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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059725 ID=TCONS_00059725|Name=TCONS_00059725|organism=Clytia hemisphaerica|type=transcript|length=790bp
CGCTTTAACAAAAAGAACACCGAATAGTTCGGAATATAGtcaaaatttaT
ATCACATTTCAAATCAGTTAGAAGTGTACGACAGCCATAAAAGGATTGGG
ATTTAATGTGTTAAGACCTTTCCACTGTCCATAAGAGAATCGACAATCGT
TGGAACTTTCATAGAAACACAACACAACCATGAAGACCACAATCTACTTG
GCAATTTTAGCTTTCTTGGCAACCGTCTATTTCACAGAAGTTTCTTCAAT
GTCAACTGGTGGTGGTGGTATGTGGGAAACAAAGAAAAGCCTCTCAGCAA
AAAAGGATGTCGCATCACTTATACCCGACATATGCAACATTTGCTCCAAA
GCTCAACAAATGTGCTCTCAACAATACAACAGAGCTGCCTCCGCAAATCA
GAAACGATCTGCAAAATCACACCATCACAACAAACGATCTTACGCCAAAA
GACATTTTCGAGAACAACACGCACAAGAGGATGCCGAAATGAATTAACTC
GATGTCTGTCTAACTTAATATATAACCTAAAAACTTTCCATCGAGTTATT
AGATATGTTTATAAGTTCTAAAAGATAAAAGCGTCAccaaaaaaaaatgc
aaaaacactgAATAACATTGCTGGATTTTTatggtaccttttttaaccta
aTTTATTTCCTAAAGTCTTTTTATGAATATCATATTATCTGAATGCATAT
TAAATTTATGATATTATTGTCGGAGTATAAATGAATTACATGATACCAAC
CAAACTTATTTAAAAACTAATTCATTTTCCTGAAGAAGAA Run BLAST on NCBI protein sequence of TCONS_00059725-protein >TCONS_00059725-protein ID=TCONS_00059725-protein|Name=TCONS_00059725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MKTTIYLAILAFLATVYFTEVSSMSTGGGGMWETKKSLSAKKDVASLIPD
ICNICSKAQQMCSQQYNRAASANQKRSAKSHHHNKRSYAKRHFREQHAQE
DAEMN Run BLAST on NCBI transcript from alignment at scaffold_330:245675..247039- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059725 ID=TCONS_00059725|Name=TCONS_00059725|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at scaffold_330:245675..247039- (Clytia hemisphaerica)
CGCTTTAACAAAAAGAACACCGAATAGTTCGGAATATAGGTAAACAGATT
CTATCAGTGCACACATTATGTTTTCTTAAAAAGGCTAAAACGTAGCGGGG
TAGTTTCGGATATTGACCGGCAGGCATATATTTAGTTTCACTTCAGTCTC
CTACAATCTCTTCCCACGCTACTTGTATAGATATCAATTGAATCGAGCAA
AATTGGAAAATTAGATGGCTCTCATAATCTGTTCAAAAATGCGTGATATG
CAGATTCACAGTTAGAGAAACGTGTTTTGAAAGAGAGATCTCACTATGTT
TACAAAGGCGTTCCCAGCTCAATCAAAAGAACTTCTCACCGTTTTAAAAT
TTTGCAATATTAATTAATAACAGACATTTTCTGATTACATTTTCAGTCAA
AATTTATATCACATTTCAAATCAGTTAGAAGTGTACGACAGCCATAAAAG
GATTGGGATTTAATGTGTTAAGACCTTTCCACTGTCCATAAGAGAATCGA
CAATCGTTGGAACTTTCATAGAAACACAACACAACCATGAAGACCACAAT
CTACTTGGCAATTTTAGCTTTCTTGGCAACCGTCTATTTCACAGAAGTTT
CTTCAATGTCAACTGGTGGTGGTGGTATGTGGGAAACAAAGAAAAGCCTC
TCAGCAAAAAAGGTACAAGTTTCTCTGCTTTTTTCTCTCTTTAGGATTCC
CAGTTCATACATTTGATTTTTGCAAAAACATTGAGTTGTTTTACTTTAAT
CAACAAAAGATTTATATTATCAAAATTTGATTCGTCGTTCAAAAATTCCC
AAACGTTCGACCCGTAAGACGTACCCAACTGTTGCTGAAAATGAAATCGT
TTATTTTTCTATTTTTTTCTTCTATCATAGGATGTCGCATCACTTATACC
CGACATATGCAACATTTGCTCCAAAGCTCAACAAATGTGCTCTCAACAAT
ACAACAGAGCTGCCTCCGCAAATCAGAAACGATCTGCAAAATCACACCAT
CACAACAAACGATCTTACGCCAAAAGACATTTTCGAGAACAACACGCACA
AGAGGATGCCGAAATGAATTAACTCGATGTCTGTCTAACTTAATATATAA
CCTAAAAACTTTCCATCGAGTTATTAGATATGTTTATAAGTTCTAAAAGA
TAAAAGCGTCACCAAAAAAAAATGCAAAAACACTGAATAACATTGCTGGA
TTTTTATGGTACCTTTTTTAACCTAATTTATTTCCTAAAGTCTTTTTATG
AATATCATATTATCTGAATGCATATTAAATTTATGATATTATTGTCGGAG
TATAAATGAATTACATGATACCAACCAAACTTATTTAAAAACTAATTCAT
TTTCCTGAAGAAGAA Coding sequence (CDS) from alignment at scaffold_330:245675..247039- >TCONS_00059725 ID=TCONS_00059725|Name=TCONS_00059725|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_330:245675..247039- (Clytia hemisphaerica)
GATGTCGCATCACTTATACCCGACATATGCAACATTTGCTCCAAAGCTCA
ACAAATGTGCTCTCAACAATACAACAGAGCTGCCTCCGCAAATCAGAAAC
GATCTGCAAAATCACACCATCACAACAAACGATCTTACGCCAAAAGACAT
TTTCGAGAACAACACGCACAAGAGGATGCCGAAATGAATTAAATGAAGAC
CACAATCTACTTGGCAATTTTAGCTTTCTTGGCAACCGTCTATTTCACAG
AAGTTTCTTCAATGTCAACTGGTGGTGGTGGTATGTGGGAAACAAAGAAA
AGCCTCTCAGCAAAAAAGGATGTCGCATCACTTATACCCGACATATGCAA
CATTTGCTCCAAAGCTCAACAAATGTGCTCTCAACAATACAACAGAGCTG
CCTCCGCAAATCAGAAACGATCTGCAAAATCACACCATCACAACAAACGA
TCTTACGCCAAAAGACATTTTCGAGAACAACACGCACAAGAGGATGCCGA
AATGAATTAAATGAAGACCACAATCTACTTGGCAATTTTAGCTTTCTTGG
CAACCGTCTATTTCACAGAAGTTTCTTCAATGTCAACTGGTGGTGGTGGT
ATGTGGGAAACAAAGAAAAGCCTCTCAGCAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059725-exon-scaffold_330-1575043694:247001..247039 | TCONS_00059725-exon-scaffold_330-1575043694:247001..247039 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1575043694:246378..246643 | TCONS_00059725-exon-scaffold_330-1575043694:246378..246643 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1575043694:245675..246159 | TCONS_00059725-exon-scaffold_330-1575043694:245675..246159 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1510915933:247001..247039 | TCONS_00059725-exon-scaffold_330-1510915933:247001..247039 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1510915933:246378..246643 | TCONS_00059725-exon-scaffold_330-1510915933:246378..246643 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1510915933:245675..246159 | TCONS_00059725-exon-scaffold_330-1510915933:245675..246159 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1491911889:247001..247039 | TCONS_00059725-exon-scaffold_330-1491911889:247001..247039 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1491911889:246378..246643 | TCONS_00059725-exon-scaffold_330-1491911889:246378..246643 | Clytia hemisphaerica | exon |
| TCONS_00059725-exon-scaffold_330-1491911889:245675..246159 | TCONS_00059725-exon-scaffold_330-1491911889:245675..246159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:245675..247039 - |
Blast
The following BLAST results are available for this feature:
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