TCONS_00058801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058801
Unique NameTCONS_00058801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058801 ID=TCONS_00058801|Name=TCONS_00058801|organism=Clytia hemisphaerica|type=transcript|length=485bp
TAAAATACGCCTGCCCGCCTGTCCCTGTATggctttgtgaaaaaaaaatt
cgtgtatgactacatggTTCGTGCCactttttaaatcctgagattgTGCC
GGAGTTTTGTTAAATCATGACATTGAGCCATATAccgcaattccattggt
cagtTCTGTGTAAATCCTGTGtcgttttttgaaaactttttggcTTTTCT
GTTGTTGCATGTTAGAGAAATGCACGGAAATGGACTTGTCGACTTGATGT
TGAAGACTTGTCGGAAGATATATTATTGAAAGTTTCATGATTTGTATTCC
TATGATGTTTAGTGTGTGTTTAGATGTATCTTCTGACTGTGTGcaccaat
tttgtttgttttgttggttggCATCTTGTTGGGTTATGTTTTGTatgttt
tttaaaagtttcttttcGATTCAAGACAACAAAAGTCATCACACATCTGG
TATGTAGATAACAAATATCAATCCTTGTGCTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_313:458256..458740

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058801 ID=TCONS_00058801|Name=TCONS_00058801|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at scaffold_313:458256..458740 (Clytia hemisphaerica)
GAACAGCACAAGGATTGATATTTGTTATCTACATACCAGATGTGTGATGA
CTTTTGTTGTCTTGAATCgaaaagaaacttttaaaaaacatACAAAACAT
AACCCAACAAGATGccaaccaacaaaacaaacaaaattggtgCACACAGT
CAGAAGATACATCTAAACACACACTAAACATCATAGGAATACAAATCATG
AAACTTTCAATAATATATCTTCCGACAAGTCTTCAACATCAAGTCGACAA
GTCCATTTCCGTGCATTTCTCTAACATGCAACAACAGAAAAgccaaaaag
ttttcaaaaaacgaCACAGGATTTACACAGAactgaccaatggaattgcg
gTATATGGCTCAATGTCATGATTTAACAAAACTCCGGCAcaatctcagga
tttaaaaagtGGCACGAAccatgtagtcatacacgaatttttttttcaca
aagccATACAGGGACAGGCGGGCAGGCGTATTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037044XLOC_037044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058801-exon-scaffold_313-1491911889:458256..458740TCONS_00058801-exon-scaffold_313-1491911889:458256..458740Clytia hemisphaericaexon
TCONS_00058801-exon-scaffold_313-1510915933:458256..458740TCONS_00058801-exon-scaffold_313-1510915933:458256..458740Clytia hemisphaericaexon
TCONS_00058801-exon-scaffold_313-1575043694:458256..458740TCONS_00058801-exon-scaffold_313-1575043694:458256..458740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_313supercontigscaffold_313:458256..458740 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28543	0.376048	0.436627	0.427172	0.693387	0.547924	0.661047	1.08301	0.216641	0.134172	0	0.256826	0.170979	0.266345	0.510935	0.391651	0.0964964	0.197811	0.136644	0.142988	1.11854	1.27303	1.17907	0.937956	0.13801	0.246342	0.352515	0.752426	0.570689	0.872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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