TCONS_00055756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055756
Unique NameTCONS_00055756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1023

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=transcript|length=1023bp
AAGGAAAAGAATTCAAAACACAGAAGAAAATGGAGGAGACAAGTGTTAGA
TTCCAACTTCTTTCTGAagaagaactttcaaaaatagcTGAAGaatcgaa
aaacaaaaacactaaAAGGAGTACGAACACTTGGATCAATGTCTACAAAA
GCTGGGCTGTTCAGAGAAATATGAAAGTCCAGTTGGAAGAGTACAGCCCT
CCTGAATTGGATGCTGTATTATGCCAGTTCTACGGTGAAGTCAGAAAGAG
AGATGGAGATGATTATGAACCAGACTCTTTACGTGTAATGCAGGCAGGAC
TTCATCGTTACCTTGTAGAAAACAACTATCCGAAGTCTATCATGGATGAG
ACTGTATTCaataaaagcatcaaaactCTTGAAGGGAAAGCACGTTTGTT
TAGACAAAATGGAATGGGGAAACGTCCAAATGCTAGTCAAGCTATTACGA
GGGATGAGGAAGATGAACTTTGGCGTTCTGGAAAATTGGGAATATCGAAC
CCAGTTTCACTGCTGCATACAATATGGTTCCTTAACATTCAACACTTTGG
TCAACGAGGCCAACAAGAGCATGCTTCATTGAATATCGAAAATTTCCAAA
CGAAAACTGACGAAGAAAGTGGATTAGTGTACATTGAGTATTTTGAGCCT
CCCACAAAAACACGTCAACACGGTTTGCACCCGAATCCTCGAGTTACAAA
TCCAAAGATGTTTGAAATACCTGACAATGAAAGATGTCCTGTCAGGATAT
TTAATTTTTACGTTTCAAAGCGCCCTTCAAATCTACAAAACACTGGTCGT
TTTTATCTTTCACCGAAATCTGTTTATTCGAAAGACGTTGATGAACCTTG
GTTTAAAAGCGTTGCTGTTGGCAAAAACAAGATTGCAACCTTTATGAAAG
AGATTATTTCAGGTACAAACATCGAAAAAGGCAAGAAAATCACTAATCAT
AGTGGTcgaaaactttttgtcaaaaagatGAAAGCAGCCAACATTCCTGA
AACCTCAATCATCAAGATAACTG
Run BLAST on NCBI

protein sequence of TCONS_00055756-protein

>TCONS_00055756-protein ID=TCONS_00055756-protein|Name=TCONS_00055756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
GKEFKTQKKMEETSVRFQLLSEEELSKIAEESKNKNTKRSTNTWINVYKS
WAVQRNMKVQLEEYSPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGL
HRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITR
DEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQT
KTDEESGLVYIEYFEPPTKTRQHGLHPNPRVTNPKMFEIPDNERCPVRIF
NFYVSKRPSNLQNTGRFYLSPKSVYSKDVDEPWFKSVAVGKNKIATFMKE
IISGTNIEKGKKITNHSGRKLFVKKMKAANIPETSIIKIT
Run BLAST on NCBI

transcript from alignment at scaffold_258:228802..229824

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at scaffold_258:228802..229824 (Clytia hemisphaerica)
CAGTTATCTTGATGATTGAGGTTTCAGGAATGTTGGCTGCTTTCatcttt
ttgacaaaaagttttcgACCACTATGATTAGTGATTTTCTTGCCTTTTTC
GATGTTTGTACCTGAAATAATCTCTTTCATAAAGGTTGCAATCTTGTTTT
TGCCAACAGCAACGCTTTTAAACCAAGGTTCATCAACGTCTTTCGAATAA
ACAGATTTCGGTGAAAGATAAAAACGACCAGTGTTTTGTAGATTTGAAGG
GCGCTTTGAAACGTAAAAATTAAATATCCTGACAGGACATCTTTCATTGT
CAGGTATTTCAAACATCTTTGGATTTGTAACTCGAGGATTCGGGTGCAAA
CCGTGTTGACGTGTTTTTGTGGGAGGCTCAAAATACTCAATGTACACTAA
TCCACTTTCTTCGTCAGTTTTCGTTTGGAAATTTTCGATATTCAATGAAG
CATGCTCTTGTTGGCCTCGTTGACCAAAGTGTTGAATGTTAAGGAACCAT
ATTGTATGCAGCAGTGAAACTGGGTTCGATATTCCCAATTTTCCAGAACG
CCAAAGTTCATCTTCCTCATCCCTCGTAATAGCTTGACTAGCATTTGGAC
GTTTCCCCATTCCATTTTGTCTAAACAAACGTGCTTTCCCTTCAAGagtt
ttgatgcttttattGAATACAGTCTCATCCATGATAGACTTCGGATAGTT
GTTTTCTACAAGGTAACGATGAAGTCCTGCCTGCATTACACGTAAAGAGT
CTGGTTCATAATCATCTCCATCTCTCTTTCTGACTTCACCGTAGAACTGG
CATAATACAGCATCCAATTCAGGAGGGCTGTACTCTTCCAACTGGACTTT
CATATTTCTCTGAACAGCCCAGCTTTTGTAGACATTGATCCAAGTGTTCG
TACTCCTTttagtgtttttgtttttcgattCTTCAgctatttttgaaagt
tcttctTCAGAAAGAAGTTGGAATCTAACACTTGTCTCCTCCATTTTCTT
CTGTGTTTTGAATTCTTTTCCTT

Coding sequence (CDS) from alignment at scaffold_258:228802..229824

>TCONS_00055756 ID=TCONS_00055756|Name=TCONS_00055756|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_258:228802..229824 (Clytia hemisphaerica)
AGTTATCTTGATGATTGAGGTTTCAGGAATGTTGGCTGCTTTCatctttt
tgacaaaaagttttcgACCACTATGATTAGTGATTTTCTTGCCTTTTTCG
ATGTTTGTACCTGAAATAATCTCTTTCATAAAGGTTGCAATCTTGTTTTT
GCCAACAGCAACGCTTTTAAACCAAGGTTCATCAACGTCTTTCGAATAAA
CAGATTTCGGTGAAAGATAAAAACGACCAGTGTTTTGTAGATTTGAAGGG
CGCTTTGAAACGTAAAAATTAAATATCCTGACAGGACATCTTTCATTGTC
AGGTATTTCAAACATCTTTGGATTTGTAACTCGAGGATTCGGGTGCAAAC
CGTGTTGACGTGTTTTTGTGGGAGGCTCAAAATACTCAATGTACACTAAT
CCACTTTCTTCGTCAGTTTTCGTTTGGAAATTTTCGATATTCAATGAAGC
ATGCTCTTGTTGGCCTCGTTGACCAAAGTGTTGAATGTTAAGGAACCATA
TTGTATGCAGCAGTGAAACTGGGTTCGATATTCCCAATTTTCCAGAACGC
CAAAGTTCATCTTCCTCATCCCTCGTAATAGCTTGACTAGCATTTGGACG
TTTCCCCATTCCATTTTGTCTAAACAAACGTGCTTTCCCTTCAAGagttt
tgatgcttttattGAATACAGTCTCATCCATGATAGACTTCGGATAGTTG
TTTTCTACAAGGTAACGATGAAGTCCTGCCTGCATTACACGTAAAGAGTC
TGGTTCATAATCATCTCCATCTCTCTTTCTGACTTCACCGTAGAACTGGC
ATAATACAGCATCCAATTCAGGAGGGCTGTACTCTTCCAACTGGACTTTC
ATATTTCTCTGAACAGCCCAGCTTTTGTAGACATTGATCCAAGTGTTCGT
ACTCCTTttagtgtttttgtttttcgattCTTCAgctatttttgaaagtt
cttctTCAGAAAGAAGTTGGAATCTAACACTTGTCTCCTCCATTTTCTTC
TGTGTTTTGAATTCTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035099XLOC_035099Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055756-proteinTCONS_00055756-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055756-exon-scaffold_258-1491911889:228802..229824TCONS_00055756-exon-scaffold_258-1491911889:228802..229824Clytia hemisphaericaexon
TCONS_00055756-exon-scaffold_258-1510915933:228802..229824TCONS_00055756-exon-scaffold_258-1510915933:228802..229824Clytia hemisphaericaexon
TCONS_00055756-exon-scaffold_258-1575043694:228802..229824TCONS_00055756-exon-scaffold_258-1575043694:228802..229824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:228802..229824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.93961	1.43981	2.07328	2.99016	0.440733	0.454933	0.927295	0.406378	0.0579733	0.0602058	0	0.0265591	0	0.0335356	0	0	0	0	0.0499731	0	1.63781	2.17168	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021893DUF3504
Blast
[Close]
BLAST of TCONS_00055756 vs. Swiss-Prot (Human)
Match: ZMYM3 (Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.671e-22
Identity = 70/253 (27.67%), Postives = 125/253 (49.41%), Query Frame = 3 
Query:  195 SPPELDAVLCQFYGEVRKRDGDDYEPDSLRVMQAGLHRYLVENNYPKSIMDETVFNKSIKTLEGKARLFRQNGMGKRPNASQAITRDEEDELWRSGKLGISNPVSLLHTIWFLNIQHFGQRGQQEHASLNIENFQTKTDE------ESGLVYIEYFEP--PTKTRQHGLHPNPRVTNPKMFEIPDNE----RCPVRIFNFYVSKRPSNLQNTGR-FYLSPKSVYSKDVDEP-WFKSVAVGKNKIATFMKEIIS 911
            S  EL+  L QF  E+ + +G+ YEPDS+  +  G+ +YL+ENN   +I  +  +   ++ L      ++   +   PN +   +R EE+ LW   +LG+ +P  LL+T+ F N + FG +  +EH  L+  N   ++ +       + +V I Y+ P    K R  G     R     + E  +N     RCPV+ + FY+SK P +L+     FYL P+   S   + P W+  + + ++ + + +  I++
Sbjct: 1107 SAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLL---PN-NTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKVVSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPER--SCIAESPLWYSVIPMDRSMLESMLNRILA 1353
The following BLAST results are available for this feature:
BLAST of TCONS_00055756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZMYM31.671e-2227.67Zinc finger MYM-type protein 3 OS=Homo sapiens GN=... [more]
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