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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056877 ID=TCONS_00056877|Name=TCONS_00056877|organism=Clytia hemisphaerica|type=transcript|length=5222bpRun BLAST on NCBI protein sequence of TCONS_00056877-protein >TCONS_00056877-protein ID=TCONS_00056877-protein|Name=TCONS_00056877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp MIPTFSQVPFYVGNQQYHNNNNIVDDAGKIFVGGIPPDASRDTITEYFSTRun BLAST on NCBI transcript from alignment at scaffold_284:889266..905944+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056877 ID=TCONS_00056877|Name=TCONS_00056877|organism=Clytia hemisphaerica|type=transcript|length=16679bp|location=Sequence derived from alignment at scaffold_284:889266..905944+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_284:889266..905944+ >TCONS_00056877 ID=TCONS_00056877|Name=TCONS_00056877|organism=Clytia hemisphaerica|type=CDS|length=17010bp|location=Sequence derived from alignment at scaffold_284:889266..905944+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056877 vs. Swiss-Prot (Human)
Match: DAZP1 (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.429e-36 Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 2
Query: 293 NNNIVDDAGKIFVGGIPPDASRDTITEYFSTYGAVSDVIIMVDNVTGRSRGFCFVTFQDQLAVNKVLAASQKHSINGKVVDAKRAVPKGPNQSQILRAMGVSSN-RADRNPDCKIFVGGVAQGTTESDLENYFKDYGTVLEVKIPKDQNTQRARGFSFVLFETPECVIAATKERYHRINNKTVEVKTVQIQHQKGHSEG 886
NN+ D+ GK+FVGG+ +++T+ YFS YG V D +IM D T +SRGF FV F+D V VLA S+ H+++G+ +D K P+G + G R+D + KIFVGG+ E++L YFK +G V EV + D QR RGF F+ FE + V A +H I K VEVK + + K + G
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA-SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPG 199 The following BLAST results are available for this feature:
BLAST of TCONS_00056877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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