCATATCTCAATA
TCTTTCTAGTTCGTAATATCAGCTACAAACAACAAATTACTGTTAACATC
GTTTTAAGGCATTTCCAGCCTACAATCTTGCTTAAACCTTTGCTTTAACT
TCTCTTCTTCGCAAAGTTAATAAATAAAAAGCGATTTCAGAGGATATGTT
ATGACCATTTACCTTACATTTTCACCTTTTCAGATTTGGAAGAAGAAAAC
ACTCTTCCAGACATTATCAATAAAGGTTGTTTAGAGGGCATCTATGGATA
ATTTGCTGTGCAACCATTCCAAGATAAAATTGTAAATAGATTTTTTGATA
TAGTGAAATTTGATATTTGAATGATTACTTAGTAATAGATTATTATAATT
ACCTGTTTCCATTTTCCGATTTAAATGATTGCTGATCTATGTGTTGCATT
GAAATGTTAAAACCTTTCTAGTTAACCACCTTCATACTAATAATTTAgcg
gtttttttcttttagtgtaAAAAAGTAAAGggacaaaaaagaaaagttac
GGTATAATCGAATAAGAGATGGCGGCACACATGGAGCGATTCAAGTTGTT
GGTGGTCGGTGATTGCGGTGTGGGCAAATCTTCTTTTGTTTGTGGCGTGG
TTCATCAAACACCCTTGCAAAACGCCCCTTCTACCATTGGATGCAACGTA
GAAGTGTTACCTTACAGTTACGATGACAATGGACGACAACGGGATGTATT
TTTGGAGTTTTGGGATGTTGGCGGATCATCTGGTCATCGTAACAGTCGTA
GCATCTTTTATAATAACATCGATGGTTTGATTGTTGTGCATGATTTATCA
aacagaaaatcctttttaaatttacaaaaatgggTTGGGGAAACATTCAA
CTCAAACCGTCAGGAATTCACGGGCATCACGGTTTCAGGGAGCGATGGTT
CACAATATAATGATGACGAGTGTGATGCAATTTCCCATGGAGGTGGTAGA
AAGTCAACTACCAATATCCCAGTGTTAGTGTTGGGCACAAAGGAAGACCA
ATGCAACAATGCAGGAGAGCAGAAACGAAATGCGCACCATATTGGATTGT
CTAATGATAGTGACGTCATCTTCTGTTCCATGAACTGTCTACAAGAGGGG
CAACTCCAAAAGAACAGTAATAAATGGCAGTCTTTGCATGCCTTCTTTCA
TAAAGTAATTGATGTTCGGTTGAATGGTGCAACACGTCGAAATACGAACC
TCGAAAGTAATTCCGAGTTTAGAGGCCGAAAGAAGATTTACTGATTTGCT
TCAAAGAGCGATTTGAGAAGATTCAGACTTATTACTTGATAATAATTTAT
TATACTTTTTAGATTTCAACAGAATTATTTAAATGATATAAATGCCTTGT
TATAATTCACCATTAATTTGTTTCGATTTTTCTGACCCTTGAAGCTCTAC
AGATTGAAACTCAAATCGTATTTCTTGTTTAGGTGAGAAAAATAGTAATA
CAAAATAATGAGCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAG
AACTGTCAGTTGCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCC
TTGTTGCTCCGTTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGA
GGCGAAGACAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAG
GTTTCTTCAtcgatgaagatgaaaatgaagaagaagaaatggtCAACGCG
GCTGACTTGCCCAAACAACCTGGTAAGTTTTCTCACTGGTTAACTCTCCC
TTTCGCATCACAACCAGACACAATAACACACAGGTGTCAGAAATATAAAT
ACTATGCTTGAAATTATACAATTTAGCCgttgtcttattttttaatttga
ccTGCTTTTTTAAGAGAAACTGCGATTATACATTATTCATCTTTATATTT
TAGGTCCTATCATAGATGGTAGTGAAGATCTGTGTGAAGATTGTCACAAG
AAATTTTCCGACTCCTATTTGTTGAAACATTTTGATGTTCAAGTTTGTGA
TGCGTGTAGGTTAGTTTGCTTTGTTATCTTTACTTGATTCTAGATTCCAA
AATTTATCTTAATAATATCTTAGAGTTAAGTCCAAAGCACGTGGGCACGG
GTTGATTACCAATTTGTTctagtaaatgaaaaaagaaacgtCTCTAAGAG
AAGTAAATTCCTTTTCTCTTTATGATTTATAAAACAGTAATTTCTGATCT
GCGAGGGATTTTTTTGACTAGAGTTGTAAAAATCCATGCGTAATCTATCG
AATTTTTCGATTATCGAATtaatcgaaactaatcgaagCTAATCGAAGCC
ATTATATTTCGATTAGTCGAAATAATCGAAGCCTAATCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTCATGTTCAATGGATGG
TCCGCTCAACGAtgtgtaaagcccgaagggctagatctctagcttttgct
gaaaattgtGTCGAAGTTAGATAGGAAATCCTaactaagtcacgtgacat
tataatagaatttcagcgcttgaccaatcagaagcttagCCAATTTTCGG
AAACAATAGCAGAAATACTTTTTCCAATATGtactcactttttttcttgc
ttaACCTGAGAACAGATTGtaattgttttctgcccaccacgctgaagctc
taaagggatgggcgaaaacaaacaatctgacgactTTGTTGGACGGATTC
ATGCGAGACCGCGTTCAAAACATCCTGGAAACTAGCGACACCGCTTCAAA
AtttgttttgattttgctgcAAAGGATTATGGGTAGATTATTTTTGATAG
ATTTGGCGGGTGAGAAATGGCTCAAATGGGGACCCGTTTTTACAACGAGC
ACCTTGTTGTAAAACTTTCAAAGCGGTATGGCCAATGTCCACAGATGTAT
ATTTCGCATCGTACCtttagagcaaagcgtgtcgaTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCAAGTCCGTTTGTCCTAGATGTCCGTCGAACCTT
TGCACCAACTCAACCCCTTTGAACATTTGATATGTGATTGATTTCGTTGG
TTCTAGTGTTGGTGAAGGAGCATTTGATGACAGAGAAAGACACCGAACAA
AAAAactgatatttttcaaattgctaATTTCAGCCTCGACAGCTGAATGA
GCTGTTTTTGTACCGTACCGACGAATAATTCGAACAACTTTACCATATGT
AAATTGACGCGATTTTGTGTCTAAGAAACAGCATTCATCGTTGATTTTGA
TGTTGGTTTCGAGCGTTGAGGTGTTGTTATTGAGCTGCTCAAAAAACGAG
GTTTGGTTACTTGATTTCCATCTTTCCATTCTGCTCGCAGCTGGGCAATA
AATTTTGCCGTCGGTCAGAGACAGAAATCGAGCAATATGATAGACTGTAC
CCTCGTATTCTACATACATTGGGTTTGAGCGGTTTGttcgatttgttgat
tttcttgtgTTGGCATTTGATCCTTGGTCCAGGAGATCTTTCATAGTTAA
ATTGGAATCATTCGCTAAGCAGTTGGTGCTTCAAGAGGTATATCCGTTCT
AGAAATGAAACAACACAGCATTGAAAGTTGAATGTTACCTCTCGACCCAG
tggtaaaaaaacaaacaaaagaaatggAAATACAGTCAAGCAAACTACTG
AAATACGATAAAAAATAATGGACTTTCCTCGCTTTCCTAACCCTGCTGGA
AGAAATGCAACCCAGCTCGAAAAAACTTTCATCACATGTTATGAAACCCA
TTACTAGTAACAATATTGATTGAATAGTTTGAagatagtttgttcttata
taaaaaaacgtgtatgaattTTTGGGACACTGTAAAGTTTTTCGGGATTC
CTTATAGTTAATATATATCAGCACAGTCTTTTGGCATGTTTCTTGCAAGT
GTGCTTTTTGACTAGAGTAGGCCAAGTTCTGTAAAACCGGGGTATAcatc
ttttatttcaatttctcaCCCGGGTTGAGATTATTCAGCTTCAATTTTCT
GGGGTGGCTGGGTGATTTCTTCCCTCGAATAGGCAAACACAAATTATTCT
GCCATAGAATGTAAAGATTTTTAAGCACCACACAAAACCATAGAACGACG
ACGAGGGACCGATAACAAACACCAAAATGTTCATCACCAGGCTCGGAAGG
TAAAAAGATCTTTCACGGCTATCAGATTTTAACCAAATTTGACCCGATAA
TACCTTGAGGGAAGAAATTTAATTTCACGGTTGAGAGAATTTTCTGTTCA
AAATATGgcttattttgccctaaaaataccaattttcgggtaatttcttt
caatcataaaaatatttgtgtttCGCGGATTTGCCAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAttatc
gaatctcaatcgaaacCTATCGAAAGTTAATCGAAGttatcgaacataat
cgaatatatCGATATTAATCGAAGCTATCGAACATTAATCGAAGCTTATC
GATAGCtaatcgaagtaatcgaatggtaatcgaactaattgagaaaaacc
ttggaaaattcgattaattcgattacGGCTCGATAGTTTCGATAAATTCG
ATTTAAAATCGAattcgattttgttcgatagATTACGCCTGGACTACACT
AACGGACTTTACATACATTTTATCTGAATTCTACCAAAAGTTAACCAATC
GAGACGCAACCTTTGCTTTCATTTTAGAAGTTTGCAGAAAGACGAAGCGT
ACAAAATGATTACAAAGACTGATGCAAGACAGgtatttacaattttcatg
tgtctttttttgcttttcGTTGCCCTCTCTCGAGGTTATCAGCTTTTTGC
AGTATATTAATTTGAAACCTATTAACCAATATTCCGtctcaattttagaa
attttgtctGAAAGATTGCGATTTCGACATTCGAGAGCCTCCATTGAAGT
TCATcgttcgcaaaaatcctcataATGATCGCTGGGGTGACATGAAGTTG
TACCTGGAACTGCAGGTGAAACCTTTCTTTGCGTAAACTCCAATAAAATT
CCAAACAGAAAGAACTAGAAAGCGACAATAAAACTTGCATATTTTGCACC
GTATAATGCcgtaaaaaattaataaaagagATACACAAACAGAAACTAGT
GAAAATTAATCAATTACACCGATAATTTGGAATTCTATTTTGTTATTCAT
TCTAACTTTCTCATTTTGTATCAGGTTCACAAACGCGCCATGGAGGTCTG
GGGTGACGAAGAGACACTGGAGGagcaaaaagaaaagagaactgataata
aagaaaaagctaaaaggaaaaaatatgaaaaacgaATCAAAGGTTTGTGA
CAGAggttatacatgtttttttagaaGCATTGTTGCATAAAAATTTTAAG
CATATCCTAAGCATTATCTGAGCCTATATTATCCGGCTGGAATTTACCTT
AAATTTTGCTTAGTTcgagcaattttcagccttgtcAATCTCTTGATCTA
AGCATCTCCCAGccagtttttgaatttttgtatgcttatacaAAACTTGT
GCTTTTGGTAACCTCATTTGGTGGCTTTCATTGATTGAGCCGTCAACTCG
TTTTCAACTTGTCAACTCCTACTGGAGTCTTTTTCATGCTTTACGAATAT
GTTAGGGGTTAAATGACATGATGATTAATGTGACGGGGAAGTATTGGATA
CATTAAACTGTACTTGACGTTCTTCAACAGTTTGCCCTACCGTTCTCTAC
TTTTTCGTAAATTGGGCAGTTTCAAGAAAACACCATTACTTCTGTGGACG
ActggggaaattttgaaaaggttCCGGAAGATGCAGGATTTTCCTAATTA
TTTGGTCATCCGCATCAAAAAGATCTTGAATGTTACGGAAATCATAAAGT
TTTTCATAATTTAGTTGTTAcggaaaatccattttttccaCAGGGGGGTA
ACGGACTATAACTGGAACCACCCATTTAGCCTAGACTACCAAGTCTTCTG
ATAGAATTATTGTTTACCATATTATTCTCTATCGGATGTAGAACTTCGAA
AAGCAGTACGTACAAGCACTTGGCAGAAGGACTTGTCGAAGCACGTGCAC
GACTATGATTCTGCGAACGAGGTTTACGATGAAGAAGAGGACGTCTATAC
AAAGAAGTGTAAAACATGTGATCATCAAATTACTTACGAGAAGATGTGAG
AAAGAAATATCCCattgtcaaaagaaaaaagtaatcCTCGCAAACAGGTA
CACCCCTGTACTTGCTTTCCGGGACAAAAGTATTCCCGAGAGTATATTTT
TATTAGGAAATTGGTACCCTCTACAGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037812XLOC_037812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060098-exon-scaffold_334-1491911889:232316..232519TCONS_00060098-exon-scaffold_334-1491911889:232316..232519Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:232316..232519TCONS_00060098-exon-scaffold_334-1510915933:232316..232519Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:232316..232519TCONS_00060098-exon-scaffold_334-1575043694:232316..232519Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:233145..233228TCONS_00060098-exon-scaffold_334-1491911889:233145..233228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:233145..233228TCONS_00060098-exon-scaffold_334-1510915933:233145..233228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:233145..233228TCONS_00060098-exon-scaffold_334-1575043694:233145..233228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:233386..233496TCONS_00060098-exon-scaffold_334-1491911889:233386..233496Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:233386..233496TCONS_00060098-exon-scaffold_334-1510915933:233386..233496Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:233386..233496TCONS_00060098-exon-scaffold_334-1575043694:233386..233496Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:233817..233911TCONS_00060098-exon-scaffold_334-1491911889:233817..233911Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:233817..233911TCONS_00060098-exon-scaffold_334-1510915933:233817..233911Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:233817..233911TCONS_00060098-exon-scaffold_334-1575043694:233817..233911Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:234187..234228TCONS_00060098-exon-scaffold_334-1491911889:234187..234228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:234187..234228TCONS_00060098-exon-scaffold_334-1510915933:234187..234228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:234187..234228TCONS_00060098-exon-scaffold_334-1575043694:234187..234228Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:234600..234646TCONS_00060098-exon-scaffold_334-1491911889:234600..234646Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:234600..234646TCONS_00060098-exon-scaffold_334-1510915933:234600..234646Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:234600..234646TCONS_00060098-exon-scaffold_334-1575043694:234600..234646Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:235149..236687TCONS_00060098-exon-scaffold_334-1491911889:235149..236687Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:235149..236687TCONS_00060098-exon-scaffold_334-1510915933:235149..236687Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:235149..236687TCONS_00060098-exon-scaffold_334-1575043694:235149..236687Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:236869..236974TCONS_00060098-exon-scaffold_334-1491911889:236869..236974Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:236869..236974TCONS_00060098-exon-scaffold_334-1510915933:236869..236974Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:236869..236974TCONS_00060098-exon-scaffold_334-1575043694:236869..236974Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:241593..241647TCONS_00060098-exon-scaffold_334-1491911889:241593..241647Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:241593..241647TCONS_00060098-exon-scaffold_334-1510915933:241593..241647Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:241593..241647TCONS_00060098-exon-scaffold_334-1575043694:241593..241647Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:241764..241880TCONS_00060098-exon-scaffold_334-1491911889:241764..241880Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:241764..241880TCONS_00060098-exon-scaffold_334-1510915933:241764..241880Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:241764..241880TCONS_00060098-exon-scaffold_334-1575043694:241764..241880Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:242090..242207TCONS_00060098-exon-scaffold_334-1491911889:242090..242207Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:242090..242207TCONS_00060098-exon-scaffold_334-1510915933:242090..242207Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:242090..242207TCONS_00060098-exon-scaffold_334-1575043694:242090..242207Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1491911889:242907..243196TCONS_00060098-exon-scaffold_334-1491911889:242907..243196Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1510915933:242907..243196TCONS_00060098-exon-scaffold_334-1510915933:242907..243196Clytia hemisphaericaexon
TCONS_00060098-exon-scaffold_334-1575043694:242907..243196TCONS_00060098-exon-scaffold_334-1575043694:242907..243196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:232316..243196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.07469	3.77926	2.38618	0.183905	0.217298	0.166406	0.757473	2.20932	1.48384	0.362892	0	0.977716	0.362199	1.81376	1.8672	2.24374	4.0141	3.38873	0.662687	1.74848	2.81354	2.28505	3.24539	3.81465	0	0	2.02234	2.97076	3.85194	4.31888
Blast
[Close]
BLAST of TCONS_00060098 vs. Swiss-Prot (Human)
Match: XPA (DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 4.964e-55
Identity = 100/186 (53.76%), Postives = 142/186 (76.34%), Query Frame = 1 
Query: 2116 QPGPIIDGSEDLCEDCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCDFDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQKEKRTDNXXXXXXXXXXXXXXXXXXAVRTSTWQKDLSKHVHDYDSANEVYDEEEDVYTKKCKTCDHQITYEKM 2673
            QPGP+++    +CE+C K+F DSYL+ HFD+  CD CR    D+ +K+ITKT+A+Q++ LKDCD + REPPLKFIV+KNPH+ +WGDMKLYL+LQ+ KR++EVWG +E LEE KE R +N+EK K+KK++K++KELR+AVR+S W+++   H H+Y     +   E+D+Y K C  C H++TYEKM
Sbjct:   93 QPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRD--ADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENL---EDDMYRKTCTMCGHELTYEKM 273
The following BLAST results are available for this feature:
BLAST of TCONS_00060098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPA4.964e-5553.76DNA repair protein complementing XP-A cells OS=Hom... [more]
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