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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056954 ID=TCONS_00056954|Name=TCONS_00056954|organism=Clytia hemisphaerica|type=transcript|length=1940bpRun BLAST on NCBI protein sequence of TCONS_00056954-protein >TCONS_00056954-protein ID=TCONS_00056954-protein|Name=TCONS_00056954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MAAPIQQISNGAIPIMSGVAGTPVQQPAVVYQQQQPMIVAGAAPMGYAPRRun BLAST on NCBI transcript from alignment at scaffold_284:879845..888875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056954 ID=TCONS_00056954|Name=TCONS_00056954|organism=Clytia hemisphaerica|type=transcript|length=9031bp|location=Sequence derived from alignment at scaffold_284:879845..888875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:879845..888875- >TCONS_00056954 ID=TCONS_00056954|Name=TCONS_00056954|organism=Clytia hemisphaerica|type=CDS|length=19572bp|location=Sequence derived from alignment at scaffold_284:879845..888875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056954 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.287e-32 Identity = 74/220 (33.64%), Postives = 108/220 (49.09%), Query Frame = 2
Query: 218 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMFIEVRKFQRKSEYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEMKVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQAHLNKKKAEG 871
+P + +P+ H CK+F+GG+ T E LR YFG+FGE+ + ++M+D T RGF FVTF V V+ Q+ H LD K F R+++ P + K+FVGG+ + TT +DVK+YFEQFGKV + +GF FV FE+ D+V V + +H+IN K VE K + ++ A G
Sbjct: 7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPRRAQ-------------------------PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARG 198 The following BLAST results are available for this feature:
BLAST of TCONS_00056954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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