TCONS_00058682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058682
Unique NameTCONS_00058682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length925

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058682 ID=TCONS_00058682|Name=TCONS_00058682|organism=Clytia hemisphaerica|type=transcript|length=925bp
ctttgaaaaaactaTTATTTACTGCCGCACTATTGATAAAGTCACTGATG
TTCATCGTTACTTTTCTGTAGCTTTCGAAAATGAGGGTGCTCAGCTTCCT
TTTACTGTGTACCATGGGAAGCTAACTAGAAAATGTAGAGAAAAGGCTTT
GAGTGATTTTGTTGCGAGAGATGGTAAAACACGTGTGTTGATTGGTACTT
CAGCCATTGGAATGGGAATAGATATTCCAGACATTCGAACTGTCCTTTTT
TATGGTGTTCCTTCTGATATAGAAAGTCTTGTTCAAGGTATTGGACGTGG
TGGACGTGATGGTGAGCTTTGTGAATGTGTTTTGTTTGTGCGCCCATGTG
ACCATAATCTTGCTAAAGAAGATAAACACTTAaaaaattacattgaaaat
aCAACCATGTGTAGGAGGAAAATTATGATGCTCGCTTTCTCGCACAAGCC
AATTGGTCCAGCTGTCAAGCATTTGTGCTGTGATATTTGTCAATCAAAAT
GCTATTGTGAAGTTTGTGAAGCACCTCCCTCTAGGAAATTCACTGAAAAT
GTTTCTGTTATCTTGCCAAAAAGGAACGTTACACCCAGTCAAAGAGCACT
TGTTAGGGAAATGTTAAATGAATGCAACAGTCTGAATGGTGATCAAGGAG
TTCTTTCAACAGCTTCAGTAACTAGTATAATACCAGAGCATGTCATAACA
GAAATAACAGAAAAATGTGAATTTATCTTTGAAATTGAATACATCAAATG
CAACTTTCAACTCTTTGATGAAGAAACAGAGTTACTTGTGTTGGGAGTAA
TCTGTGACACTTTTAATGACTTTGAAATTCCTgatgattattttgaaaaa
gctAAGGGTATATGCCCTACTAGTTTAAAAACATTTGATCAGCTGATTGA
TTTAAATGCTGATGTTCAAACTGCT
Run BLAST on NCBI

protein sequence of TCONS_00058682-protein

>TCONS_00058682-protein ID=TCONS_00058682-protein|Name=TCONS_00058682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
FEKTIIYCRTIDKVTDVHRYFSVAFENEGAQLPFTVYHGKLTRKCREKAL
SDFVARDGKTRVLIGTSAIGMGIDIPDIRTVLFYGVPSDIESLVQGIGRG
GRDGELCECVLFVRPCDHNLAKEDKHLKNYIENTTMCRRKIMMLAFSHKP
IGPAVKHLCCDICQSKCYCEVCEAPPSRKFTENVSVILPKRNVTPSQRAL
VREMLNECNSLNGDQGVLSTASVTSIIPEHVITEITEKCEFIFEIEYIKC
NFQLFDEETELLVLGVICDTFNDFEIPDDYFEKAKGICPTSLKTFDQLID
LNADVQTA
Run BLAST on NCBI

transcript from alignment at scaffold_312:132002..132926

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058682 ID=TCONS_00058682|Name=TCONS_00058682|organism=Clytia hemisphaerica|type=transcript|length=925bp|location=Sequence derived from alignment at scaffold_312:132002..132926 (Clytia hemisphaerica)
AGCAGTTTGAACATCAGCATTTAAATCAATCAGCTGATCAAATGTTTTTA
AACTAGTAGGGCATATACCCTTagctttttcaaaataatcatcAGGAATT
TCAAAGTCATTAAAAGTGTCACAGATTACTCCCAACACAAGTAACTCTGT
TTCTTCATCAAAGAGTTGAAAGTTGCATTTGATGTATTCAATTTCAAAGA
TAAATTCACATTTTTCTGTTATTTCTGTTATGACATGCTCTGGTATTATA
CTAGTTACTGAAGCTGTTGAAAGAACTCCTTGATCACCATTCAGACTGTT
GCATTCATTTAACATTTCCCTAACAAGTGCTCTTTGACTGGGTGTAACGT
TCCTTTTTGGCAAGATAACAGAAACATTTTCAGTGAATTTCCTAGAGGGA
GGTGCTTCACAAACTTCACAATAGCATTTTGATTGACAAATATCACAGCA
CAAATGCTTGACAGCTGGACCAATTGGCTTGTGCGAGAAAGCGAGCATCA
TAATTTTCCTCCTACACATGGTTGtattttcaatgtaatttttTAAGTGT
TTATCTTCTTTAGCAAGATTATGGTCACATGGGCGCACAAACAAAACACA
TTCACAAAGCTCACCATCACGTCCACCACGTCCAATACCTTGAACAAGAC
TTTCTATATCAGAAGGAACACCATAAAAAAGGACAGTTCGAATGTCTGGA
ATATCTATTCCCATTCCAATGGCTGAAGTACCAATCAACACACGTGTTTT
ACCATCTCTCGCAACAAAATCACTCAAAGCCTTTTCTCTACATTTTCTAG
TTAGCTTCCCATGGTACACAGTAAAAGGAAGCTGAGCACCCTCATTTTCG
AAAGCTACAGAAAAGTAACGATGAACATCAGTGACTTTATCAATAGTGCG
GCAGTAAATAAtagttttttcaaag

Coding sequence (CDS) from alignment at scaffold_312:132002..132926

>TCONS_00058682 ID=TCONS_00058682|Name=TCONS_00058682|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_312:132002..132926 (Clytia hemisphaerica)
AGCAGTTTGAACATCAGCATTTAAATCAATCAGCTGATCAAATGTTTTTA
AACTAGTAGGGCATATACCCTTagctttttcaaaataatcatcAGGAATT
TCAAAGTCATTAAAAGTGTCACAGATTACTCCCAACACAAGTAACTCTGT
TTCTTCATCAAAGAGTTGAAAGTTGCATTTGATGTATTCAATTTCAAAGA
TAAATTCACATTTTTCTGTTATTTCTGTTATGACATGCTCTGGTATTATA
CTAGTTACTGAAGCTGTTGAAAGAACTCCTTGATCACCATTCAGACTGTT
GCATTCATTTAACATTTCCCTAACAAGTGCTCTTTGACTGGGTGTAACGT
TCCTTTTTGGCAAGATAACAGAAACATTTTCAGTGAATTTCCTAGAGGGA
GGTGCTTCACAAACTTCACAATAGCATTTTGATTGACAAATATCACAGCA
CAAATGCTTGACAGCTGGACCAATTGGCTTGTGCGAGAAAGCGAGCATCA
TAATTTTCCTCCTACACATGGTTGtattttcaatgtaatttttTAAGTGT
TTATCTTCTTTAGCAAGATTATGGTCACATGGGCGCACAAACAAAACACA
TTCACAAAGCTCACCATCACGTCCACCACGTCCAATACCTTGAACAAGAC
TTTCTATATCAGAAGGAACACCATAAAAAAGGACAGTTCGAATGTCTGGA
ATATCTATTCCCATTCCAATGGCTGAAGTACCAATCAACACACGTGTTTT
ACCATCTCTCGCAACAAAATCACTCAAAGCCTTTTCTCTACATTTTCTAG
TTAGCTTCCCATGGTACACAGTAAAAGGAAGCTGAGCACCCTCATTTTCG
AAAGCTACAGAAAAGTAACGATGAACATCAGTGACTTTATCAATAGTGCG
GCAGTAAATAAtagttttttcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036971XLOC_036971Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058682-exon-scaffold_312-1491911889:132002..132926TCONS_00058682-exon-scaffold_312-1491911889:132002..132926Clytia hemisphaericaexon
TCONS_00058682-exon-scaffold_312-1510915933:132002..132926TCONS_00058682-exon-scaffold_312-1510915933:132002..132926Clytia hemisphaericaexon
TCONS_00058682-exon-scaffold_312-1575043694:132002..132926TCONS_00058682-exon-scaffold_312-1575043694:132002..132926Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058682-proteinTCONS_00058682-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_312supercontigscaffold_312:132002..132926 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8829	1.25629	0.95375	0.878208	0.467746	0.633633	0.509634	0.298196	0.375793	0.41376	0.602409	0.396	0.494311	0.444901	0.337633	0.301943	0.334772	0.190628	0.210691	0.937008	0.287446	0.350515	0.397691	0.309907	0.957592	0.71219	0.271771	0.507573	0.109993	0.392229
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00058682 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.218e-17
Identity = 65/192 (33.85%), Postives = 88/192 (45.83%), Query Frame = 2 
Query:   11 TIIYCRTIDKVTDVHRYFSVAFENEGAQLPFTVYHGKLTRKCREKALSDFVARDGKTRVLIGTSAIGMGIDIPDIRTVLFYGVPSDIESLVQGIGRGGRDGELCECVLFVRPCDHNLAKEDKHLKNYIEN-------------------TTMCRRKIMMLAFSHKPIGPAVKHL-----CCDICQSK---CY 505
            TIIYC +  K+T       V  E     L    YH  ++   R+     FV RD + + +I T A GMGI+  DIR V+ YG P D+ES  Q IGR GRDG    C +   P D NL   ++HL   I N                   ++ CRR+I++  F  K +  A   +     CCD C+S+   CY
Sbjct:  767 TIIYCPS-RKMTQ-----QVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFV-RD-EIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINL---NRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCY 947
The following BLAST results are available for this feature:
BLAST of TCONS_00058682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN4.218e-1733.85Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
back to top