TCONS_00055847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055847
Unique NameTCONS_00055847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055847 ID=TCONS_00055847|Name=TCONS_00055847|organism=Clytia hemisphaerica|type=transcript|length=1286bp
AGTTGACAAAGGAAATAAACTACAGTTGATGGACAAAATGCAACAGACAC
CTAACAACCCATGTATATATTTGCCAGGACCACAGTTGACTGGCTGTtat
caaactaaaatgaaatatACAAAAAACTAAATGTTATATATTTTATCCTC
TAACATATCATATGTGGTAAAGTTCTAGTGTTCATCATTCTATATTTCTG
GTTCCGATTCTGATTCTCCCTCCCGGCATTCCACTTGTTCTTCTACTTCA
TCATTAATAAGTTCATTATCTGGCAGTTCGATTTCGTCTCTCGATTGTAG
AAGATCTACTAAAAATTCAGGTGATTCACAATTTCCACACTCACATCTTT
GGTGACAAAAGTCACAACATGTATGTTTTGGTTGTATTTTGCTTGGTTTT
GAATCATAAACCTCAAGATGAATTTCTCTCCTACAACGTTGAGTGTTTGT
CACATAATCTCTAATATCCTTTTTCACATAGCGAGAAATGCAGCGTGGAT
AAAGCAGTAGTAAGGCAGAGCATTGAGCGTCATCTCTTCCTGCTCTACCA
GATTCTTGGAAATATGAATCAAGATCTGATGGCACCCCAAAATGAATGAT
TCGATGTAGATCCTTGCAATCAATCCCCATTCCAAATGCTATGGTGGCTA
TCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGCTTTGATTATCCTT
TCCTTGATTTCTGGTCTCGTTGTGCGATGAAACATCGCAAATGGTCTTTC
ATCATACGTATAATCATTGTagaattcattttcaaaagatgcTATGGTGG
CTATCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGCTTTGATTATC
CTTTCCTTGATTTCTGGTCTCGTTGTGCGATGAAACATCGCAAATGGTCT
TTCATCATACGTATAATCATTGTagaattcattttcaaaagattcATATA
GGTCTCTTAATCTGCTTCTGTCACAAAAGATAATGACCCTCTCTGCTTTG
TAACCATTATCTCTTAGATTTTTGATCAATGGTGCAAATAAAGTATCACa
atctaaattttttgtttttttaacgtAATAAGTGATGTTAGACTTTCCAG
GTGCCATAATTAGCAACTCTGGGGTAATCATTTGAAGGTTGGAAATAATA
AATTCACGCGTAGACTTGGTTGCAGTAGCAGTCATTGCAACAAACGGTAA
TCTACGAGCCACAAATGACCGAATTTCAGCAAGTCTTGAGTAACACTGAC
GAAAAGCAGCCTTTTTTGGATTGTCCGATGTACCCC
Run BLAST on NCBI

transcript from alignment at scaffold_263:124849..126287+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055847 ID=TCONS_00055847|Name=TCONS_00055847|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at scaffold_263:124849..126287+ (Clytia hemisphaerica)
AGTTGACAAAGGAAATAAACTACAGTTGATGGACAAAATGCAACAGACAC
CTAACAACCCATGTATATATTTGCCAGGACCACAGTTGACTGGCTGTtat
caaactaaaatgaaatatACAAAAAACTAAATGTTATATATTTTATCCTC
TAACATATCATATGTGGTAAAGTTCTAGTGTTCATCATTCTATATTTCTG
GTTCCGATTCTGATTCTCCCTCCCGGCATTCCACTTGTTCTTCTACTTCA
TCATTAATAAGTTCATTATCTGGCAGTTCGATTTCGTCTCTCGATTGTAG
AAGATCTACTAAAAATTCAGGTGATTCACAATTTCCACACTCACATCTTT
GGTGACAAAAGTCACAACATGTATGTTTTGGTTGTATTTTGCTTGGTTTT
GAATCATAAACCTCAAGATGAATTTCTCTCCTACAACGTTGAGTGTTTGT
CACATAATCTCTAATATCCTTTTTCACATAGCGAGAAATGCAGCGTGGAT
AAAGCAGTAGTAAGGCAGAGCATTGAGCGTCATCTCTTCCTGCTCTACCA
GATTCTTGGAAATATGAATCAAGATCTGATGGCACCCCAAAATGAATGAT
TCGATGTAGATCCTTGCAATCAATCCCCATTCCAAATGCTATGGTGGCTA
TCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGCTTTGATTATCCTT
TCCTTGATTTCTGGTCTCGTTGTGCGATGAAACATCGCAAATGGTCTTTC
ATCATACGTATAATCATTGTagaattcattttcaaaagatgcTATGGTGG
CTATCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGCTTTGATTATC
CTTTCCTTGATTTCTGGTCTCGTTGTGCGATGAAACATCGCAAATGGTCT
TTCATCATACGTATAATCATTGTagaattcattttcaaaagatgcTATGG
TGGCTATCAAAATTCTCACCATACCATCAGGGTCTTGAAAGGCTTTGATT
ATCCTTTCCTTGATTTCTGGTCTCGTTGTGCGATGAAACATCGCAAATGG
TCTTTCATCATACGTATAATAATTGTagaattcattttcaaaagagtcAT
ATAGGTCTCTTAATCTGCTTCTGTCACAAAAGATAATGACCCTCTCTGCT
TTGTAACCATTATCTCTTAGATTTTTGATCAATGGTGCAAATAAAGTATC
ACaatctaaattttttgtttttttaacgtAATAAGTGATGTTAGACTTTC
CAGGTGCCATAATTAGCAACTCTGGGGTAATCATTTGAAGGTTGGAAATA
ATAAATTCACGCGTAGACTTGGTTGCAGTAGCAGTCATTGCAACAAACGG
TAATCTACGAGCCACAAATGACCGAATTTCAGCAAGTCTTGAGTAACACT
GACGAAAAGCAGCCTTTTTTGGATTGTCCGATGTACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035163XLOC_035163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055847-exon-scaffold_263-1491911889:124849..125791TCONS_00055847-exon-scaffold_263-1491911889:124849..125791Clytia hemisphaericaexon
TCONS_00055847-exon-scaffold_263-1510915933:124849..125791TCONS_00055847-exon-scaffold_263-1510915933:124849..125791Clytia hemisphaericaexon
TCONS_00055847-exon-scaffold_263-1575043694:124849..125791TCONS_00055847-exon-scaffold_263-1575043694:124849..125791Clytia hemisphaericaexon
TCONS_00055847-exon-scaffold_263-1491911889:125945..126287TCONS_00055847-exon-scaffold_263-1491911889:125945..126287Clytia hemisphaericaexon
TCONS_00055847-exon-scaffold_263-1510915933:125945..126287TCONS_00055847-exon-scaffold_263-1510915933:125945..126287Clytia hemisphaericaexon
TCONS_00055847-exon-scaffold_263-1575043694:125945..126287TCONS_00055847-exon-scaffold_263-1575043694:125945..126287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:124849..126287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0328887	0	0.122968	0	0	0	0	0.391952	0	0	0	0	0	0	0	0.209721	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00055847 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 3.140e-19
Identity = 82/326 (25.15%), Postives = 135/326 (41.41%), Query Frame = -3 
Query:  346 FRQCYSRLAEIRSFVARRLPFVAMTATATKSTREFIISNLQMITPELLIMAPGKSNITYYVK-KTKNLDCDTLFAPLIKNLRDNGYKAERVIIFCDRSRLRDLYESFENEFYNDYTYDERPFAMFHRTTRPEIKERIIKAFQDPDGMVRILIATIASFENEFYNDYTYDERPFAMFHRTTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKDLHRIIHFGVPSDLDSYFQESGRAGRDDAQCSALLLLYPRCI--SRYVKKDIR---------------DYVTNTQRCRREIHLEVYDSKPSK-----IQPKHTCCDFCHQR 1254
            FR  + +L  +++ +   +P VA+TATA+ S RE I+  L +  P++      + N+   V+ KT N+  D    P +     +       II+C   ++                                         Q   G +R L  +  ++               A    +TR +I  R ++        ++ +IATIAFGMGI+  D+ ++IH+G P D++SY+QE GRAGRD  Q S  +L  P  I  +R++  +IR               +   ++ RCRR+I L  ++ K  +     I     CCD C  R
Sbjct:  680 FRDSFRKLGSLKTALPM-VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQD--LQPFLVKTSSHWEFEGPTIIYCPSRKMT----------------------------------------QQVTGELRKLNLSCGTYH--------------AGMSFSTRKDIHHRFVR------DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSR 942
The following BLAST results are available for this feature:
BLAST of TCONS_00055847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN3.140e-1925.15Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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