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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058084 ID=TCONS_00058084|Name=TCONS_00058084|organism=Clytia hemisphaerica|type=transcript|length=5614bpRun BLAST on NCBI transcript from alignment at scaffold_305:40992..66459- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058084 ID=TCONS_00058084|Name=TCONS_00058084|organism=Clytia hemisphaerica|type=transcript|length=25468bp|location=Sequence derived from alignment at scaffold_305:40992..66459- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058084 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 9.629e-57 Identity = 185/630 (29.37%), Postives = 308/630 (48.89%), Query Frame = 3
Query: 2886 EGDVNFRGVYSFPFTLTGHSVSFKCQYGRMDGTEELVFRSCRSNTVGTSAWEKFDISACRPKTVTSEKLIELQTV----ENTEDALIVSRNLSAIVNEGNLTSRFDVEIVTDILKVVVAQNASSTEVAENVIATVDGVLDTDEEILIESNEQMSTSSNILSQLDTLALNQPATENATVIQRRNIGFGILRPDSTTPILIKSLTDSNSNSTQFSITQTNETPDETVDASIILPAEVVGKATNRPIYSYLFK---KPSFFLSKNGNLFIQSMVLSASVGD-VTIRNLTDPVKLGFQTKKPNVT-GLVNTCKFYDMEKQD----WSTEGCRTIRKFGSDEVKCECDHLTNFAILLDVSQT---GANPLALQIITWIGCGISLAGLFLTIVTYMAFAKLRRKLPPKILINLSVSLSAVLIIFLVGAEKTE-PRIG-CQVVAGLLHYFILTTFCWMAIEALNLYRNFVKVFSGGASNFRFMVKCSIFSWGLPAVVVIITAVSKPDHLGPADETHAQFCVVRG---IXXXXXXXXXXXXXXXGNMIVLVLV-LRAIKDGSQLVKDSKAAKNKKMTQARIAFACSVLLGLTWVFAILAIGELRDFFQWLFCIFNSLQGFFIFIFYTLRSTEVRREWK 4709
E ++G Y + T + +C DG F S NT G S WEK C+ +K+++L + EN ED V+ ++ ++NE + + +I+ + + + S + ++ ++ VL+ + +E S+ IL ++ + + + +LR D T + S+ S T I N P + ASI LP + + + + LF + S F +KN + + V+SAS+ D + I+NL DPV + Q N G V+ C F+D E + W++ GC+ +++ + C+CDHLT+F +L+D+S++ N L +IT+ GCGIS L + +VTY+AF KLR+ P KILINL +L + ++FL+ + + ++G C A LHYF+L +F WM +EA+++Y VKVF+ N+ ++K + WG+PA++V IT K D G T FC ++ ++ ++ +M VLV L ++K Q K + + + + + LLGLTW FA A G +R+FF +LF IFN+LQGFFIF+F+ + VR +W+
Sbjct: 2390 ETASKYKGTYKWLLTNPTETAQTRCIKNE-DG-NATRFCSISINT-GKSQWEKPKFKQCKLLQELPDKIVDLANITISDENAED---VAEHILNLINESPALGKEETKIIVSKISDISQCDEISMNLTHVMLQIINVVLEKQNNSASDLHE---ISNEILRIIERTGHKMEFSGQIANLTVAGLALAVLRGDHTFDGMAFSI-HSYEEGTDPEIFLGN-VPVGGILASIYLPKSLTERIPLSNLQTILFNFFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYGQVH-CAFWDFENNNGLGGWNSSGCK-VKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNY--ILKFCLVGWGIPAIMVAITVSVKKDLYGTLSPT-TPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVKSQIQ-----KTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQ 2998 The following BLAST results are available for this feature:
BLAST of TCONS_00058084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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