TCONS_00059706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059706
Unique NameTCONS_00059706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059706 ID=TCONS_00059706|Name=TCONS_00059706|organism=Clytia hemisphaerica|type=transcript|length=696bp
CACtgaaaaagtgcatttttgaaaaatactcaaattctttttgaaattac
agaaaaaaagaagaaaaaatcacaaaaaaaattcataacagCGAAAAGTC
ttcttcaaaatattaaaagtttGCAGAATTTTAGATAAGCGCGTGAAACC
TGAAAATGTCAATATTCTAAAgtgtaaattgatttttaaagtaATTTATA
TTTATACGTTACGCATAAGCTTTTGTTTTGCAGGAAGGCAAGGAGATAAT
GATCTACCATCGCGGTCACCAACAAGCTCAAGTAAGGTTGTCATTTTGTA
TAGCCACTGTCGATtgttttttaagagttttatcttaatattttaaggaa
aaatatgAGCCTAATCAAGAAATCTGATAGACCAGGCAGGATAAACATGT
TTGTTATTTCAGAATGAAATTTTAATCGTACGTCAATTAAACGAGCTTGG
GCAGTTGTCTTCAAAATTCTAAATAGCAAACTGCATAAAATTATATACTT
GAGAAATTTTGATATGATTTGAGCAGTAAAATTCATTTGGTATAGGTTTG
CAGTCTTCAAAATTATGACCCATGCAGCTTGAATTAAAAGTCAACAAATT
GAAGAgtcgtttttgttgttttaaggTTGGACAATGGATTTGGGATCACG
TGACCTGTGATTATTCCAAACGAACTTCTCCTGTACTCAAGTGATT
Run BLAST on NCBI

transcript from alignment at scaffold_330:428465..429160+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059706 ID=TCONS_00059706|Name=TCONS_00059706|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at scaffold_330:428465..429160+ (Clytia hemisphaerica)
CACtgaaaaagtgcatttttgaaaaatactcaaattctttttgaaattac
agaaaaaaagaagaaaaaatcacaaaaaaaattcataacagCGAAAAGTC
ttcttcaaaatattaaaagtttGCAGAATTTTAGATAAGCGCGTGAAACC
TGAAAATGTCAATATTCTAAAgtgtaaattgatttttaaagtaATTTATA
TTTATACGTTACGCATAAGCTTTTGTTTTGCAGGAAGGCAAGGAGATAAT
GATCTACCATCGCGGTCACCAACAAGCTCAAGTAAGGTTGTCATTTTGTA
TAGCCACTGTCGATtgttttttaagagttttatcttaatattttaaggaa
aaatatgAGCCTAATCAAGAAATCTGATAGACCAGGCAGGATAAACATGT
TTGTTATTTCAGAATGAAATTTTAATCGTACGTCAATTAAACGAGCTTGG
GCAGTTGTCTTCAAAATTCTAAATAGCAAACTGCATAAAATTATATACTT
GAGAAATTTTGATATGATTTGAGCAGTAAAATTCATTTGGTATAGGTTTG
CAGTCTTCAAAATTATGACCCATGCAGCTTGAATTAAAAGTCAACAAATT
GAAGAgtcgtttttgttgttttaaggTTGGACAATGGATTTGGGATCACG
TGACCTGTGATTATTCCAAACGAACTTCTCCTGTACTCAAGTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037559XLOC_037559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059706-exon-scaffold_330-1491911889:428465..429160TCONS_00059706-exon-scaffold_330-1491911889:428465..429160Clytia hemisphaericaexon
TCONS_00059706-exon-scaffold_330-1510915933:428465..429160TCONS_00059706-exon-scaffold_330-1510915933:428465..429160Clytia hemisphaericaexon
TCONS_00059706-exon-scaffold_330-1575043694:428465..429160TCONS_00059706-exon-scaffold_330-1575043694:428465..429160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:428465..429160 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.939543	0.672867	0.547886	0.813075	0	0	0	0.263049	0.474931	0	0.337213	0.564333	0.131702	0.672067	0.492144	0.368634	0.220262	0.842396	0.117854	0.727172	0.950423	0.412269	0	0.765693	0.23569	0	0.526062	0.551073	1.01333	0.627056
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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