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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055946 ID=TCONS_00055946|Name=TCONS_00055946|organism=Clytia hemisphaerica|type=transcript|length=8544bp transcript from alignment at scaffold_266:471855..517296+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055946 ID=TCONS_00055946|Name=TCONS_00055946|organism=Clytia hemisphaerica|type=transcript|length=45442bp|location=Sequence derived from alignment at scaffold_266:471855..517296+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055946 vs. Swiss-Prot (Human)
Match: AGRIN (Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5) HSP 1 Score: 131.724 bits (330), Expect = 4.191e-30 Identity = 128/494 (25.91%), Postives = 185/494 (37.45%), Query Frame = 3
Query: 6900 VCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKC-------------------------VKVCPFNYEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGEC-GNPACPD----------------------SCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKC--------------------------VKCSPICNKMWDPYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCKEP----------------TCPLKCPSDRNRVCGTNGKTYASLCRLQQDTCRDESIVLRHTGSLCRLQQDTCRDESIVLRHTGPCANRCRVNKRCGFRYR-PVCGTDSKTYANHCELRKAMCISNGKIRKAHSGRCKKCSRGQPKVRCVSNPCAGAYCPKYPRAQCVANYCGSCNAQFYMRGKRIEDCGTKCSEAC-TREFSPICGSDGRTYGNPCTMAVATCKSKGAISMSYVGPCRMKYY 8105
VCGSDG + C++ +AC + +FK DG C C + CP P CG DG Y+N C+M + G + G+C G CP+ +CD A + VC DG TY+S C QQ C + KH G C +C C+ ++DP CG+D TYG+ C + C G +Q+ G C CP +C + VCG++G TY S C L C + + + C +TC D V C+ V RC PVCG+D TY + CELR+A C+ +I +A +G C++ C C C + + + ED C +C + SP+CGSDG TY C + A C+S+ + ++ G CR +
Sbjct: 284 VCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRP-VCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPC----ETCGD--AVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAE------------CGSGGSGSGEDGDCEQEL---CRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTF 755 HSP 2 Score: 116.701 bits (291), Expect = 1.439e-25 Identity = 124/456 (27.19%), Postives = 168/456 (36.84%), Query Frame = 3
Query: 6879 CPAVYEPVCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKCVKVCPFNYEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGECGNPACPDSCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKCVKCSPI-------------------------CNKMWDPYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCK-EPTCP------LKCPSDRNR----------------VCGTNGKTYASLCRLQQDTCRDE-SIVLRHTGSLCRLQQDTCRDESIVLRHTGPCAN---RCRVNKRCGFRYRPVCGTDSKTYANHCELRKAMCISNGKIRKAHSGRCKKCSRGQPKVRCVSNPCAGAYCPKYPRAQCVANYCGSCNAQFYMRGKRIEDCGTKCSEACTREFSPICGSDGRTYGNPCTMAVATCKSKGAISMSYVGPC 8090
CP+V PVCGSD T+SN CE++ C + +I + G CG + C TC G + +G + CP +C A + VCGSDG Y C+L +++CA V K G C C C P CG D TY N+C+M G +Q G+C+ CP C S R R VC +G+TY S C QQ CR + +I +H G C C T N C + C Y PVCG+D TY + CEL C +I+ A G C +C GQ + GA C + +CV C C P+CGSDG TY + C + V C + ++ ++ GPC
Sbjct: 202 CPSVVAPVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGS--------------------RDPC--SNVTCSFGSTCARSADGLTASCLCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKFDGPCDPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGP-CDQAPSPCLGVQCAFGATCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRC--GQCRF--------GALC-EAETGRCV------------------------CPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPC 599 HSP 3 Score: 97.0561 bits (240), Expect = 1.584e-19 Identity = 113/441 (25.62%), Postives = 164/441 (37.19%), Query Frame = 1
Query: 754 CPFSYEPLCGSDGQTYDNECLLQIAQCKDASINKKSDGMCRPPTKCEIKASEKQIPGKYIPQC-KVDGSYSTKQCHFSTGYCWCVDPHTGNELYGSRKNARGRNFECGTPCLKACARIFKPVCGSDKKTYGNKCELENAQCE-NNALQMVSDG---KCQQSQIQPMKPVQDDD--CPGICTREYEPHCGSDGKTYSNLCVLKSAIKCNYGDLQLAYKGKCKECGVGQPRAFCTF---------------KPCAKKACLSN----------KKAVCMQD---------PC--GGCTNKWYLDGEEYECKQEACNQACFYLWD--------------------PRCGSNGKTYANQCNLEVAQCQDNSITWVAN---------GPCPKVTA----------CQKQSSNARGLLGEYVP---QCSSSGKFEKLQCHPSTAHCWC 1821
C +Y P+C DG+TYD++C Q A+C+ ++ IP K+ C + QC F +N + CL+AC+ ++ PVCGSD TYG+ CELE C +Q+ G +C Q + + + CP C +P CGSDG TY + C+L + L +A G C+ CG A C F P C S+ ++A C+Q PC C + GE+ +C+QE C Q +WD P CGS+G TY+ +C L+ A+C+ +VA P P V CQ + ARG+ P QC+ G + C P+T C C
Sbjct: 421 CDGAYRPVCAQDGRTYDSDCWRQQAECRQ----------------------QRAIPSKHQGPCDQAPSPCLGVQCAFGA-------------------TCAVKNGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCG----DAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQR-GGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTFAPLPPVAPLHCAQTPYGCCQDNITAARGVGLAGCPSACQCNPHGSYGG-TCDPATGQCSC 814 HSP 4 Score: 95.9005 bits (237), Expect = 2.949e-19 Identity = 130/527 (24.67%), Postives = 188/527 (35.67%), Query Frame = 3
Query: 6165 FCGSDGKTYSNEC-LLKVAQCENNKIILQNQGPCVDKDLTPCQNEV----RSAENGP------LLI------GSYKPQCDESGAYKQIQC-HGSTGYCWCVDKKGVKKQGTEKAPGQGQPNCYDDEESN---LSREQR----CMRV-CTFEYDPVCASNRQTMANKCVFNYQKCLDN-SLTIKHTGQCSECPRNVPIVTCAVNPCDTSTCPAFPKARCQGNYCGGCNAEFFVNDKKVDCLIRPEPRSLIKPFAAAGPSVPQCSMICPAVYEPVCGSDGQTHSNNCEMEMKACVKSSKIFKMHDGECGKCVK--------------VCPFN----YEPQCGTDGKNYDNQCIMQQKTCQTGGKVGLAYEGEC----------------GNPACPDSCDSADKEQVCGSDGNTYESFCKLQQKSCATGSVVKFKHFGKCVKCS----------------PICNK---MWD--------------------PYCGTDDRTYGNECMMNFGTCRSGGRVQLKHHGKCKEPT 7445
CGSDG Y EC LL+ A + + GPC PCQ + RS P +L+ P C + G + C G +G +G+ Q QG+ C + N LSR R C RV C Y PVCA + +T + C +C ++ KH G C + P V CA +TC V + + C +C C ++Y+PVCGSDG T+ + CE+E AC +I G C +C + VCP +P CG+DG Y ++C++ C + +A G C G CP C+ VCGSDG TY S C+L++ +C + ++ G C + +C + +WD P CG+D TY EC + C S + + G C+ PT
Sbjct: 284 VCGSDGADYPGECQLLRRACARQENVFKKFDGPC-----DPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQAPVCGDDGVTYENDCVMGRSGA-----ARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFG----ATC--------------------AVKNGQAAC---------------------ECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCP-RCEHPPPGPVCGSDGVTYGSACELREAACLQQTQIEEARAGPCEQAECGSGGSGSGEDGDCEQELCRQRGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPT 754 HSP 5 Score: 93.5893 bits (231), Expect = 1.797e-18 Identity = 126/485 (25.98%), Postives = 177/485 (36.49%), Query Frame = 1
Query: 748 KACPFSYEPLCGSDGQTYDNECLL-QIAQCKDASINKKSDGMCRP----PTKCEIKA---SEKQIP----------GKYIPQCKVDGSYSTKQCHFSTGYC---------------WCVDPHTGNE-LYGSRKNARGRNFECGTPCLKACARIFKPVCGSDKKTYGNKCELENAQCE-NNALQMVSDG---KCQQSQIQPMKPVQDDDC--PGICTREYEPHCGSDGKTYSNLCVLKSAIKCNYGDLQLAYKGKCKECGVGQPRAFCTFKP-CAKKACLSNKKAVCMQDPCGGCTNKWYLDGEEYECKQEACNQACFYLWDPRCGSNGKTYANQCNLEVAQCQDNSITWVANGPCPKVTACQKQSSNARGLLGEYVPQCSSSGKFEKLQCHPSTAHCWCVEEDSGREISGTRQPAGKKVDCLSCVKPCRREYK-------PVCGSDGRTYPNECEFENAKCKD-RSLTIKNYFTCQDDIEKSVVP 2055
++CP P+CG DG TY+N+C++ + + + K G C+ P C A S + P G Y P C DG C C P G + +G+ + N + CL+AC+ ++ PVCGSD TYG+ CELE C +Q+ G +C Q + + + C P C +P CGSDG TY + C+L + L +A G C+ CG A C F C+ C+ + C P G P CGS+G TY + C L A C Q Q AR +G E+ +C + ED E RQ G D S PC ++ PVCGSDG TY ECE + A+C+ R L + C+ + P
Sbjct: 347 ESCPARQAPVCGDDGVTYENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFGATCAVK--NGQAACECLQACSSLYDPVCGSDGVTYGSACELEATACTLGREIQVARKGPCDRCGQCRFGALCEAETGRCVCPSECVALAQPVCGSDGHTYPSECMLHVHACTHQISLHVASAGPCETCG----DAVCAFGAVCSAGQCVCPR---CEHPPPG-----------------------------PVCGSDGVTYGSACELREAACLQ-----------------QTQIEEAR------------AGPCEQAECGSGGSG---SGEDGDCEQELCRQ-RGGIWDEDSEDGPCVCDFSCQSVPGSPVCGSDGVTYSTECELKKARCESQRGLYVAAQGACRGPTFAPLPP 760 The following BLAST results are available for this feature:
BLAST of TCONS_00055946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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