TCONS_00059691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059691
Unique NameTCONS_00059691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059691 ID=TCONS_00059691|Name=TCONS_00059691|organism=Clytia hemisphaerica|type=transcript|length=1791bp
CTAAAATCGAAGGGGAGCAGCCTCCAAAGTATCAACATTACGGAGTGCTT
TTGCAGAGAGGAAAGGCTTGTGTTGGGTtactttcattttgaaatacatt
taatttttcaatagatttcatttgataaaacttaaaaatgagtGAATCCA
AGCCAGACATTTCAGAAGTTGCTGCCTTCGACTCATCCAAGTTAAAACAT
GTCGAAACAGAGGAGAAAAATACACTTCCATCGAGTGATTTGATTCAAGA
AGAAGCAGTTGAATCCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACC
TGAAATCAGTTGAAACTGTTGAGAAGAATACTCTCCCAACTGCTGCAACC
TTGAAAGAAGAAACTCGACCAGAAAGTTTGCCAGATGTTTCAGGTGTTGC
TGAATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGAGGAAAAATCTG
TTCTCCCCACTGCTGATGTTATTAAGGAGGAATCTGTTGAATCAAGATCT
GAGGTTAAAGCGTTCGataaatcaaaactcaaatcgGTTGAAACAGAGGA
AAAGAACACTTTACCAACTGCTGCAACTCTAAAGGAGGAAACTCGACCAG
AGGTGTTACCAGACGTGTCGGGCGTTGCTGGATTTGATCCATCCAAATTA
AAACATGTAGAAACAGAGGAAAAAACTGTTTTACCCACCGCAGAAGTGAT
TAAAGAAGAATCGGTTGAATCTCGGTCAGAAGTTAAGTCTTTTGATAAAT
CTAAACTTAAATCTGTAGAAACAGAGGAAAAGAACACTTTGCCAACTGCT
GCCACCCTCAAAGAAGAAACGCGACCAGAAAGCTTGCCTGATGTTTCAGC
CGTTGCTGGATTTGATGCCTCTAAATTAAAGCATGTAGAAACAGAGGAAA
AAACTGTTCTCCCCACCGCTGATGTCATTAAAGAGGAAGCGGTTGAATCA
AGATCTGAGGTTAAAGcgtttgataaatcaaaacttaaATCTGTTGAAAC
AGAGGAAAAAAACACTTTGCCAACTGCTGCAACATTAAAGGAGGAAACTC
GTCCAGAGGTGTTACCAGACGTGTCAGCTGTTGCAGGATTTGATGCCTCC
AAATTAAAGCATGTAGAAACAGAGGAAAAAACTGTTTTACCCACCGCAGA
TGTAATAAAGGAAGAGTCGGTCGAATCTCGATCAGAAGTCAAATCTTTTG
ATAAATCTAAACTTAAATCTGTTGATACAGAGGAAAAGAACACTTTACCA
ACTGCTGCAACCTTAAAAGAAGAAACTCGTCCAGAGGTGCTGCCAGATGT
TTCTGGAGTTGCAGGATTTGATGCTGCTAAATTAAAACATGtagaaacag
aagaaaaaaCCGTTTTACCCACCGCAGAAGTCATTAAAGAAGAAGCAGTC
GAATCACGATCTGAGGTTAAAGCTTTCGATAAATCAAAACTTAAATCCGT
TGATACAGAAGAAAAGAATACTTTACCAACTGCGGCCACTCTCAAAGAGG
AAACTCGCCCAGAGGTCCTTCCAGATGTTTCAGCTGTTAAAGATTTCGAC
AAGGGTCAATTGAAAGAATCAAAGACCGAAGAAAAGGCAGTATTACCAAC
CAAAGAAGTCATCGATGAAGAAAAACGTGAATCGAGGGCGGAAGTCAAAG
CTTTTGATAAATCTAACCTGAAAAAAGTAGAAACTGTCGAGAAGAATTCA
CCACCAACTGCTGAGGGCGGTGTTACCCAGTATGTCTTGGCCGTTGGCTT
TGCTTTTGTTGCTTGGGTCTATTTCCAATATTTTCGATAAA
Run BLAST on NCBI

transcript from alignment at scaffold_330:309146..314718+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059691 ID=TCONS_00059691|Name=TCONS_00059691|organism=Clytia hemisphaerica|type=transcript|length=5573bp|location=Sequence derived from alignment at scaffold_330:309146..314718+ (Clytia hemisphaerica)
CTAAAATCGAAGGGGAGCAGCCTCCAAAGTATCAACATTACGGAGTGCTT
TTGCAGAGAGGAAAGGCTTGTGTTGGGTtactttcattttgaaatacatt
taatttttcaatagatttcatttgataaaacttaaaaatgagtGAATCCA
AGCCAGACATTTCAGAAGTTGCTGCCTTCGACTCATCCAAGTTAAAACAT
GTCGAAACAGAGGAGAAAAATACACTTCCATCGAGTGATTGTAAGTATAA
AACTTGTCTCCTGCTCTTTTTGCTGTACAGCTAGGCTCCTCATTTTAAAC
AAGAGGTGTATTTTTGGTCCGTCTTGATGTCAATTTATCTACTTCctctt
gtttttttcttttgtaaaccTGCTGAAATTCAGGAGATTAATATTAGATA
TCATGGAATAGAGATAAAATCTTTCAGTTGGATTATCCTTCTTGAAATAG
CTACAACATGCTAGGTGTAATATACAGGACAGTTGTATATATTTGTATAT
GCTACCCACTTtttttcaactaaaatggcTGTATGAGTATTTTTACTTTC
TCATGGCATGACTCTGCATGAGCAGCCGTcagcagatttttttaaatatc
tgttattttttttcaggagagtaaattttttatggataaatctaggagag
acttttcttcaaaacacccatgtaaaatccaggggtcgccttaaagacat
ctgttcttaaaatccatgagcacattttaaggaaaaacacatacacgtct
tctttttttttaagaaactagttttaccaagcatcctcaatgtttcttaa
gaaatcggccttttgagccgatgtttcttacatgtttctaaactttttga
cataattagccttgattggaaggttcttataaaaaaccgaattaaaaaat
gttattttctcattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagatgccagatttttt
ttccagggagcttcataattttcttaaaaggtctcattttctaggagcat
tttaattttcttagagaatagctgttatatttttccaggagcgtAATATT
TCTGGTGCTAATAAATTAGGGTCAGAATAAGTGCAGGGGGTGGGTTGGTT
GGAAAATTCTTCAGATTTTAATAAATAACTTTACTAGGGAAGTTGGAAAT
TATTGCACCTCTAAATACctccaaaataaggtaattatagaCTACAGATA
AAGCCTGTAAAGGCTTGATAtttatttagagcaaaataagacATCTATCA
TGATCATCATGATATCGCGTTTAGCAAAAGGTCAATGATGGTAGCCAATT
TGTTTTACATGTGCACTACTTTGTTCTTTGTGTGCACAGACTTGTtagaa
acaagaagaaaaatcaattgGAAAATCCTCCAATCCCCTAACAGTACTAC
TAGTACTATACATTTGTGTCATTCCCTAGATCATCAGCTATACCTCGAAA
CTACCTTTTTCCAGCGGTTTTagcaaaaataatatttaaaaattgttgGC
AACTTCTTAGAGTATGTCAAGAGTTAGCGAAAGTGGTAAATGTTAATATC
CTCACAAAATAATCTAGACAACATAATCCTTTTAaggggccccccagcgg
tttgcgtgaatgcgtgaatgggcattttcagttgcgtgaatgcgtgaaaa
ttgggaaaaaaatgtgaatttttccttttttccaccgatcaatgtgcagt
tttcccgattttccaatgtttccccgaatttttccgaaaattttccaatt
tcctgAAAAAACAGGTTATTGCCTGAAAgttgaggaaaatttgcgtgaat
gcgtgaatttcgaaaaaaaattgcgtgattgtgtgAATTGAGGGtctgct
ggggggggggggctNAAATTGCGTGATCGTGTGAATTGAGGGTCTGCTGT
GGGGGGGGGCCTCTTTTAATCCCCACCCAAAATGCTTGAACAGGAGACTT
GCATAGCTTTAGTAGCTTAACCCGTCCTACAATGGACATCCTACAAGGGT
TATCAAACCCTCTGGTGTCAAATTTTAAATATCCTGAAACCCTCCCTTGA
AACTCCTATCCTATAGGGGTTGAAGCTATGTTATATAACCAATAATAAAA
GTTTGAAGTATTTTCAATGTGTATTTCATTCTCTTTTAGTGATTCAAGAA
GAAGCAGTTGAATCCAGGTCAGAAGTCAAAGTCTTTGACAAATCTAACCT
GAAATCAGTTGAAACCGTTGAGAAAAACACTCTCCCAACTGCTGCAACCT
TAAAAGAAGAAACTCGACCAGAGGTCTTGCCTGATGTTTCTGGAGTTGCA
GAATTTGATGCTTCTAAATTGAAACATGTTGAAACAGAAGAAAAAACCGT
TTTACCCACTTCAGATGTTATTCAAGAAGAAGCAGTTGAATCACGTGCAG
AGGTCAAAGTCTTTGACAAATCTAACCTGAAATCAGTTGAAACTGTTGAG
AAGAATACTCTCCCAACTGCTGCAACCTTGAAAGAAGAAACTCGACCAGA
AAGTTTGCCAGATGTTTCAGGTGTTGCTGAATTTGATGCCTCCAAATTAA
AGCATGTAGAAACAGAGGAAAAATCTGTTCTCCCCACTGCTGATGTTATT
AAGGAGGAATCTGTTGAATCAAGATCTGAGGTTAAAGCGTTCGataaatc
aaaactcaaatcgGTTGAAACAGAGGAAAAGAACACTTTACCAACTGCTG
CAACTCTAAAGGAGGAAACTCGACCAGAGGTGTTACCAGACGTGTCGGGC
GTTGCTGGATTTGATCCATCCAAATTAAAACATGTAGAAACAGAGGAAAA
AACTGTTTTACCCACCGCAGAAGTGATTAAAGAAGAATCGGTTGAATCTC
GGTCAGAAGTTAAGTCTTTTGATAAATCTAAACTTAAATCTGTAGAAACA
GAGGAAAAGAACACTTTGCCAACTGCTGCCACCCTCAAAGAAGAAACGCG
ACCAGAAAGCTTGCCTGATGTTTCAGCCGTTGCTGGATTTGATGCCTCTA
AATTAAAGCATGTAGAAACAGAGGAAAAAACTGTTCTCCCCACCGCTGAT
GTCATTAAAGAGGAAGCGGTTGAATCAAGATCTGAGGTTAAAGcgtttga
taaatcaaaacttaaATCTGTTGAAACAGAGGAAAAAAACACTTTGCCAA
CTGCTGCAACATTAAAGGAGGAAACTCGTCCAGAGGTGTTACCAGACGTG
TCAGCTGTTGCAGGATTTGATGCCTCCAAATTAAAGCATGTAGAAACAGA
GGAAAAAACTGTTTTACCCACCGCAGATGTAATAAAGGAAGAGTCGGTCG
AATCTCGATCAGAAGTCAAATCTTTTGATAAATCTAAACTTAAATCTGTT
GATACAGAGGAAAAGAACACTTTACCAACTGCTGCAACCTTAAAAGAAGA
AACTCGTCCAGAGGTGCTGCCAGATGTTTCTGGAGTTGCAGGATTTGATG
CTGCTAAATTAAAACATGtagaaacagaagaaaaaaCCGTTTTACCCACC
GCAGAAGTCATTAAAGAAGAAGCAGTCGAATCACGATCTGAGGTTAAAGC
TTTCGATAAATCAAAACTTAAATCCGTTGATACAGAAGAAAAGAATACTT
TACCAACTGCGGCCACTCTCAAAGAGGAAACTCGCCCAGAGGTCCTTCCA
GATGTTTCAGCTGTTAAAGATTTCGACAAGGGTCAATTGAAAGAATCAAA
GACCGAAGAAAAGGCAGTATTACCAACCAAAGAAGGTGAGTTCACAATTA
AActgtttatttttataatttaacaTCTTCAGGGCTAGAAATAACTGTCg
gacccaaatagcttcatgtccgacccaaaaatcgtaattttcaagctaaa
gcaactctgatcggacattttgtccgacccacttgaaattgTTATTTCGA
GCCATGCAGTCTGTTTCTCAATGCTGGACTGCAGAGTAATTTTTAAGGTT
TATAAAAATCAGTTTGGTGCTAGAATGCTAAAACAATAGTAATACAGAAT
GTAAAACATCTTCATATTTTGCTTTTTAGTCATCGATGAAGAAAAACGTG
AATCGAGGGCGGAAGTCAAAGCTTTTGATAAATCTAACCTGAAAAAAGTA
GAAACTGTCGAGAAGAATTCACCACCAACTGCTGAGGGTAAAACTAGTGA
AACTGTAcaatctgaaaataagaaaccTGAAGTATCTTCTGAGGCAAGCA
GCCCTTCAGAACCAACACCCACTACTACCAATGAgagtgaaaataaaaag
aaaggttgTACTATCCTATAACAAACACACACCAACACGTCATTCATAAC
GTCAAATCTTAAGACGTAAGTCCTTCCTACTGCTATACTGTTTCTCACTG
CACACACTGACTCCTTTTGCACCACACATACATTACAACACAAAACACAC
CCCCTATTTATGAATACCACAATGTTTTTCATGCTTGAACTACATTGAGT
TTCATGCTCTTTTTTGAATGCTTAGAATGTCATTTTCATcggaattttct
ttgaattgacTTGCACTTTAAACACATTTATGATTTGAAGCTTGTCTCTA
CACTTACTAATacctttttctcatattttgaCAGTCTAAGCATGCCAGAG
CGAGgggaatatttttaaatatttcttatttcaattttgttatgttttca
caacACTGACTGATAAAGACCCAAAATGTGTAATTGATTGATGCATGAGA
TCATTTCTTGATTACCACATTCAAACACGGGCCTAGAACATTTCTTCCTT
CACTTTGCATTCAGATTCGAGTTTCAATTATTGTATAATCAACATACATA
TTTAAAAATTAACATACCAAACAACATAATAAAAAGAGGAAATCTGAATC
CATTCATGATCAATTTAAAACGAAACAATCATTTAGATGTAGATACGTTC
AATAGATTAAGCATAAACACTAGAAATATTTTAACCTAAATTCAAAACTA
GAGCACGAAAtcatttgatatgaaatttctGTATGACGAATCTCCAAGCC
ATGATGTTTGTAAGTTATGATTTACTTTTCATTTCTCCTCACCATTCAAT
GCAAGCAACAAAATTGAGAATCATTCAAAAAGCAGTAGGAAAGGCTAACC
ACTACTCAaacctttcaaaacaaaatcgaaTAGCACCGTAACTTTTGACA
ACCcactttttatttattatatcaaaatagaTAGATTTACCCTGGAGTAC
ATTCCAGAGTGGCCTGCCTCATGCCAATTTTGCCTCTCTCTCATTCAGGC
GGTGTTACCCAGTATGTCTTGGCCGTTGGCTTTGCTTTTGTTGCTTGGGT
CTATTTCCAATATTTTCGATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037556XLOC_037556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059691-exon-scaffold_330-1491911889:309146..309385TCONS_00059691-exon-scaffold_330-1491911889:309146..309385Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1510915933:309146..309385TCONS_00059691-exon-scaffold_330-1510915933:309146..309385Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1575043694:309146..309385TCONS_00059691-exon-scaffold_330-1575043694:309146..309385Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1491911889:311535..311569TCONS_00059691-exon-scaffold_330-1491911889:311535..311569Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1510915933:311535..311569TCONS_00059691-exon-scaffold_330-1510915933:311535..311569Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1575043694:311535..311569TCONS_00059691-exon-scaffold_330-1575043694:311535..311569Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1491911889:311798..313130TCONS_00059691-exon-scaffold_330-1491911889:311798..313130Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1510915933:311798..313130TCONS_00059691-exon-scaffold_330-1510915933:311798..313130Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1575043694:311798..313130TCONS_00059691-exon-scaffold_330-1575043694:311798..313130Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1491911889:313425..313532TCONS_00059691-exon-scaffold_330-1491911889:313425..313532Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1510915933:313425..313532TCONS_00059691-exon-scaffold_330-1510915933:313425..313532Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1575043694:313425..313532TCONS_00059691-exon-scaffold_330-1575043694:313425..313532Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1491911889:314644..314718TCONS_00059691-exon-scaffold_330-1491911889:314644..314718Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1510915933:314644..314718TCONS_00059691-exon-scaffold_330-1510915933:314644..314718Clytia hemisphaericaexon
TCONS_00059691-exon-scaffold_330-1575043694:314644..314718TCONS_00059691-exon-scaffold_330-1575043694:314644..314718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:309146..314718 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.8101	63.7653	20.2796	11.1279	12.5375	22.1769	31.2167	52.7044	8.32188	7.74754	3.79635	12.7029	2.17048	15.1078	30.7222	22.6808	65.145	45.7563	35.403	37.9168	54.8475	72.9008	104.422	101.194	18.0497	37.4352	115.375	131.901	246.409	244.847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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