TCONS_00059041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059041
Unique NameTCONS_00059041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059041 ID=TCONS_00059041|Name=TCONS_00059041|organism=Clytia hemisphaerica|type=transcript|length=2076bp
ATCTAAATGAGCATCGAGTTGTACGAATGCCAATTTTATTGAGTTTTAAA
TCTCTCAAGTTTGAATGAAATCCGTTAGGCAAATAGCATAGGCATTTGTA
TGGGCTGTGTTGTAATCTTTGATCAATTGACTGTAGCACCATGATAGATG
TTTTAAAGgaTGCTGGTATTTATGTTGGGTTTGCGAACCTTCCAAATCAA
GTCCATCGGAAATCAGTTAAGCGTGGTTTTGAGTTTACCCTTATGGTTGT
CGGAGAATCTGGCCTtgGTAAATCGACACTGGTAGACAGTTTATTCTTAA
CATCATTATATTCTGAGCGTGAAACACTAACGGCCGTCAATCGAATCAAA
AGAACCGTCTCCGTCTCACAATCANAACACTAACGGCCGTCAATCGAATC
AAAAGAACAGTCTCCGTGTCACAATCCACCGTCGAAATCGAAGAAAAAGG
CGTCAAACTGAAGCTGACGGTAGTTGATACTCCTGGATTTGGTGACTCGA
TCGATAATAGCGACAGTTGGTCTCCGATAGTCAGTTATATCGATGAACAA
TACGAAGCATATTTACGAGACGAATCGGGTTTAAATCGACGAAACATCAT
CGATAATCGAGTACATTGTTGTCTATATTTCATCAATCCATGCGGTCAtg
gCCTCAAACCACAAGATGTGGCCGTTATGAAATGTTTACATGATAAAGTC
AACATCGTTCCCGTCATTGCCAAAGCTGATACATTAACCAAGAAAGAAGT
CAAAGAACTTAAACAGAGGATTCTTagagaaatttatgaaaatcaaattc
aaatttatcAATTCCCTGAGGcggatgaagaagaagatgatgaAGAATTT
ATAGCCGTTAATAAAGAATTAAAAaaTAGCGTACCATTCGCTGTAGTTGG
TAGCAATACAGTTTACGAAGTGAATGGTAAAAAAGTCCGTGGAAGAATCT
ATCCATGGGGCGTTGTTGATATCGAAAATCCAGCACATTGTGACTTCACC
ATGTTGAGGAATATGTTAATCAGGACGCACATGCAAGATTTGAAAGACGT
CACACAAGACACACATTACGAAAATTACAGAGCGAAGAAATTGGCTTCAG
GAGAACCACTCGAAGTATCAGAAAAtGGTGGTGGTGGTCGCGCCAGTCAA
GAACTCGACAGTCGAGATGCACTTCTCATGGAAAAAGAGGCTGAAttgaG
ACGTATGCAAGAAATGATCGCCAAAATGCAAGCTTCTATGCTACAACAGC
AACAAAACGTTTCCTAGACTAGTGGCTAATCAGCTATACAATAAAGCTCA
ATAAAATCACGGTATCGTATCATATTGGAGTACGTACTTGGACTATGGCA
AAATTTGAAGGGTTAATACGGAAGATACCAATATCATACGTCGAAGTTTT
TTACAGGGAAAAACTGGTAATACATCATTGGGATATGTAATTTTAGAAAT
GACTTTCAAAAATCAGTAATTATTATCTCACAGCTTGCATTCAGCGCTGT
TCCAACGTCTATGTAACGTTTTACTGACTTTAATATAACGCTCAAAACAT
TCTTCTCAGATGTTAGGAATGAGAGGTAAAACCTAGAGTTGGCTTGAATG
TAATGACGATTTCATTAGGGATAGCAgactattttcatttttctgtctga
ttaagaacatggtctaaatacATACTAAGTTTATGAACATACTGATCAAA
TCTTGATCAGGGCTTTTTACCCAAATCTAATAAAGTAATCTCTTATACGG
AATTACCGGAATCTGCTGCCGATTtcgaattttaatatttttatctttct
tcttttatgaactttttttctttttttcgcgAACTTTTTCAGTCCCTAAG
CCGTAAAAGATTTCATAGATTGTGTACGAAATATTATTTGTATAGAACCC
TCATCATcaattttagaaagattttattttacGTCTTTCTTCTTATTTTA
ATCCTCTTTTATCCTTTGtcaattttaaagcaaaaaactttgtaaatttt
gttttttacttttactaTTATAAATAATCGAAATattgttgaaaaatttt
aacatttcaaaaaaagtgaTTCACTT
Run BLAST on NCBI

transcript from alignment at scaffold_316:46232..58823+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059041 ID=TCONS_00059041|Name=TCONS_00059041|organism=Clytia hemisphaerica|type=transcript|length=12592bp|location=Sequence derived from alignment at scaffold_316:46232..58823+ (Clytia hemisphaerica)
ATCTAAATGAGCATCGAGTTGTACGAATGCCAATTTTATTGAGTTTTAAA
TCTCTCAAGTTTGAATGAAATCCGTTAGGCAAATAGCATAGGCATTTGTA
TGGGCTGTGTTGTAATCTTTGATCAATTGACTGTAGCACCATGATAGATG
TTTTAAAGGTATGTCCGCTATCGTCTCTTGAACGAAGCACAAATAACCGC
ATAATTGTCTTTTTTACGTCCTTCATTAATATTTGTTTCTAACCCTTGAA
ATTCTAGAAATAATTCCCTCCTTTACTTTTTCTATTCAACGTTTGGGCAA
TCCTGGGTTTGTGTTCATGTAGTGTTGTGTGACTCTCCGTAAACTTTGAC
TAATTTGGACTGCTTATTCACATAAGTCTTCTACTTCGTGCAAAATGTAC
ATCAGTTTGtataagttttcattttcattccaAGGTTTTTGAGAGGTATC
catcatagtgcggaaaggggcctggtccccccttcttggcatcccccctc
CCTGGCATCCCCCCtcccaatttttaaaaatgccaacccccctcccccaa
ggactttggacaaaaatagctaacaaatatatgtgaaatatctttagaga
gagaaagcgaGATAATGAACTTCCTCCTTCgttttgactcagactactct
aacagaaaacttcctttcataaagaccaaatttcataacggTGCTttaaa
ataatctacaatatataaaaaataccaaaaaaatcgtaaatacacacaat
taacaaaaatattcttaacttttttcgtttttatcagtttgagttattta
tatatcaatacttttctttttctaaaatgacagatattacatatcttcac
ttaTGTATgcccccttcttaaactatcCCCCTTCCTTGCTACCCCCaccc
tttttcatgaaaatttccgaaccccccccccttcttcattttttcggaAG
GTGTCACCCCCCTCCGAACTATGGGTATTTTTCCACGATAAACCTGTCTT
TTGAGTTTGCCGAAGTCTCTCTATTTTACAAACTCCCCCTCTCTAAAGGT
GCTTAAAAATTGTCATGTTGTGGCTTGTTGTTTAATTGGGTGTCAAGATA
CTGTTTGTTATCCTTTTTAAAATGGTAAACTGTATTTTCGGTAAGTGAAA
ACAATTACTAACAAAACAATTTCTTGCATCGTTCTTTGAAGTGCCGCAAC
CCCCTTTTTTGGGGGAGTTGAAATCTCATTTTACATGGGAGCTGAATACT
TCAGCTCAGTAGTcggcttcaattactcaaaagCTCATGAAGCTGAAAAA
CGTCGAGGATCGAAAGCCCTTTGGGGGGACTTGAAACTCAGAGATGAgtt
aatttttgcctgggacagGCCCAGGCTGAAGCTTTCTTCCATCTCATACG
TATTCATCTAATCTAGCCATAAGATCAATCTGCTTTAAAGGTTTAACCAC
TAACTAGTTTTCATCCTAAGCCCTCCGAAGGATTTCATCAAACTTTTGTA
ATATCTTTCATGTTTTGTTAGAAATTTGcatatatcaaaattttaagcaa
gattttatctttgatttatcatgttatacatgttttttttataagaacat
ccaaaattttgaagctgtcgtatgttcttaactttttagttttaagccta
gaaatgttattaacatgttcttattttgaccattttgtgaatattttttg
ccatttgcctaaagaaatagggtgtttttgagtccacaaagccttaaaat
gttcttaacttgttgttGACATTTTGGcaagcgaagccttatgttcttat
atagtttgttcttataaaaaactgtgTATCATATTCTTACGATGTTCGAT
AAACTGTTAATGATTTCACACAAAGAATTCTTCCCGGTGTTGCCGAAACT
CCTCTAAATAATAACTCTCCAGTCATAATAAACTAGTAGATAGTGACTCC
CAACCTCAAAATAAACTAGAAAATGAAAACTCCCTGCTAGAGTTACTATT
TCCTAGGAAATCTTGACATTCTTTGGTTTAAAATGACTTCCCTTTCATTA
TCTTtaacaaaattatttgaaaatttattcaGCTATCTCTCAAAAtaaac
ccccttctcacagatccggtagaattttttcagccagtggggataaaaac
aacggactgaaactcgatggggatcgatattcccatattcccatattttt
tatggttaGGGATTTtacttcttttgttttcaagtcagatgATTCAAGTA
TCATATTTTGAAGAgaagattgttttttttatttttttcagtgggaaaAA
AACTTGTTGGacaattttccactggggacgatattttggataATCTTTca
agtgggaaggggtcccagtgggtctgtgagaagggagtgtcaAATAAAAT
ATAGTCAGTATTCTAATCTATGCAAAGTAGAAATTCTTCGAGTACAAAAG
CTTCAAAATATTGATTCAGTCGTCACAGGTCAGAACCTTGACCCATCACT
GATTCTTTGTGAACTTTGTTTACATATGTTTGATAAATAAGGTTGATGCA
TTTCTCTGCATTCACTTTATAGTGCAGTGAATTTTCTGTAATTTATTGAG
TTGGAAATTAATTCTCTCTGGATTTCGGTCATTAAAGATCAGTTTATAAC
AGATTGATTTTGGGTCAACATTCcattttgaaatgtttaaaGCTTTGACA
AAGAAAGTTATGACGGTAGGCAAACTCTTTTCTTGCAAAtatgttctttt
tttataagaaccaggaAGTGTTTGCTAAGGCTCGGTTGTCCTTTTTTTGA
CacctttaagcctaaaattcaggttttttcttgcttgagaccCTATTATT
ACCGTTTTGACTCTAAATTTGCCTAAAATTCAGCCATTTCAGGCGGATGA
TTGTTCAtagattgttcttattttttgacatttttgaccctcattgttct
tataaaattgttctaattaaaaaaagtgtatgtaaaTCAAATTATTCTCC
ATCAAGGTCCATTCAGCCAAACcatatacacgtctttttttatataagga
acacgtttagaAGGAattcgaggctgaaatttgtccGGGAAATTAAGGAA
TTGCTAAGGAACTgttcaggctgagaataagagtTAGGGAACATTAAATT
TCAAACTTGAACTTGCACACATTTACAAAACcctaaaaacaaaaagtttt
aaaagaattaaTGAAACAGCATTCAATAAACGTCATTTTCTGTATTTTAG
CCAGTTGTTTAACTAAGCATCAAATCAGTCCAAACCTAATAAGGAACTTG
ATAAGAAACTTTGAGGTTGAAATTATCTGGAAAaaaaggaactccaggct
cggagCCAAGTTAATGCTTCTCATAACAAAAGACGTGTAAGTAACAATCT
GTCAATAATAGCAATGTTTTCAGCGGGCCCGAGCCGGACAACTGGACTCG
CGTCTTTGAAAGGGGTCTAATTCGGGCTCCTTTCTTTTCACATTCGAGGA
TTCTACGTTTGGCAATTAAGTAAAACTCAAATAGTGGTCTGCTTTTCAAG
CTAATACGACATATGTTTAGCTTGAGAAAGTCTCTTTTGTCTTATTTTTG
TCGTTAAATTTTTAtgcaaattatcaaaaaaagaagtctataaagagaat
tttttcataacttttttgttttcaaaaatatgaattCAAAGATACGATAT
ATgtgataaaaataagaaaacctcaattttcaaaaagatttgagaGAGAG
AAAACCAGAAAAATTTGTTACGCGCGCCGTCGAGTCATATAAAAACTAAT
CATTAACTGAGTATAACTTTCAGAAAGTTGAGATCTCTCGTGTAGATACA
agatagaaaaatttttaaggcgattttgagaaatattttgaattgaaaaa
aaatcaaaactcattGACTGACTCAGTGACAAACGATATAGCTgttatca
aacaaaaaaaatatgaacaaaTTAATTTTGCTTTGACTAGAGTGTCGAGT
AATATAGCAAAGAACTATTTTTTTATGTAAGAGCTTACGTCTGAGTAAAG
CGCTTACAACAATTTCATGGAGATACGAGCTACACAGTTAGATTGATAAA
CATTGTCGTATAAAAATACATCGGGGTTCAATTTATATTACTTTTAATTG
ATTTTACTCGTTGGACTTGTCGCACAAATTTTGTTGTAATTTTTGTGTGT
TTATCTGGAAGAATTTCGTTTCAAATCCCAAGATGAGTACTAAGGAGTTT
ATTGACTATACAAAGGTTAGGTCAAATTTGAATTATGGTCACTGCTATAA
ACTTACTTTATATGGGACTTTGAATTTTAAAcagttttgaagaaaatagt
gATTTAGTCagctttctctaattcgaatcgcTGTTATCCCATTCGTTCTg
ttattcgaactaaaatatctGAACTTTCAGTTGGAAAGTTTTATAAAATA
CTCCTCCTTGTAATTCGAaggttttttaaaaactttgtttATTGAAACTG
AGCTTTAAGCATCTTGGTCGAATCATCTAATAATGCAACGTTTAGTTAAA
TTTCCGTATCGTCGAAGAAACGTTTTCTGTCATATAGTATACGAAGGACG
CgtggttttatattttttatacctAGCTTTTGATTTATGACATGTACCTT
ATTAGTAACAGATAAAGTTTGAATCCCTTCGCTAATTATTTAGGGCGTTG
TACATGTAAGTCTGACATCGTCCATAGGAATTCGGTTAAAATTGTGTAAT
TAGTGAACCGTCACTAACTTGAACTTGTataattcaattcttttttttaa
ttcccGTATTAAGGGATGGTAATTATAGGGGtaataattcgaatctctct
gtaactCAGACTTTAATGTATTTGTAAACTAAgatcatgttcagacgtta
cggttccgttccgaaacgaaacgaaactGCTTTGCTATTATTGTtactta
ttattattattaaaaataattacagtccaggcacacgagggcctctaaac
cgatcttatacaaaaaatctttttaaagtaCAGTTTGTCATACTTTTTAC
AGTTTGCTATACTTTTTTCATTGTAGCGGAACTGTtctgttttcttgctc
cgaaacgtccATAAACTAGTATGAACACACtagatccgtaacgaaaatca
taccggagcgaagCGTGTATGTAACGTGTTAACATGGTCTaaattaaaca
tttatttttctcaacttcaggaTGCTGGTATTTATGTTGGGTTTGCGAAC
CTTCCAAATCAAGTCCATCGGAAATCAGTTAAGCGTGGTTTTGAGTTTAC
CCTTATGGTTGTCGGAGAATCTGGCCTtggtaagaaatttttttgctact
gCAACCTTTCGGTTCTATTTCGCCCAGTGAGACAAGATTAAGAGGGTTGT
GACCGGGATAGTACTTCCCTTTTTGTTGTCTGTCAAATTCCTGAAGTTCT
GTGGGTGAATTTTTAGTGAAACAATCActgtaaaaattcttttggACCAG
CAATTTAGAAAACTTCTTAAATTTGCCAACCCAACCCCTCCTGAtaactg
acctttatatatatatccctggacaaagctatatccgccatctttgatcg
gagttttttgaaagtggtaacCGCAAAGAAGCCATGGTAGTGTTAAAAAT
CTAACGtttaacggcgctacatcattgcAGGTATTTCATGTAAAAGTAAG
TCTAGCGCTCTCGAAgcattttcaccgctattgagtagtgctaccattag
agtaccactttcaaaataactttaatcaaagattttgtttggGCAGGATC
GAGAAACTTTGTTCTGGGATAAATAATGGTCAGTGCTCTCGATCCCCTAG
GCTGAAACATACAAAGCTAGTCGAGGACTGTAATAATCATAATTTGCATT
TAACTTATTCAGGTAAATCGACACTGGTAGACAGTTTATTCTTAACATCA
TTATATTCTGAGCGTGAAACACTAACGGCCGTCAATCGAATCAAAAGAAC
CGTCTCCGTCTCACAATCANAACACTAACGGCCGTCAATCGAATCAAAAG
AACAGTCTCCGTGTCACAATCCACCGTCGAAATCGAAGAAAAAGGCGTCA
AACTGAAGCTGACGGTAGTTGATACTCCTGGATTTGGTGACTCGATCGAT
AATAGCGACAGGTTGGTTTTGTCGTCATTTTATGTCGGTTTTGAttccaa
aaataactttttgaaaatgaggaTATCGGTTTCAGTATCCCAGTAGAAAT
TATCTTTTCCCAATATGTCtcttttcaaatcaatttgaGAAAGGTGGAGT
TACCATAGCTCGGGTTTTTTTCAATAACTCAACCAAATTGCTGGCATGGT
GAAATGTTTCTAAGAAATCCTTAATAACGAAAATTTGTATTCACCTCTTA
CAAACGATTTGAAATCCGTGTAAATCAACCTCATTCACTaagatggattt
tttttcaataagtcGAAATTTTCCTTATAACGAAATCCTATAATCTTtat
agtccttataaaaaagtcgTATTCaagatatgcaccattgcattacatca
cggacctaacagctgattggttataagtgacgtaaaaccCGTCAATACGC
CACTTGCGACCAATCAGCTGTTAGGGCCGTGATGCAATTATGCAATCATG
AATTCACCTCGTACAAACTTTAAAGTTCTTTTATGTTTGTCTAATAATTT
AATCATTTTCTCATCCTTGTAATTTCAGTTGGTCTCCGATAGTCAGTTAT
ATCGATGAACAATACGAAGCATATTTACGAGACGAATCGGGTTTAAATCG
ACGAAACATCATCGATAATCGAGTACATTGTTGTCTATATTTCATCAATC
CATGCGGTCAtgggtaagtttttttttaaatttttaatattctttGAAGC
ATTGTATCGCTTTGAGAAACgttggccgagtggttaaggcgtcaGCGACT
CAAACTAGGAattcgcggttcgaatcccactcttTCCAATGTTCCTTTCA
GCTCATAGATAGCCGACCCGACTGTCCGTGGACTCTGTGAGGGCAATCGA
AATACTATTTAAAAGTCCTAGGTTATTGGGCTATCCGCGTATAATGTCGA
ATCTATCTATCAACCTTTCATCAATGTAAAGAGGGAAATTTGACCATAGG
CAAGGCACAAAGTCGGTCGTCTAAATTAGCCCTTAGTAAAGGATAAAAGA
CAAATTATGAACCTTTTCCTGAGGCTGTCTTGGTTATACATGATGGTATT
TTGTTAATATATACCAAGTTAGCCGTAAGAGGGTCTCTGTTTTAAACTAT
TTGTTTATATGTGTTTTGAAAGGTACAAGATCTTTAATTGACGGAAATAA
CGTCAGAATTTCTGCGTATATAATGAGTTTGAAGTTTTTTAATTAACTTT
GGTTCGCATGTACTTTCATTAGGCCTTAAATTAGATTTTCTGTATGACCT
TAGCAGTTATGTCTCCTGACAATATAAGTTTTTAATAAACCGTATTATTT
GCAaaagaaaattgtattttttaccATAGCCTCAAACCACAAGATGTGGC
CGTTATGAAATGTTTACATGATAAAGTCAACATCGTTCCCGTCATTGCCA
AAGCTGATACATTAACCAAGAAAGAAGTCAAAGAACTTAAACAGAGGATT
CTTagagaaatttatgaaaatcaaattcaaatttatcAATTCCCTGAGGc
ggatgaagaagaagatgatgaAGAATTTATAGCCGTTAATAAAGAATTAA
AAGTAAGCCATCtctctgattggttgatattttgAATAACGCCTTTTGAT
TGGTCTGAAATGACGACAtaatttatttctcaactttccaAAATTATGAT
AAGTTCGGGTGATTTTGGGAATAAAAGCTCcttgttttcattgaaaaaaa
attcaaatagcCCCCACTACATTCacgctattttgaaatgttttcaatga
acctcgggacTATTAttcccaaatcaccctccaaTCCATGTTATCTCTAG
TGCTTATAGCCCAGGGGCACTCGATTCTATCGATGACTTAACCTTTTTGT
TAAcgcttttttcttttacagaaTAGCGTACCATTCGCTGTAGTTGGTAG
CAATACAGTTTACGAAGTGAATGGTAAAAAAGTCCGTGGAAGAATCTATC
CATGGGGCGTTGTTGATAGTAAGTCTTCTAGTTGTGTATCATCTTTTTTG
ATGAGATTTAGCATGGAACATTAAGcctttgaattctttttttcaagCAC
GACTCGATTTTTGAGCAAGATTTATACTGAATCTGACCATGTTTTTCAAT
TGTCAAATCCCAAGAAATTTTGGTTTGACAATGAATGAATCCAGCTTGCA
CACAACATTGCTTACGCGCTCATCTACTATTATTATGTATGTTATGGACA
ATAGATAGACGTTGAAATGACACCAAAAGCGCAAAAGTCGCAAAGGTTCG
GATAGCGCTGCGGTACaactactttttaaaaaaagacaaaacgaAACAGA
TACTTTTTTCACGAAAGACTTCTCGCAGAGCCTCTTTTAGTCGTCCTGCT
TGGCTCGTCACTCGAGTTTTAGCGGAAATATTTTCGTTTGATTGTTAAGG
GatcttttggattgttataggtaagtGCAGTACTCCTTCTTAAAAGAAAA
GGCACCGCTTGGATTAAAAGAACTTCTTTCTTCATTTTAGTCGAAAATCC
AGCACATTGTGACTTCACCATGTTGAGGAATATGTTAATCAGGTAAATGA
AGAACTTAATGAACAGACCTACCAATACGCTAAATAGCGCCAAAACGCTG
GTGTATGTCCTATCGATTAGCAGGGACTAGTGCgagcaaaatttttttat
actgaaaatcaaatttttcgcaCTATTAAgtagtggagtctccataactc
gaacacgcacggagaAAACAAATTTGTCCGATATAATGAAgtttcgaatt
atggagattggtttttaaggcattgttaactgaaatgaccagaaaacttg
ttcgagttaaggagacattcgggttatggaggttcgagttgtagagactc
cactgtacttTGTTCACGATATCCTCTAAATATCTAATATCTATCGGAAA
TATACGAACGAAATCTTACACCCTGATTGCTTCTAAAAATCGCAAAACTG
GGGTAAAACCTCCGATAAAGAACATCACGTAAGCTTATGCGTCAAGCCTA
CAAAAATCAAAGAAGCTTTAACTCGAAATATTTATtagatttaaaatttt
gctAGGAAATCTTTGTCTCTCCCTCTGTCTGAAATTGTTTGTCCATTGCT
TGTAAAAGTAAAAGTGTTGTAGTTTTCACTTTCTAACTTTTGATCACCCT
CATTTTTTAGGACGCACATGCAAGATTTGAAAGACGTCACACAAGACACA
CATTACGAAAATTACAGAGCGAAGAAATTGGCTTCAGGAGAACCACTCGA
AGTATCAGAAAAGTATGTCACCCTTATACactctttttattttataagaa
cgattttataagaacaattaggctcaaaattgccaaaaaaataagagcaa
tttaagaacaatgctgagcctgaaataaCTCCATTTGAAGCGATTGAGAG
GTCAAAGAAGTAAAAATTAGTCTAAAATACCtcaagaacaatttgaggct
aaGAACAATTTGATGCTCAAAGTGCCGAAAAAATAAGAACTCGAGTCAGA
AAaaactggttcttataaaaaaagggtgTACATAACTATGGTTACTACTG
TAACCACAAATttgcttcttcttttttttctttttctttttttttttttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTAGTACTG
TACATAAAAGATTAAAccattatatatttttctttttctcagtGGTGGTG
GTGGTCGCGCCAGTCAAGAACTCGACAGTCGAGATGCACTTCTCATGGAA
AAAGAGGCTGAAGTAAGTaccatttttaaagcatttcaCACAAGTAAATG
TGATCCATGTAATTCCTATagacaccctcttctcacagacccactgggac
cccttcccacaggaaaaattggccaaaatatcgtccccagtggaaaatta
tattataatcttgtccccgctgaaaataatcatatAAGCAAAtgctcact
gcaaaatattgtgctatttctttccattcccactgaattttatAGCTCGA
AAACAATGAAGTTCTAATCCCCAGCcttaaaaaatatgggaatatcaatc
cccgttGCGTTTTGGTCCACTATTTTCAACCCCTCTGGCTAAAAAAATCC
TAttgagtctgtgagaaggtggTGTCTATAGGATAGGCCTCAGTTATATT
TATTTcgacatacacgcttttttatttataagaacagttttaTAACTTGG
TTAGTTCTTATAAGAAACGTCAGTGTGCGTTGAAGTGTGTATTTTCTTGA
TCttcgttttcttcattttcttcatttcttcatTGTTGtaatttttactt
tgtttttgataatgcattatttttattcaaaaaaaattattttaattttt
tagttgaGACGTATGCAAGAAATGATCGCCAAAATGCAAGCTTCTATGCT
ACAACAGCAACAAAACGTTTCCTAGACTAGTGGCTAATCAGCTATACAAT
AAAGCTCAATAAAATCACGGTATCGTATCATATTGGAGTACGTACTTGGA
CTATGGCAAAATTTGAAGGGTTAATACGGAAGATACCAATATCATACGTC
GAAGTTTTTTACAGGGAAAAACTGGTAATACATCATTGGGATATGTAATT
TTAGAAATGACTTTCAAAAATCAGTAATTATTATCTCACAGCTTGCATTC
AGCGCTGTTCCAACGTCTATGTAACGTTTTACTGACTTTAATATAACGCT
CAAAACATTCTTCTCAGATGTTAGGAATGAGAGGTAAAACCTAGAGTTGG
CTTGAATGTAATGACGATTTCATTAGGGATAGCAgactattttcattttt
ctgtctgattaagaacatgttcagacgttacggttccgtatcgTTCCGAA
AAGAAACagaagtgtgaacgtcaaaattcgaaacgtcaaaaaagaagacg
ttacaaacactgacctttatataacctggaccaagcttctcaatctcAGC
CAAgctaaatctttgatcggagttttgtgaaaagtggtaccctaatggcg
gcactactcgatagcggtgtaaatgcatcgagagcgctaggtctactttt
cctcaaattcttttgatgtaGCGACGTTAGACGttgatttttaacattgc
aatggcttcttctcgggtaccaattccaaaaaaactccaatcaaagatgg
cagatattgcttggtccagggatatataaaggtcagtggttacaAAACAA
GACAGattgaaacggtttcgctccactattggaactgctccgttttcttg
ctccgaaacgttccgaacaCTCTCGATACGTAACGGAACCATACCGGAAc
gatacgaaaccgtaacgtctgaacatggtctaaatacATACTAAGTTTAT
GAACATACTGATCAAATCTTGATCAGGGCTTTTTACCCAAATCTAATAAA
GTAATCTCTTATACGGAATTACCGGAATCTGCTGCCGATTtcgaatttta
atatttttatctttcttcttttatgaactttttttctttttttcgcgAAC
TTTTTCAGTCCCTAAGCCGTAAAAGATTTCATAGATTGTGTACGAAATAT
TATTTGTATAGAACCCTCATCATcaattttagaaagattttattttacGT
CTTTCTTCTTATTTTAATCCTCTTTTATCCTTTGtcaattttaaagcaaa
aaactttgtaaattttgttttttacttttactaTTATAAATAATCGAAAT
attgttgaaaaattttaacatttcaaaaaaagtgaTTCACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037187XLOC_037187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059041-exon-scaffold_316-1491911889:46232..46389TCONS_00059041-exon-scaffold_316-1491911889:46232..46389Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:46232..46389TCONS_00059041-exon-scaffold_316-1510915933:46232..46389Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:46232..46389TCONS_00059041-exon-scaffold_316-1575043694:46232..46389Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:51452..51560TCONS_00059041-exon-scaffold_316-1491911889:51452..51560Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:51452..51560TCONS_00059041-exon-scaffold_316-1510915933:51452..51560Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:51452..51560TCONS_00059041-exon-scaffold_316-1575043694:51452..51560Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:52144..52392TCONS_00059041-exon-scaffold_316-1491911889:52144..52392Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:52144..52392TCONS_00059041-exon-scaffold_316-1510915933:52144..52392Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:52144..52392TCONS_00059041-exon-scaffold_316-1575043694:52144..52392Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:52960..53094TCONS_00059041-exon-scaffold_316-1491911889:52960..53094Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:52960..53094TCONS_00059041-exon-scaffold_316-1510915933:52960..53094Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:52960..53094TCONS_00059041-exon-scaffold_316-1575043694:52960..53094Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:53761..53983TCONS_00059041-exon-scaffold_316-1491911889:53761..53983Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:53761..53983TCONS_00059041-exon-scaffold_316-1510915933:53761..53983Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:53761..53983TCONS_00059041-exon-scaffold_316-1575043694:53761..53983Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:54303..54399TCONS_00059041-exon-scaffold_316-1491911889:54303..54399Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:54303..54399TCONS_00059041-exon-scaffold_316-1510915933:54303..54399Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:54303..54399TCONS_00059041-exon-scaffold_316-1575043694:54303..54399Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:54922..54973TCONS_00059041-exon-scaffold_316-1491911889:54922..54973Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:54922..54973TCONS_00059041-exon-scaffold_316-1510915933:54922..54973Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:54922..54973TCONS_00059041-exon-scaffold_316-1575043694:54922..54973Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:55592..55693TCONS_00059041-exon-scaffold_316-1491911889:55592..55693Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:55592..55693TCONS_00059041-exon-scaffold_316-1510915933:55592..55693Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:55592..55693TCONS_00059041-exon-scaffold_316-1575043694:55592..55693Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:56774..56843TCONS_00059041-exon-scaffold_316-1491911889:56774..56843Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:56774..56843TCONS_00059041-exon-scaffold_316-1510915933:56774..56843Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:56774..56843TCONS_00059041-exon-scaffold_316-1575043694:56774..56843Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:57435..57897TCONS_00059041-exon-scaffold_316-1491911889:57435..57897Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:57435..57897TCONS_00059041-exon-scaffold_316-1510915933:57435..57897Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:57435..57897TCONS_00059041-exon-scaffold_316-1575043694:57435..57897Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1491911889:58406..58823TCONS_00059041-exon-scaffold_316-1491911889:58406..58823Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1510915933:58406..58823TCONS_00059041-exon-scaffold_316-1510915933:58406..58823Clytia hemisphaericaexon
TCONS_00059041-exon-scaffold_316-1575043694:58406..58823TCONS_00059041-exon-scaffold_316-1575043694:58406..58823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:46232..58823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184897	0.473748	0	9.50421e-08	244.991	185.092	146.743	158.076	3.47975	7.45301	2.80727	4.19379	21.7548	21.0574	3.02415	6.89856	21.1206	13.6593	3.98058	1.14951	23.3388	22.8996	6.39613	3.92079	55.9851	55.2646	48.305	43.7535	14.8904	19.7244
Blast
[Close]
BLAST of TCONS_00059041 vs. Swiss-Prot (Human)
Match: SEPT2 (Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 2.113e-111
Identity = 174/280 (62.14%), Postives = 215/280 (76.79%), Query Frame = 2 
Query:  386 AVNRIKRTVSVSQSTVEIEEKGVKLKLTVVDTPGFGDSIDNSDSWSPIVSYIDEQYEAYLRDESGLNRRNIIDNRVHCCLYFINPCGHGLKPQDVAVMKCLHDKVNIVPVIAKADTLTKKEVKELKQRILREIYENQIQIYQFPXXXXXXXXXXFIAVNKELKNSVPFAVVGSNTVYEVNGKKVRGRIYPWGVVDIENPAHCDFTMLRNMLIRTHMQDLKDVTQDTHYENYRAKKLASGEPLEVSENGGGGRASQELDSRDALLMEKEAELRRMQEMIAK 1225
            A  +I+RTV +  STVEIEE+GVKL+LTVVDTPG+GD+I+  D +  I+SYIDEQ+E YL DESGLNRR+IIDNRVHCC YFI+P GHGLKP DVA MK +H+KVNIVPVIAKADTLT KE + LK+RIL EI E+ I+IY  P   E ++DE+F    + LK S+PF+VVGSN + E  GKKVRGR+YPWGVV++ENP H DF  LR MLI THMQDL++VTQD HYEN+R+++L            GG +   E  ++D +L+EKEAELRRMQEMIA+
Sbjct:   71 AAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP-DAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKLRTMLI-THMQDLQEVTQDLHYENFRSERLKR----------GGRKVENEDMNKDQILLEKEAELRRMQEMIAR 338

HSP 2 Score: 107.842 bits (268), Expect = 4.136e-25
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:  171 YVGFANLPNQVHRKSVKRGFEFTLMVVGESGLGKSTLVDSLFLTSLYSERETLTAVNRIKRTVSVSQS 374
            YVGFANLPNQVHRKSVK+GFEFTLMVVGESGLGKSTL++SLFLT LY ER    A  +I+RTV +  S
Sbjct:   17 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEAS 84
The following BLAST results are available for this feature:
BLAST of TCONS_00059041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEPT22.113e-11162.14Septin-2 OS=Homo sapiens GN=SEPT2 PE=1 SV=1[more]
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