TCONS_00056728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056728
Unique NameTCONS_00056728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length584

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056728 ID=TCONS_00056728|Name=TCONS_00056728|organism=Clytia hemisphaerica|type=transcript|length=584bp
aggAAGCATTAGTCATATTAGAAGATGTTAAACGTCTACAATCGAAAGAT
TCATTGGTTTATTTCCTTATTGGAAGGGTGTACCAACAATTAGAGGAGCC
ACATCTAGCGCAAATGAACTTTTCATGGGCATTAAGTTTGGACCCACAAG
GCACCAACACCATGATCAAAGATGCGATGAACCAACAACGTTTCGGAGAT
CAAAGCACTGTTGATGACGAGGATGAATTTACATTGGGCGATGAAGCGAC
AAATGAACTCCAGGATAGTGAAATGTCCGATTCTTAAAATTTCTTACACT
TCTTTGATACAgtggactctcgctaattcgaactcgaacggagagtatta
tttgttcgaattacagagagattataattatagaaagtattttaagttTC
TCCTTGATAGGGACTGAGAATAAGTTTGAATTATTAAAAGATTGATATAa
taaaagttcgaattagcgagagtttaCTTTACATGATTCTTCTGATGATT
GAGCTTGCTCTTTGCCATGGAAAACCATCTTATATACTCTTCAACCTATC
AGGTTTAATCATTTCGAACCAAGCACTGTGGTCT
Run BLAST on NCBI

transcript from alignment at scaffold_282:147440..148243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056728 ID=TCONS_00056728|Name=TCONS_00056728|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at scaffold_282:147440..148243+ (Clytia hemisphaerica)
aggAAGCATTAGTCATATTAGAAGATGTTAAACGTCTACAATCGAAAGAT
TCATTGGTTTATTTCCTTATTGGAAGGGTAATCTTCACTTCTTTATTCAC
TTAAGTTCTACAATCACTGCAAAACAATTTGTCAGGCCTtcaaactacac
gttttttataaagcTTTATGGACCTAAAAATGCCCAATTTCTTAAAAGCA
ATTGCAGTAAAATACACAACAATTGgtgaaagttaagaacatcctaaggc
tttaaaagttttggacatttttataaaaatgactTTCTCTCCACCAGGTG
TACCAACAATTAGAGGAGCCACATCTAGCGCAAATGAACTTTTCATGGGC
ATTAAGTTTGGACCCACAAGGCACCAACACCATGATCAAAGATGCGATGA
ACCAACAACGTTTCGGAGATCAAAGCACTGTTGATGACGAGGATGAATTT
ACATTGGGCGATGAAGCGACAAATGAACTCCAGGATAGTGAAATGTCCGA
TTCTTAAAATTTCTTACACTTCTTTGATACAgtggactctcgctaattcg
aactcgaacggagagtattatttgttcgaattacagagagattataatta
tagaaagtattttaagttTCTCCTTGATAGGGACTGAGAATAAGTTTGAA
TTATTAAAAGATTGATATAataaaagttcgaattagcgagagtttaCTTT
ACATGATTCTTCTGATGATTGAGCTTGCTCTTTGCCATGGAAAACCATCT
TATATACTCTTCAACCTATCAGGTTTAATCATTTCGAACCAAGCACTGTG
GTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035743XLOC_035743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056728-exon-scaffold_282-1491911889:147440..147516TCONS_00056728-exon-scaffold_282-1491911889:147440..147516Clytia hemisphaericaexon
TCONS_00056728-exon-scaffold_282-1510915933:147440..147516TCONS_00056728-exon-scaffold_282-1510915933:147440..147516Clytia hemisphaericaexon
TCONS_00056728-exon-scaffold_282-1575043694:147440..147516TCONS_00056728-exon-scaffold_282-1575043694:147440..147516Clytia hemisphaericaexon
TCONS_00056728-exon-scaffold_282-1491911889:147737..148243TCONS_00056728-exon-scaffold_282-1491911889:147737..148243Clytia hemisphaericaexon
TCONS_00056728-exon-scaffold_282-1510915933:147737..148243TCONS_00056728-exon-scaffold_282-1510915933:147737..148243Clytia hemisphaericaexon
TCONS_00056728-exon-scaffold_282-1575043694:147737..148243TCONS_00056728-exon-scaffold_282-1575043694:147737..148243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:147440..148243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.49392	4.20967	2.38308	1.40784	5.95183	4.22735	8.14735	6.19266	4.13676	2.41791	1.34442	1.86137	2.0369	1.14404	2.21101	2.16704	6.46662	3.80026	1.74928	3.22788	3.10214	1.17535	6.35086	6.28613	0.973891	1.51743	1.6168	0.909505	3.94172	4.03658
Blast
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BLAST of TCONS_00056728 vs. Swiss-Prot (Human)
Match: CDC27 (Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.117e-19
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = 3 
Query:    6 ALVILEDVKRLQSKDSLVYFLIGRVYQQLEEPHLAQMNFSWALSLDPQGTNTMIKDAMNQQRFGDQSTVDDEDEFTLGDEATNELQDSEMSDS 284
            AL  LE++K++  K+SLVYFLIG+VY++L + HLA MNFSWA+ LDP+G N  IK+A++++   D      ++E  +G   T+E Q+S M+D+
Sbjct:  722 ALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMG---TDESQESSMTDA 811
The following BLAST results are available for this feature:
BLAST of TCONS_00056728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC277.117e-1946.24Cell division cycle protein 27 homolog OS=Homo sap... [more]
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