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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056401 ID=TCONS_00056401|Name=TCONS_00056401|organism=Clytia hemisphaerica|type=transcript|length=1099bp
ATTGTGAAGCCACTCACTGAACTGGTTGAGAGTGATGTTGGAGAAGTTGT
CCAATCATCACTTTTCGCTATATGCAATCTTTGTAAAAGTTTACAATCTT
TTGTACCACTGGTCTTTACTCCACgattcatcaaaatcattttcaaacta
TTAAATTGTGCTGACACAAACATTTTCATAGTTGGGGACATTGCTTGGCT
TCTCGTTCATTTTTCTTGGAATAAATCTGGTTGTAATTTGNAATTTTCAT
TATTGGTGACATTGCTTGGCTTCTCGTTCATTTTTCTTGGAATAAATCTG
GTTGTAATTTGTTGATGGAGTATgattttatcaatgttttgatgaaaaag
gtGAAACTGTTGTCACCTGGCACCCAAGAATATCTTTATGTTGTTCTACC
AAGCCTTAGAGTGATAGGGAACGTTTTTGGTAACCAAGATGATGTTAACA
ATTTGCAATCGGACCCGTCTTTATTTCACGATATTGTTCAAACAGCAAAT
ACGATTTTATTAAGATTCCAGGCTAAGGAATATGTGATCAAAGAATGTCT
ATGGATGATCAGTAATCTGTTTTCATGTCCCATGGAAGATCACCTTTCGA
ATGAAGTTGTTTTGAGAGACgtacaaaaagttgtttttaataTCATGTCC
AATTTTAAGAGTAGTAATCGAGACATTCAGAAAGAGGCTGCTGTTTGCTT
TTGTAATCTCTCACACCAACCCTTGATGCAACAtttcaaagatattttaa
catctGAAGATATTGTGCTTAATTTCATGGAATTCTTAAGAATGGATGAT
TTGGATCTGATCTGGATTTCATTGTCatattttgatttgttgttgaATGA
GGATAAAATGAAAGTAATCTTTCAGAAACATAATGGACTCTCTTATTTGG
ACGCGTTTCAACACCACCCAAATGAAAATATTAGAAGCAAATCATTTCAG
ATTTTACAAACTTTTGGAACAGCTCATCCATCTTGATATCTTGGTTTTag
cattttaaaacattttgttgtGATTTTATATTGTATAATTATATAATACG
CTTTgtatagaaataaaaaattgaatgatACGAATTTCGATAATACTCG Run BLAST on NCBI transcript from alignment at scaffold_276:1..2944+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056401 ID=TCONS_00056401|Name=TCONS_00056401|organism=Clytia hemisphaerica|type=transcript|length=2944bp|location=Sequence derived from alignment at scaffold_276:1..2944+ (Clytia hemisphaerica)
ATTGTGAAGCCACTCACTGAACTGGTTGAGgtaattgtttttattctttt
gatatGGTATGATATGACCAGAATTCACTCCTTGCTTTATCATTATTAAA
TCATGCCCATAGTTTGTTCATATATAaatattcgacaagaaaaatcgaaa
aatcgtaaaaacaGTTAAGTATGATGTCATCAAGCGGTACTGGATTTTTT
Tcgactttcaatttttcagcattaaagcattaaagatataggaaaaataa
atatagAGAAAAATTAGGGACCAGATTCCNGaacattttttattaaattt
ctaaATTGTCCCTATTTGTATTCTTTATTTACAGTGTTTCATTTTGTCCC
AAATCCACTAATATTTCATTCTAAACTATAGCCAACTATCATTTTGCATG
TTCCAAAGAATTACTTTAAAAGTGCTCAAAACAATAAATAAACTGCACTT
CCTTCTAGATTTCGACTGGAAAAACCACTCCAAGCGGAGCATTATGAtca
ggaaaaagtcaaaatgatgACCAAAAATATCCTCAGGAAGGGTAAAGATA
CTCAAAATCATTTGAAATACTTAAGAAATGCTTTCGCTGAATCGTGTCAG
AACATTGATGCTTTTTTGGAGGTTGACAATGCCCTTTACACACTTGTTGG
GTATTTAACTGGCAACAATACAACATTACAATTAGAAGCTGTTTGGTGTT
TAACAAATATCACTGctaatgaaaatcaaaatattgaaacctTCGTGAAA
GCTACTTCAGCATACTTGATTACTTTCTTGAAAAGTGGGAGTGTTCTCTT
ACAAGATCAAAGTGCATGGGCATTGGGTAATATGGCAGCTGATAGCCATA
ACATTAGGGAAATATTGAAAGCTCAAGGGATTGTGAAGCCACTCACTGAA
CTGGTTGAGgtaattgtttttattcttttgatatGGTATGATATGACCAG
AATTCACTCCTTGCTTTATCATTATTAAATCATGCCCATAGTTTGTTCAT
ATATAaatattcgacaagaaaaatcgaaaaatcgtaaaaacaGTTAAGTA
TGATGTCATCAAGCGGTACTGGATTTTTTTcgactttcaatttttcagca
ttaaagcattaaagatataggaaaaataaatatagAGAAAAATTAGGGAC
CAGATTCCAGCTATCCCTGTTATTAAACTTAATTGTTTATAAAATGAGGT
AGGGTAGAAAGATCATAGTCACCAACTGAAAAACTTCtgaaagaaataaa
gaactcACAATTGCaattatctttgttttttagAGTGATGTTGGAGAAGT
TGTCCAATCATCACTTTTCGCTATATGCAATCTTTGTAAAAGTTTACAAT
CTTTTGTACCACTGGTCTTTACTCCACgattcatcaaaatcattttcaaa
ctaTTAAATTGTGCTGACACAAACATTTTCATAGTTGGGGACATTGCTTG
GCTTCTCGTTCATTTTTCTTGGAATAAATCTGGTTGTAATTTGNAATTTT
CATTATTGGTGACATTGCTTGGCTTCTCGTTCATTTTTCTTGGAATAAAT
CTGGTTGTAATTTGTTGATGGAGTATgattttatcaatgttttgatgaaa
aaggtGAAACTGTTGTCACCTGGCACCCAAGAATATCTTTATGTTGTTCT
ACCAAGCCTTAGAGTGATAGGTATAATGAATGTTTATTAATCAGAGTCTC
TCAGATAAAGCTATTATGGTCAACTGATGCTATCATTAACTTTCACAAGA
TAAAACATCTTCCTGAAGACTGAGTTCTTGTCATTATTGAATGGATTAAA
TTTTGTGTGAATTTTCACAGATTTTTAGGCCgattttgcaaaatattgtC
CTCGCGAAAAATTTGTAATCAAGATTTTTGTTGAAGTGTAAGAAATCGGG
AGAAAAAGATGCCTACTCATGCGAAAATTTTTCATCTTCCAATTCGAGAA
AAAAGTTAACGCAAAATTTCATCCACTTGAGGTATCCATGTATCATTCAT
GAAAAGTGGCTTTTTGgtgataaaaaaattatgtgTTGTCATTTTAGGGA
ACGTTTTTGGTAACCAAGATGATGTTAACAATTTGCAATCGGACCCGTCT
TTATTTCACGATATTGTTCAAACAGCAAATACGATTTTATTAAGATTCCA
GGCTAAGGAATATGTGATCAAAGAATGTCTATGGATGATCAGTAATCTGT
TTTCATGTCCCATGGAAGATCACCTTTCGAATGAAGTTGTTTTGAGAGAC
gtacaaaaagttgtttttaataTCATGTCCAATTTTAAGAGTAGTAATCG
AGACATTCAGAAAGAGGTAAAGAtgtttacactttttttttaaagaacat
cacattttttaagcctttggatgttcttaactttttgacttttcttaaca
tgttcttattttcgccattttctgaaaagccttaaaatgtttttaatttg
ttcttaacattttggccatcgaagccttatgttcttgtatagtttgttct
tataaaaaaacgtgtacataatTTCTTACAGGCTGCTGTTTGCTTTTGTA
ATCTCTCACACCAACCCTTGATGCAACAtttcaaagatattttaacatct
GAAGATATTGTGCTTAATTTCATGGAATTCTTAAGAATGGATGATTTGGA
TCTGATCTGGATTTCATTGTCatattttgatttgttgttgaATGAGGATA
AAATGAAAGTAATCTTTCAGAAACATAATGGACTCTCTTATTTGGACGCG
TTTCAACACCACCCAAATGAAAATATTAGAAGCAAATCATTTCAGATTTT
ACAAACTTTTGGAACAGCTCATCCATCTTGATATCTTGGTTTTagcattt
taaaacattttgttgtGATTTTATATTGTATAATTATATAATACGCTTTg
tatagaaataaaaaattgaatgatACGAATTTCGATAATACTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056401-exon-scaffold_276-1491911889:1..30 | TCONS_00056401-exon-scaffold_276-1491911889:1..30 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1510915933:1..30 | TCONS_00056401-exon-scaffold_276-1510915933:1..30 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1575043694:1..30 | TCONS_00056401-exon-scaffold_276-1575043694:1..30 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1491911889:1284..1670 | TCONS_00056401-exon-scaffold_276-1491911889:1284..1670 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1510915933:1284..1670 | TCONS_00056401-exon-scaffold_276-1510915933:1284..1670 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1575043694:1284..1670 | TCONS_00056401-exon-scaffold_276-1575043694:1284..1670 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1491911889:2048..2316 | TCONS_00056401-exon-scaffold_276-1491911889:2048..2316 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1510915933:2048..2316 | TCONS_00056401-exon-scaffold_276-1510915933:2048..2316 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1575043694:2048..2316 | TCONS_00056401-exon-scaffold_276-1575043694:2048..2316 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1491911889:2532..2944 | TCONS_00056401-exon-scaffold_276-1491911889:2532..2944 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1510915933:2532..2944 | TCONS_00056401-exon-scaffold_276-1510915933:2532..2944 | Clytia hemisphaerica | exon |
| TCONS_00056401-exon-scaffold_276-1575043694:2532..2944 | TCONS_00056401-exon-scaffold_276-1575043694:2532..2944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:1..2944 + |
Blast
The following BLAST results are available for this feature:
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