TCONS_00059775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059775
Unique NameTCONS_00059775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059775 ID=TCONS_00059775|Name=TCONS_00059775|organism=Clytia hemisphaerica|type=transcript|length=329bp
NNCCGGTCCAAGTTGGAACATTTTGAACCTCTGTGACTTTAAAAAGCTCA
CTTAAGCACGATTTCAATGGATAATAactagtttttaatgaaatttaagc
aAACTAAACTTTGGCCTAACACCCAGCGAAGGAGGGAGATTTATTCAgat
tctttttgcatatgttttggaaaaaatgattCTAGGAGAAAACACAGGAT
TTCCAGCTTCGTAAATCAAAGGAAAACCTAAATAataatgttatattttc
ttcaaaaacaccaaaaatcctgtttttcaatgaaaacgcCAACGGAGctg
tgcaaaatagcgtttggAGCCCTCTTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_330:460504..460832

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059775 ID=TCONS_00059775|Name=TCONS_00059775|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_330:460504..460832 (Clytia hemisphaerica)
GAAAAGAGGGCTccaaacgctattttgcacagCTCCGTTGgcgttttcat
tgaaaaacaggatttttggtgtttttgaagaaaatataacattatTATTT
AGGTTTTCCTTTGATTTACGAAGCTGGAAATCCTGTGTTTTCTCCTAGaa
tcattttttccaaaacatatgcaaaaagaatcTGAATAAATCTCCCTCCT
TCGCTGGGTGTTAGGCCAAAGTTTAGTTtgcttaaatttcattaaaaact
agtTATTATCCATTGAAATCGTGCTTAAGTGAGCTTTTTAAAGTCACAGA
GGTTCAAAATGTTCCAACTTGGACCGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037604XLOC_037604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059775-exon-scaffold_330-1491911889:460504..460832TCONS_00059775-exon-scaffold_330-1491911889:460504..460832Clytia hemisphaericaexon
TCONS_00059775-exon-scaffold_330-1510915933:460504..460832TCONS_00059775-exon-scaffold_330-1510915933:460504..460832Clytia hemisphaericaexon
TCONS_00059775-exon-scaffold_330-1575043694:460504..460832TCONS_00059775-exon-scaffold_330-1575043694:460504..460832Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:460504..460832 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295637	1.0433	0.669471	0	1.59473	0.364719	0	0.520179	0.692401	1.50112	0.29952	0.251938	1.0308	1.31728	1.41195	1.63	0.221934	0.45495	0	0	1.15456	1.67613	3.27174	1.30121	2.05587	3.26876	0.810755	1.0395	1.91526	3.09455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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