TCONS_00059628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059628
Unique NameTCONS_00059628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059628 ID=TCONS_00059628|Name=TCONS_00059628|organism=Clytia hemisphaerica|type=transcript|length=277bp
AATGACTATGTCCTGAGGTGTTGACTCTCTGAGTGCTACATGTCAACTGA
ACTCTGAAGAAAAGTGGACAAGCTGCCATATTTATAGAAAATCTAAACCA
AGTTGGCCATAAAtactaaaattatgaaaaatagctAGGAAATGTTAATA
TGAACCAAGTCGGCTATCAAACTAAAATTGATATAAACTAGAAACTAcaa
aataaattatcataaattatgcagaaaaCCTGGTTTTCACTGAATATACT
GAAAAATGCACTTAAAAGAAACCAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_329:365357..365633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059628 ID=TCONS_00059628|Name=TCONS_00059628|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at scaffold_329:365357..365633 (Clytia hemisphaerica)
TTCTGGTTTCTTTTAAGTGCATTTTTCAGTATATTCAGTGAAAACCAGGt
tttctgcataatttatgataatttattttgTAGTTTCTAGTTTATATCAA
TTTTAGTTTGATAGCCGACTTGGTTCATATTAACATTTCCTagctatttt
tcataattttagtaTTTATGGCCAACTTGGTTTAGATTTTCTATAAATAT
GGCAGCTTGTCCACTTTTCTTCAGAGTTCAGTTGACATGTAGCACTCAGA
GAGTCAACACCTCAGGACATAGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037508XLOC_037508Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059628-exon-scaffold_329-1491911889:365357..365633TCONS_00059628-exon-scaffold_329-1491911889:365357..365633Clytia hemisphaericaexon
TCONS_00059628-exon-scaffold_329-1510915933:365357..365633TCONS_00059628-exon-scaffold_329-1510915933:365357..365633Clytia hemisphaericaexon
TCONS_00059628-exon-scaffold_329-1575043694:365357..365633TCONS_00059628-exon-scaffold_329-1575043694:365357..365633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:365357..365633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51444	1.00332	1.16495	1.70958	0.693751	1.09642	0.661394	0.619189	3.46807	1.07394	2.08479	2.05569	4.78993	3.55314	7.59502	0.313485	0	1.58332	4.92175	10.3005	0.49739	2.18348	1.17969	3.7538	0	0.492943	1.4108	0	1.71297	0.581747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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