TCONS_00058975 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058975
Unique Name	TCONS_00058975
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1845

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_315:371394..377316+

transcript sequence

>TCONS_00058975 ID=TCONS_00058975|Name=TCONS_00058975|organism=Clytia hemisphaerica|type=transcript|length=1845bp
taaaatattattttcacaGATGATTATGTTGAAACAGACGAAGGGAGTGA
AGATTATAGAGAGcGTTTTGAAAGGGAACAACAGTACATACATGACGAAC
AAAAACACATTCAAAAAGTTCATAAAGAATTATGTGATATCAACCAAAAA
TTACAGGAGGAACATAAACGACTTAAAGAATGGGAATACAAATTGATGAA
AAGGGACAGTCTTTTAAAACGTAAAGAAAAGGAGTTATCCAACTGTGCCG
ATTCCATGAAAACAGCCCTTCAGAATGAACTCAAAGAACAAGGATCCAGA
CTGGGAGAgGAATCGGATGAAAGACTGAAAGAGTTGTCGAATGAGAATAA
GAAAATTCGAAATACAATGAAAATTCTgacaaaatcaaatgaaaatgtTA
GAAAACGTGCTGAAGAAGGTGAATTAAAGATACAGAAGTACGAAGAAAAA
ACTCAGAATCTCCAAAACCGAATCTCAAATTTGCAGCGAAAGGTAGAAAT
CTTACAGGACCAGAACAAGAAGCAGACATCACAAACAAAATATTCATCTA
ATAACAGCGatAGAAAGATTTCAATACCGTCTAAAGAAGAAACAACACCT
GTTTTCTACGAGGTTTTTGGTTCAACGTTGCAATGGATATCAGAAAAGTA
TCTCACTACGAACATAGTGAATTTAATCAAACATAAACCTCAAAGTGAAC
ATGATCCCTCTGTAGAAGTGAccaatgaaaaatttttgaagGTTTTAGTC
TTGCTGCCCCGTATTTTACCGCAAATTGGTCAACTGCAAACAGACGTACA
GCTGGGATATCTTCAATTCATTTATTGGTCTATTCTTCATGCTGGCCTTT
CCCAATCTTCTCAGAAATATTGCCATTCTGCTACTTATCGAAGAATTGGA
GAAGAATTATACCAGCCCTCTTTGGCTCAGAAGGATAAAGAAACATCGCC
TTCTTTTTACCGCAATAAAAATGTCCACGTTAGATTGCTTTCAAAACTGA
TCTTGTTGTATACCATTACACAAGCTGACGTTTTATCGCAAGTTTTTCAA
ACGCTGAATCAAGACTTACGCTTGGAGAATGGGAAGGATTTCTTCATGAA
GTACAAAGGAACGTTTGTGATTTTCCCTCTCTTCAAACTCACAAATAAGg
tGAATTTGATGAATTCGTTGGATATTCTTATGATTTTATCAACAGACTCG
CCCTATTTGCAACCGTTCTTGGAAAACCTTAGTACAATGGAATGGGTCCA
TTCTATACTAACTATCATGAGAAGTAGTATGGGTGATGAAAATATGTTGG
AAAAATTGAGTCTTCTTTTACAGAGGTTATCCAGAATAAGGTATGACGTA
ATATTTATAGTTTCAAATTgcttagtctagcaagctagacgactaattca
gtcatagtagaaataaagcaaaaaataatggagGGAAAAAAATCTAGTCA
ATTTTAGTTGACAAAATAcaaatacaaactaaatcccgtaacaataatcg
tattatcatataacacctatactactgtattacacgcattataaacgact
ccagtctacaaaTTGCTAGGCTTTctctatttttttcatttttggtggaT
TCTTTATTGTTTATGGTCTTAACTTTGTTTTCTTCTCTACCaaaattact
ttaggcgtacaaactttcgcgagcagaaactttcgcgatttccGCGAATT
ccgcgaattttggcctttttcgcgaaagtaaatgtctttgaaaattctta
acagggcaattcgcgaaagtttatgctcgcgaaaaattctcaaaaaaatt
ggaaatctataaaaccacgaaatcgtaataaatatcaaatttgcg

Run BLAST on NCBI

transcript from alignment at scaffold_315:371394..377316+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058975 ID=TCONS_00058975|Name=TCONS_00058975|organism=Clytia hemisphaerica|type=transcript|length=5923bp|location=Sequence derived from alignment at scaffold_315:371394..377316+ (Clytia hemisphaerica)
taaaatattattttcacaGATGATTATGTTGAAACAGACGAAGGGAGTGA
AGATTATAGAGAGGTAGGTTATACTCGGTCAACACCTTCACAAATTTGAT
ATCTTTGCTGAAAGATTTATTTTCATACATAAACCTTGCATAaatcaaat
atatttcattaacaagttaaaaattttcTACACATTACTAATAGTTTCAT
GCTTTCATACAGCAACAATCATCAGAtgtaaatgaaaatcaaaaacatac
tctttcttatctacagaaattaaaaatttgaaaaaattgatttaagtgtt
aaaaagtgataaaataaaTGCGTGCCTATTATATTGTTCATCCACACAAT
TGATACATAAACCTTTCATAACATTCTTATTATGGTAGTTTGATTATTAT
AAtctgatttcattttcaaattcagcGTTTTGAAAGGGAACAACAGTACA
TACATGACGAACAAAAACACATTCAAAAAGTTCATAAAGAATTATGTGAT
ATCAACCAAAAATTACAGGTTTGTTTACTTATTAATTTGTCTAATTTGGC
TAGCTTCATAGGATTTTGAGACCATTCTTTATATCTGTTATTGGCAAGGT
ATGATCCAATCATGATTGGTCGAAACTGTTCTGTATTCAGCTTTTCcttt
ctttgttaatttttcactGCTACATACAAACACAACCCCTTTTCCGTTCC
CAATTCCATCCCTCATTTCGACTTTTATATTCTTAAAATCTAAATTACTT
CAATCAAAATGTTATAACTCTTTATCTAAACAGGAGGAACATAAACGACT
TAAAGAATGGGAATACAAATTGATGAAAAGGGACAGTCTTTTAAAACGTA
AAGAAAAGGAGTTATCCAACTGTGCCGATTCCATGAAAACAGCCCTTCAG
AATGAACTCAAAGAACAAGGATCCAGACTGGGAGAggtatttataaaaac
tttctTGTGCTCAATCTATTAGAATGCGTACTAATCCGAGCTCGTTGATA
TTTTAAGTGAGTAAGTTTGCAACCGCAGTCGAgagcgacccgaaggctcc
tttttCTCTAGCTGAAGGTagggggagggcgccactcctttccctggatc
tCTCCATTTGCCCTTGATCCatctctttaattgctgagcatcaagcataG
AGGCATCAAGCATAGAGGCATCAAGTatcattttggaaatctttggtatg
acccggctggggatcgaacccacaaccttgcgcaccgtagctggatgctc
taccttcatgctattGATATTTTAACCAGACAGCCAGTTCTAAATGTGAT
CCACTTGAGTAAGTGTAGATGTTTTTTCTCCCTTTAAATAAAGTTGATGT
TTTTGCTCCTTTTAGGAATCGGATGAAAGACTGAAAGAGTTGTCGAATGA
GAATAAGAAAATTCGAAATACAATGAAAATTCTgacaaaatcaaatgaaa
atgtTAGAAAACGTGTAAGTTAGGATTGATTAGCCCTTTTAGCGTTCTGG
GGAGGGGGTCTaaacaaaaatgttgaataactTAAAGATTTCAACCTAGC
CAATAATTTACTGATGCCTTCATTGTCTTTGAGAATTCCCGAAAAATAGG
ACCCTTTCATATTTATTTTGCATTCTTTTGTTTAAACCTTTTAATGCATT
GCATCACCACAGGATAATTATTTTTGAGGCACGATGGGCTAAGGGCTAGT
ATAGTCCACATAACTTCTCATCATTACTTTTGAATGAATGGTTTTTATGC
ATTTATATCTTAGGCTGAAGAAGGTGAATTAAAGATACAGAAGTACGAAG
AAAAAACTCAGAATCTCCAAAACCGAATCTCAAATTTGCAGGTACCCTAA
TCTGAATTGATCTGTATGACGTTTTTCTGTGTTTCTTATTTCGACTTCAG
AGCCGTTTTGTTTGTTCCTTACGGGATTTATATTAAACTTGTTCTCTTTC
ATTTATTCAGCGAAAGGTAGAAATCTTACAGGACCAGAACAAGAAGCAGA
CATCACAAACAAAATATTCATCTAATAACAGCGGTAATTGTCTGGACCTT
TGACCTGTTATAGacagttttgtttttctttataattctTTAAGTAGTGT
TTTTGATAACTAAATTCGTTGGATTATTTATCTTTAAATATCAAGCTACG
AATGACACTGTAGACTCCCTGTGATTGAAGCTTATGTTATTAATGGATGA
ATATTCTTCACCAGAATTCTGAACAAAAAAtacttgtttatttttgtaga
tAGAAAGATTTCAATACCGTCTAAAGAAGAAACAACAGTACGTTCgctta
gattttttttcttgcgGCATTGCATGTGGTGTAGTGACGATACTCATAGG
TTCATAGGTGTTTGAAGGTGCGAAGGTATCTATCCAGGGATGATTCGGAT
GGTTCACTTTTTTTCTCTATCTATTCATATTTCAACTTCTATTTCAGCCT
GTTTTCTACGAGGTTTTTGGTTCAACGTTGCAATGGATATCAGAAAAGTA
TCTCACTACGAACATAGTGAATTTAATCAAACATAAACCTCAAAGTGAAC
ATGATCCCTCTGTAGAAGTGAccaatgaaaaatttttgaaggtgcgaaat
tttaaaatattgtatGAAAGTAAAAACATTAATTTGTTTCCAATTCTTAT
CAAGACATTTCATCGGTCATTCCAGTCACCAGTCTCAGTTAAAACATTAG
ACCATTTCTATTAATATCCATACatcaaattttaacattttccagCGGAT
ATTCGATCAATTTCAAAGgttttggcttgaaaaggttcATCCACCCCCTG
TATCGACATCAAATTGAACAGCAAATTTCAGTAGCCGAATCAAAGAATTT
GCTGAGGTTTTATAAAGGGTTTTAATCTGAAGTTTTATGAAACTATACCT
TACGCCAGGGCATACTCTGCTACATAATACATTGTCGTCATTTTCTCTCA
GGTTTTAGTCTTGCTGCCCCGTATTTTACCGCAAATTGGTCAACTGCAAA
CAGACGTACAGCTGGGATATCTTCAATTCATTTATTGGTCTATTCTTCAT
GCTGGCCTTTCCCAATCTTCTCAGGTTAGTTGCCTTGAAAGAACATTAGA
TACATAGTTCgacttttggtttttgttttctCCAAGAAGGAAGAATTGTA
CAAATTGTACAAATCACAGCTAAGCACAAATTGTTATATGAGCCCCCgcc
cccagcggaccttcaattcacgcaatcacgcaattttttttcaaaaattc
acgcattcacgcaatgttcTTTTGCAATTaacgcaatttttgttcacgca
aagtTTCCCAACTcacacattcacgcaatttttttttattttcacgtata
cgcattcacgcaaactgcTGGGGCCCCTTATATTATGAGATTTGATTATA
TTTTCCCTCTCTCTTCCAGAAATATTGCCATTCTGCTACTTATCGAAGAA
TTGGAGAAGAATTATACCAGCCCTCTTTGGTACGTTTGCTTTTTTCTCAG
TTTTgtcatctttaaaataaaaaaacactttgAAGAACTTGTTGAACCTT
TAAAGTACCAATGACGAGTATACTAGACATTGGCTATTTAGGAGGCTGTA
ATGcacagtttgagttagaaatcgtcatttttggtctaactcgtaggaat
tggattgggtttcatggtcaagcaaaaaaaaaatcaaaagtgagtctttc
CAGCGAGATTTTAAGCCAAAAAGTCAAAAAAAATGCAAAGATTTGACAAA
AATCCACTTTTTTGAGATTTTGACCGTTTTTTGACTATTTTTGGTCAACG
AATGATCCAAGAACCTCCAAATTTGGCTCTGCTTTACTTGATTCTGTCCT
CCAGCGTATCAATTTGAAGTTTTACCATTGGGCATCTTTCTATCATTCAG
GCAGGTCCGCGCAACTTTAATTCCCTTTACCGCCGCCCAACCCGTCCTTC
CTAAATCGGGAGACTCTAAGCTATCCAACGAACTATAAACGAGCTTCTAA
CTCCTTCTAGATCCCGGAGATAAGCCTTtaaagtttgaactagcgaattt
ctttaaaaaacttagaaaaaaatgaccgtggtacttaaagggttaaatgc
TGTTTCTTGGttatttttaacaaatttctttttcgtcTCTTTTAGGCTCA
GAAGGATAAAGAAACATCGCCTTCTTTTTACCGCAATAAAAATGTCCACG
TTAGATTGCTTTCAAAACTGATCTTGTTGTATACCATTACACAAGGTAGG
TTTCGCTTTTTTAGTTGGTTGGAATgaaaagatgtgatttataAAATTTA
CAATGATTTACAGAAAGCATCTGGCGGTAAGATTAAATTGGTTCTAACTT
TCATATTTTAGCTGACGTTTTATCGCAAGTTTTTCAAACGCTGAATCAAG
ACTTACGCTTGGAGAATGtaagttatttttatttagcTCTACCGGCAATT
TTTCGGCGTTATTATACACACTTATAACCATGTTATTCGCTTACCTCTCT
GCTTTGTTGCTTTTTGCTAAACGAGTCCTTTGTActgttttaaaagtttc
tcCTCATATCTAAAAAGGACTTCAGGGATTTCACATTATATTTCACGCAG
TAATCAGTACCTTGAAAACTTGTTAATCATTTTTATTATTCAGGGGAAGG
ATTTCTTCATGAAGTACAAAGGAACGTTTGTGATTTTCCCTCTCTTCAAA
CTCACAAATAAGGTATATATTtctctttttgctttttctttaaTTAAAAG
TTTCTTGTAATTCCTCGTCTTTCATAGATGATGACAATGAACCTATATAC
TGTTGTCTTCTTTTTCTGGAGCTGGACTAGCAAGTATTCTAACTAGGGTA
GttatatatttcattttttaggtGAATTTGATGAATTCGTTGGATATTCT
TATGATTTTATCAACAGACTCGCGTAAGCAATAACGTATATATTGTTAAT
TCTTGCCTTCCCGCATCGAATGCCTTTAAACATGTCATTCTTTTTCCCAA
CGATTTCCCATCAACTCCTGCCAATCTTTTTTCAAACGATTACATTTCAA
ATCACTTCCCTTAAAGTAAAGATTTACTTCTTCAGCTAATTGATATTTAG
ACATCCTGTGTACTTCGTTATAAAATACTGCTCTTTCCTTTTTTTGATTT
CATACAACCAAAGCATGTTGTAGATTTATCTCCTCAACGATGAATTAGAA
TGATTTTTTGTCGATGATTAAAAAGCTTCATATAAACAATGATGACAATC
ACCATTCAcacttctttatttttctacagCCTATTTGCAACCGTTCTTGG
AAAACCTTAGTACAATGGAATGGGTCCATTCTATACTAACTATCATGAGA
AGTAGTATGGGTGATGAAAATATGTTGGAAAAATTGAGTCTTCTTTTACA
GAGGTTATCCAGAATAAGGTATGACGTAATATTTATAGTTTCAAATTgct
tagtctagcaagctagacgactaattcagtcatagtagaaataaagcaaa
aaataatggagGGAAAAAAATCTAGTCAATTTTAGTTGACAAAATAcaaa
tacaaactaaatcccgtaacaataatcgtattatcatataacacctatac
tactgtattacacgcattataaacgactccagtctacaaaTTGCTAGGCT
TTctctatttttttcatttttggtggaTTCTTTATTGTTTATGGTCTTAA
CTTTGTTTTCTTCTCTACCaaaattactttaggcgtacaaactttcgcga
gcagaaactttcgcgatttccGCGAATTccgcgaattttggcctttttcg
cgaaagtaaatgtctttgaaaattcttaacagggcaattcgcgaaagttt
atgctcgcgaaaaattctcaaaaaaattggaaatctataaaaccacgaaa
tcgtaataaatatcaaatttgcg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037145	XLOC_037145	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_315	supercontig	scaffold_315:371394..377316 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5721	0.969449	3.01144	4.13409	1.72883	1.11279	1.78183	2.72112	2.4316	1.80101	1.38399	3.15768	1.8615	1.3178	1.02025	2.17413	2.31313	2.7504	1.77615	2.83815	2.86717	4.23065	3.33648	2.81904	0.841914	1.50278	3.50726	2.6199	2.19363	3.49769

Blast

[Close]

BLAST of TCONS_00058975 vs. Swiss-Prot (Human)
Match: CC138 (Coiled-coil domain-containing protein 138 OS=Homo sapiens GN=CCDC138 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.250e-40
Identity = 126/432 (29.17%), Postives = 221/432 (51.16%), Query Frame = 1

Query:  109 IQKVHKELCDINQKLQEE-------HKRLKEWEYKLMKRDSLLKRKEKELSNCADSMKTALQNE--LKEQGSRLGEESDERLKELSNENKKIRNTMKILTKSNENVRKRAEEGELKIQKYEEKTQNLQNRISNLQRKVEILQDQNKKQTSQTKYSSNNSDRKISIPSKEETTPV---FYEVFGSTLQWISEKYLTTNIVNLIKH--------KPQSEHDPSVEVTNEKFLKVLVLLPRILPQIGQLQTDVQLGYLQFIYWSI--LHAGLSQSSQKYCHSATYRRIGEELYQPSLAQKDKETSP-----------SFYRNKNVHVRLLSKLILLYTITQADVLSQVFQTLNQDLRLENGKDFFMKYKGTFVIFPLFKLTNKVNLMNSLDILMILSTDSPYLQPFLENLSTMEWVHSILTIMRSSMGDENMLEK 1305
            I +++ EL  I+ KLQ E        + L++ E  L++R+ LL R E  LS      +  L     +KEQ     E   E LKE + E K++R++   L + N+ ++K+  E   + +K + + + +Q R+ NLQRK E +  Q  K +S   +   +  ++ +  SK    P+    YE+    + WIS+ +L+      +KH        KPQ +         EK +K+L L+   L  +  +   +   +++FIYWS+  L AG   S+     ++T RR+GE++++  + +  ++ SP           +F+++ N+ +R LS LI+L T+TQAD L+Q F +L  DL+ E GK  F++Y+   VI    ++++K  L N +D L+ ++ +S  LQPFLE  S   +  +   ++R+   D  +LEK
Sbjct:  177 ISQIYDELFQIHLKLQCETAAQQKFAEELQKRERFLLEREQLLFRHENALSKIKGVEEEVLTRFQIIKEQHDAEVEHLTEVLKEKNKETKRLRSSFDALKELNDTLKKQLNEASEENRKIDIQAKRVQARLDNLQRKYEFMTIQRLKGSSHAVHEMKSLKQEKAPVSKTYKVPLNGQVYELLTVFMDWISDHHLSK-----VKHEESGMDGKKPQLKFASQRNDIQEKCVKLLPLMTEQLQWMPFVNIKLHEPFVKFIYWSLRQLDAGAQHSTM----TSTLRRLGEDIFKGVVTKGIQDNSPQHSVENKPKTAAFFKSSNLPLRFLSTLIVLKTVTQADYLAQAFDSLCLDLKTEEGKTLFLEYQAVPVILSHLRISSKGLLSNVIDSLLQMTVESKSLQPFLEACSNSLFFRTCSVLLRAPKLDLQILEK 599

The following BLAST results are available for this feature:

BLAST of TCONS_00058975 vs. Swiss-Prot (Human)

BLAST of TCONS_00058975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC138	4.250e-40	29.17	Coiled-coil domain-containing protein 138 OS=Homo ...	[more]

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TCONS_00058975 (transcript) - C. hemisphaerica