TCONS_00059729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059729
Unique NameTCONS_00059729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059729 ID=TCONS_00059729|Name=TCONS_00059729|organism=Clytia hemisphaerica|type=transcript|length=1275bp
CTTCTTTGGTTGGTAATACTGCCTTTTCTTCGGTCTTTGATTCTTTCAAT
TGACCCTTGTCGAAATCTTTAACAGCTGAAACATCTGGAAGGACCTCTGG
GCGAGTTTCCTCTTTGAGAGTGGCCGCAGTTGGTAAAGTATTCTTTTCTT
CTGTATCAACGGATTTAAGTTTTGATTTATCGAAAGCTTTAACCTCAGAT
CGTGATTCGACTGCTTCTTCTTTAATGACTTCTGCGGTGGGTAAAACGGt
tttttcttctgtttctaCATGTTTTAATTTAGCAGCATCAAATCCTGCAA
CTCCAGAAACATCTGGCAGCACCTCTGGACGAGTTTCTTCTTTTAAGGTT
GCAGCAGTTGGTAAAGTGTTCTTTTCCTCTGTATCAACAGATTTAAGTTT
AGATTTATCAAAAGATTTGACTTCTGATCGAGATTCGACCGACTCTTCCT
TTATTACATCTGCGGTGGGTAAAACAGTTTTTTCCTCTGTTTCTACATGC
TTTAATTTGGAGGCATCAAATCCTGCAACAGCTGACACGTCTGGTAACAC
CTCTGGACGAGTTTCCTCCTTTAATGTTGCAGCAGTTGGCAAAGTGTTTT
TTTCCTCTGTTTCAACAGATttaagttttgatttatcaaacgCTTTAACC
TCAGATCTTGATTCAACCGCTTCCTCTTTAATGACATCAGCGGTGGGGAG
AACAGTTTTTTCCTCTGTTTCTACATGCTTTAATTTGGAGGCATCAAATT
CAGCAACACCTGAAACATCTGGCAAACTTTCTGGTCGAGTTTCTTCTTTC
AAGGTTGCAGCAGTTGGGAGAGTATTCTTCTCAACAGTTTCAACTGATTT
CAGGTTAGATTTGTCAAAGACTTTGACCTCTGCACGTGATTCAACTGCTT
CTTCTTGAATAACATCTGAAGTGGGTAAAACGGTTTTTTCTTCTGTTTCA
ACATGTTTCAATTTAGAAGCATCAAATTCTGCAACTCCAGAAACATCAGG
CAAGACCTCTGGTCGAGTTTCTTCTTTTAAGGTTGCAGCAGTTGGGAGAG
TGTTTTTCTCAACGGTTTCAACTGATTTCAGGTTAGATTTGTCAAAGACT
TTGACTTCTGACCTGGATTCAACTGCTTCTTCTTGAATCACTAAAAGAGA
ATGAAATACACATTGAAAATACTTCAAACTTTTATTATTGGTTATATAAC
ATAGCTTCAACCCCTATAGGATAGGAGTTTCAAGGGAGGGTTTCAGGATA
TTTAAAATTTGACACCAGAGGGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_330:311400..313130-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059729 ID=TCONS_00059729|Name=TCONS_00059729|organism=Clytia hemisphaerica|type=transcript|length=1731bp|location=Sequence derived from alignment at scaffold_330:311400..313130- (Clytia hemisphaerica)
CTTCTTTGGTTGGTAATACTGCCTTTTCTTCGGTCTTTGATTCTTTCAAT
TGACCCTTGTCGAAATCTTTAACAGCTGAAACATCTGGAAGGACCTCTGG
GCGAGTTTCCTCTTTGAGAGTGGCCGCAGTTGGTAAAGTATTCTTTTCTT
CTGTATCAACGGATTTAAGTTTTGATTTATCGAAAGCTTTAACCTCAGAT
CGTGATTCGACTGCTTCTTCTTTAATGACTTCTGCGGTGGGTAAAACGGT
TTTTTCTTCTGTTTCTACATGTTTTAATTTAGCAGCATCAAATCCTGCAA
CTCCAGAAACATCTGGCAGCACCTCTGGACGAGTTTCTTCTTTTAAGGTT
GCAGCAGTTGGTAAAGTGTTCTTTTCCTCTGTATCAACAGATTTAAGTTT
AGATTTATCAAAAGATTTGACTTCTGATCGAGATTCGACCGACTCTTCCT
TTATTACATCTGCGGTGGGTAAAACAGTTTTTTCCTCTGTTTCTACATGC
TTTAATTTGGAGGCATCAAATCCTGCAACAGCTGACACGTCTGGTAACAC
CTCTGGACGAGTTTCCTCCTTTAATGTTGCAGCAGTTGGCAAAGTGTTTT
TTTCCTCTGTTTCAACAGATTTAAGTTTTGATTTATCAAACGCTTTAACC
TCAGATCTTGATTCAACCGCTTCCTCTTTAATGACATCAGCGGTGGGGAG
AACAGTTTTTTCCTCTGTTTCTACATGCTTTAATTTAGAGGCATCAAATC
CAGCAACGGCTGAAACATCAGGCAAGCTTTCTGGTCGCGTTTCTTCTTTG
AGGGTGGCAGCAGTTGGCAAAGTGTTCTTTTCCTCTGTTTCTACAGATTT
AAGTTTAGATTTATCAAAAGACTTAACTTCTGACCGAGATTCAACCGATT
CTTCTTTAATCACTTCTGCGGTGGGTAAAACAGTTTTTTCCTCTGTTTCT
ACATGTTTTAATTTGGATGGATCAAATCCAGCAACGCCCGACACGTCTGG
TAACACCTCTGGTCGAGTTTCCTCCTTTAGAGTTGCAGCAGTTGGTAAAG
TGTTCTTTTCCTCTGTTTCAACCGATTTGAGTTTTGATTTATCGAACGCT
TTAACCTCAGATCTTGATTCAACAGATTCCTCCTTAATAACATCAGCAGT
GGGGAGAACAGATTTTTCCTCTGTTTCTACATGCTTTAATTTGGAGGCAT
CAAATTCAGCAACACCTGAAACATCTGGCAAACTTTCTGGTCGAGTTTCT
TCTTTCAAGGTTGCAGCAGTTGGGAGAGTATTCTTCTCAACAGTTTCAAC
TGATTTCAGGTTAGATTTGTCAAAGACTTTGACCTCTGCACGTGATTCAA
CTGCTTCTTCTTGAATAACATCTGAAGTGGGTAAAACGGTTTTTTCTTCT
GTTTCAACATGTTTCAATTTAGAAGCATCAAATTCTGCAACTCCAGAAAC
ATCAGGCAAGACCTCTGGTCGAGTTTCTTCTTTTAAGGTTGCAGCAGTTG
GGAGAGTGTTTTTCTCAACGGTTTCAACTGATTTCAGGTTAGATTTGTCA
AAGACTTTGACTTCTGACCTGGATTCAACTGCTTCTTCTTGAATCACTAA
AAGAGAATGAAATACACATTGAAAATACTTCAAACTTTTATTATTGGTTA
TATAACATAGCTTCAACCCCTATAGGATAGGAGTTTCAAGGGAGGGTTTC
AGGATATTTAAAATTTGACACCAGAGGGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037573XLOC_037573Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059729-exon-scaffold_330-1575043694:312407..313130TCONS_00059729-exon-scaffold_330-1575043694:312407..313130Clytia hemisphaericaexon
TCONS_00059729-exon-scaffold_330-1575043694:311400..311950TCONS_00059729-exon-scaffold_330-1575043694:311400..311950Clytia hemisphaericaexon
TCONS_00059729-exon-scaffold_330-1510915933:312407..313130TCONS_00059729-exon-scaffold_330-1510915933:312407..313130Clytia hemisphaericaexon
TCONS_00059729-exon-scaffold_330-1510915933:311400..311950TCONS_00059729-exon-scaffold_330-1510915933:311400..311950Clytia hemisphaericaexon
TCONS_00059729-exon-scaffold_330-1491911889:312407..313130TCONS_00059729-exon-scaffold_330-1491911889:312407..313130Clytia hemisphaericaexon
TCONS_00059729-exon-scaffold_330-1491911889:311400..311950TCONS_00059729-exon-scaffold_330-1491911889:311400..311950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:311400..313130 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0118249	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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