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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059724 ID=TCONS_00059724|Name=TCONS_00059724|organism=Clytia hemisphaerica|type=transcript|length=1017bp
CTCGAAATCTTTAAAGCTCCGTGCATCTAAAGACGTCATAATGAATACTT
GGAAAACCTACTTCATGGTTTTATTTCTCGCTTTGATTGGTGGAGCATTT
AGCATGAGCACAGGGGGAAATGGAATTTGGGAAGGTGGTAAAAAGAAACC
CAACTTGAAACAGGACACGATCTCGTTGCTACCAGAAATTTGCAACATTT
GTAGCAAAGCAAAGTCAGTATGTCCATCAAACCCATCAACGTCCTCCTCC
TCATCCTCAAGCACGTGGTCAAGCATCAACCACGCCCCTGGAAGCATCGT
CCGAtttcaaagaaagaaataaacaaaacaggaattatggaaaaaaattg
attaactCTCTGTAAGCAATACTTCATAACATTTCATCGTTTATTATCAT
TTATAATTTTTACCTTAAAAATCATTTAGAACTATTATTTACAGTGTTTT
GTGGTTAATCAAAAATATacataaaacaaatttttagtcTATCTATCTAT
CAAGACTAATTTTACTAATGAAAAAGCTTTCTATGTTGTGtaaatattat
ttcaaaaatcattggCACTATTTCGTACTATTCAAAAACTGGTCTTTAAG
CACTCTTCTCAAAAGCTTGCCGGCAGCCGATTTCGGTAATTGTTCGATAA
ATTCAACACCTCCTCTAAGTTTCTTATGATCTGAAAGTTTGTCAGCCACG
TAATCTTCAACGTCTTTTGTCGTAAGGGTTGAATCAGGTCGCTTAACGAC
GTACGCGCGTGGCAGTTCGCCCGTGCGGTCACACGGCACGCCGATGACAC
AAGCATCCGTTATTTGATCATGACCGAGGAGAAGGTCTTCAAGTTCAGCC
GGTGCCACCTGAAGAAATAAAATTCAACTCAAGAAGCGatgtttctaata
aaaaaaaactcgaTGCTTTTAAAAATATGTCTTACGAGACATGCTAAAAG
CATATGTTATCATTTGAagccatttttcaaagtttaagatttaaaaacaG
TCAAGAGATATATTTCG Run BLAST on NCBI protein sequence of TCONS_00059724-protein >TCONS_00059724-protein ID=TCONS_00059724-protein|Name=TCONS_00059724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
SKSLKLRASKDVIMNTWKTYFMVLFLALIGGAFSMSTGGNGIWEGGKKKP
NLKQDTISLLPEICNICSKAKSVCPSNPSTSSSSSSSTWSSINHAPGSIV
RFQRKK Run BLAST on NCBI transcript from alignment at scaffold_330:241325..242782- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059724 ID=TCONS_00059724|Name=TCONS_00059724|organism=Clytia hemisphaerica|type=transcript|length=1458bp|location=Sequence derived from alignment at scaffold_330:241325..242782- (Clytia hemisphaerica)
CTCGAAATCTTTAAAGCTCCGTGCATCTAAAGACGTCATAATGAATACTT
GGAAAACCTACTTCATGGTTTTATTTCTCGCTTTGATTGGTGGAGCATTT
AGCATGAGCACAGGGGGAAATGGAATTTGGGAAGGTGGTAAAAAGAAACC
CAACTTGAAACAGGTCAGTATTTTTCTTTGCGGAATTACCGAGGTTAAGC
ATACCAGGATAATCACGACGACGCGGACGAAAAATGGCTAGTGAAAATAC
GAAATTTGATTGGTTGAAACTCACTAGCCTGTTAACTTTTCGTTCGTCAT
CGTGATTTTACCGATTTACTTAACTTCACTACTGTCAAAGTAAACTCATC
GATTGCCACCCATGCAAAGTGATTGACAGGCGTTGCCGGGCGTTGCTCTT
TCGTTTTGTGTCTGTAGTTTTTGTGGCCCTGTATAATTGCAATACGTCCA
TGATGTATATAATGGACAAAAAAATGTTACGAAAACGACAACATGTTTCC
CCTCTCTGGTTCAAATCTTCATTATTTGATTTGTTTTGTGTCTACCATTT
TCACATTTGACGAACAACAAAAAAAGGTGACCATTTTTCCGATTTCTTTT
GCAGGACACGATCTCGTTGCTACCAGAAATTTGCAACATTTGTAGCAAAG
CAAAGTCAGTATGTCCATCAAACCCATCAACGTCCTCCTCCTCATCCTCA
AGCACGTGGTCAAGCATCAACCACGCCCCTGGAAGCATCGTCCGATTTCA
AAGAAAGAAATAAACAAAACAGGAATTATGGAAAAAAATTGATTAACTCT
CTGTAAGCAATACTTCATAACATTTCATCGTTTATTATCATTTATAATTT
TTACCTTAAAAATCATTTAGAACTATTATTTACAGTGTTTTGTGGTTAAT
CAAAAATATACATAAAACAAATTTTTAGTCTATCTATCTATCAAGACTAA
TTTTACTAATGAAAAAGCTTTCTATGTTGTGTAAATATTATTTCAAAAAT
CATTGGCACTATTTCGTACTATTCAAAAACTGGTCTTTAAGCACTCTTCT
CAAAAGCTTGCCGGCAGCCGATTTCGGTAATTGTTCGATAAATTCAACAC
CTCCTCTAAGTTTCTTATGATCTGAAAGTTTGTCAGCCACGTAATCTTCA
ACGTCTTTTGTCGTAAGGGTTGAATCAGGTCGCTTAACGACGTACGCGCG
TGGCAGTTCGCCCGTGCGGTCACACGGCACGCCGATGACACAAGCATCCG
TTATTTGATCATGACCGAGGAGAAGGTCTTCAAGTTCAGCCGGTGCCACC
TGAAGAAATAAAATTCAACTCAAGAAGCGATGTTTCTAATAAAAAAAAAC
TCGATGCTTTTAAAAATATGTCTTACGAGACATGCTAAAAGCATATGTTA
TCATTTGAAGCCATTTTTCAAAGTTTAAGATTTAAAAACAGTCAAGAGAT
ATATTTCG Coding sequence (CDS) from alignment at scaffold_330:241325..242782- >TCONS_00059724 ID=TCONS_00059724|Name=TCONS_00059724|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_330:241325..242782- (Clytia hemisphaerica)
GACACGATCTCGTTGCTACCAGAAATTTGCAACATTTGTAGCAAAGCAAA
GTCAGTATGTCCATCAAACCCATCAACGTCCTCCTCCTCATCCTCAAGCA
CGTGGTCAAGCATCAACCACGCCCCTGGAAGCATCGTCCGATTTCAAAGA
AAGAAATAATCGAAATCTTTAAAGCTCCGTGCATCTAAAGACGTCATAAT
GAATACTTGGAAAACCTACTTCATGGTTTTATTTCTCGCTTTGATTGGTG
GAGCATTTAGCATGAGCACAGGGGGAAATGGAATTTGGGAAGGTGGTAAA
AAGAAACCCAACTTGAAACAGGACACGATCTCGTTGCTACCAGAAATTTG
CAACATTTGTAGCAAAGCAAAGTCAGTATGTCCATCAAACCCATCAACGT
CCTCCTCCTCATCCTCAAGCACGTGGTCAAGCATCAACCACGCCCCTGGA
AGCATCGTCCGATTTCAAAGAAAGAAATAATCGAAATCTTTAAAGCTCCG
TGCATCTAAAGACGTCATAATGAATACTTGGAAAACCTACTTCATGGTTT
TATTTCTCGCTTTGATTGGTGGAGCATTTAGCATGAGCACAGGGGGAAAT
GGAATTTGGGAAGGTGGTAAAAAGAAACCCAACTTGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059724-exon-scaffold_330-1575043694:242620..242782 | TCONS_00059724-exon-scaffold_330-1575043694:242620..242782 | Clytia hemisphaerica | exon |
| TCONS_00059724-exon-scaffold_330-1575043694:241325..242178 | TCONS_00059724-exon-scaffold_330-1575043694:241325..242178 | Clytia hemisphaerica | exon |
| TCONS_00059724-exon-scaffold_330-1510915933:242620..242782 | TCONS_00059724-exon-scaffold_330-1510915933:242620..242782 | Clytia hemisphaerica | exon |
| TCONS_00059724-exon-scaffold_330-1510915933:241325..242178 | TCONS_00059724-exon-scaffold_330-1510915933:241325..242178 | Clytia hemisphaerica | exon |
| TCONS_00059724-exon-scaffold_330-1491911889:242620..242782 | TCONS_00059724-exon-scaffold_330-1491911889:242620..242782 | Clytia hemisphaerica | exon |
| TCONS_00059724-exon-scaffold_330-1491911889:241325..242178 | TCONS_00059724-exon-scaffold_330-1491911889:241325..242178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_330 | supercontig | scaffold_330:241325..242782 - |
Blast
The following BLAST results are available for this feature:
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