TCONS_00055631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055631
Unique NameTCONS_00055631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055631 ID=TCONS_00055631|Name=TCONS_00055631|organism=Clytia hemisphaerica|type=transcript|length=1091bp
GGTGAATCTGGCCTGGGTACTAGATTAAGATTCCTTTAACACTGGTATTT
ATGCAAGACCATGAAAAATTCTTCCATCACTTCAAGATGAATATGAAGCT
GTTAACCCTTCTTGTGGCTTTACTGCCATTACTAGTGGCAACAAACGACA
CAACTCAAATGAAAGCACAAATCCAAGCCTTGACAACATTGGTTAGTCAA
CAAGGACAACTGATTCAAAAGCTTGTGAAGAAAGACAGAACAAGGGATGG
ATATTGTCAATTCAAAGTGAATCCATGTGGTGATTGTATGTGTTTTGAAG
ATTTGAGGATGGTTGAGAAATACTACTGTGATTGTCGTGAAAAACCAATT
CGCCGTGATTGCAAGGAGCATTATGATCAAGGAGAGCGTACCAACGGTAT
ATATCGTATCAACAAAAACCTCAAGATTCTCATGATTCAAGTTTTCTGTG
ATCAAACAACTGATGGTGGAGGCTGGACTGTTGTTCAGCGCCGTGTCGAT
GGCTCAGATAATTTCCTTCGAAACTGGGCAGAATACAGAGTAGGATTTGG
GCTTCTCCACAGGGAGCATTTTCTCGGAAACCGTAACATTTATCTGCTGA
CAGCCCAAGCTTACTGGAAAGGATCGGAACTCCGTGTTGATATGGTATCA
AAAGGTTCTTCATCTAGACTGTGGGCCAAATATTCAAGCTTCGAGGTTAA
TAACGAGGCTAGTGGATTTGAGCTTCACGTGTCAGGCTACAGTGGGAATG
CATTAGATCGTTTGACGTACCAACACGGCATGAAATTCACCACATATGAT
AAGGAGCATGATAATTGGTCTGGCGGCAACTGTGCTATTCGTAATGCAGG
AGGCTGGTGGTATGACGATTGTGCGACTGCAAATTTGAATGGAAATTACG
ACCAGTTCCAATCCATTGCACAATCGTGTTCTTCTGATTGCAGTTCTGTA
TTTTGGCAACCTTATCATTTGAAATATTCTGAGATGAAAATCCGACGGGT
TTAATCATCAACTACACCAAAAACGGATGACATTTGGTTATAATTAacat
tacttttattttatttggcAACGCGGTGGTGTTTTATTGGG
Run BLAST on NCBI

protein sequence of TCONS_00055631-protein

>TCONS_00055631-protein ID=TCONS_00055631-protein|Name=TCONS_00055631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
MQDHEKFFHHFKMNMKLLTLLVALLPLLVATNDTTQMKAQIQALTTLVSQ
QGQLIQKLVKKDRTRDGYCQFKVNPCGDCMCFEDLRMVEKYYCDCREKPI
RRDCKEHYDQGERTNGIYRINKNLKILMIQVFCDQTTDGGGWTVVQRRVD
GSDNFLRNWAEYRVGFGLLHREHFLGNRNIYLLTAQAYWKGSELRVDMVS
KGSSSRLWAKYSSFEVNNEASGFELHVSGYSGNALDRLTYQHGMKFTTYD
KEHDNWSGGNCAIRNAGGWWYDDCATANLNGNYDQFQSIAQSCSSDCSSV
FWQPYHLKYSEMKIRRV
Run BLAST on NCBI

transcript from alignment at scaffold_253:952183..953273

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055631 ID=TCONS_00055631|Name=TCONS_00055631|organism=Clytia hemisphaerica|type=transcript|length=1091bp|location=Sequence derived from alignment at scaffold_253:952183..953273 (Clytia hemisphaerica)
CCCAATAAAACACCACCGCGTTgccaaataaaataaaagtaatgtTAATT
ATAACCAAATGTCATCCGTTTTTGGTGTAGTTGATGATTAAACCCGTCGG
ATTTTCATCTCAGAATATTTCAAATGATAAGGTTGCCAAAATACAGAACT
GCAATCAGAAGAACACGATTGTGCAATGGATTGGAACTGGTCGTAATTTC
CATTCAAATTTGCAGTCGCACAATCGTCATACCACCAGCCTCCTGCATTA
CGAATAGCACAGTTGCCGCCAGACCAATTATCATGCTCCTTATCATATGT
GGTGAATTTCATGCCGTGTTGGTACGTCAAACGATCTAATGCATTCCCAC
TGTAGCCTGACACGTGAAGCTCAAATCCACTAGCCTCGTTATTAACCTCG
AAGCTTGAATATTTGGCCCACAGTCTAGATGAAGAACCTTTTGATACCAT
ATCAACACGGAGTTCCGATCCTTTCCAGTAAGCTTGGGCTGTCAGCAGAT
AAATGTTACGGTTTCCGAGAAAATGCTCCCTGTGGAGAAGCCCAAATCCT
ACTCTGTATTCTGCCCAGTTTCGAAGGAAATTATCTGAGCCATCGACACG
GCGCTGAACAACAGTCCAGCCTCCACCATCAGTTGTTTGATCACAGAAAA
CTTGAATCATGAGAATCTTGAGGTTTTTGTTGATACGATATATACCGTTG
GTACGCTCTCCTTGATCATAATGCTCCTTGCAATCACGGCGAATTGGTTT
TTCACGACAATCACAGTAGTATTTCTCAACCATCCTCAAATCTTCAAAAC
ACATACAATCACCACATGGATTCACTTTGAATTGACAATATCCATCCCTT
GTTCTGTCTTTCTTCACAAGCTTTTGAATCAGTTGTCCTTGTTGACTAAC
CAATGTTGTCAAGGCTTGGATTTGTGCTTTCATTTGAGTTGTGTCGTTTG
TTGCCACTAGTAATGGCAGTAAAGCCACAAGAAGGGTTAACAGCTTCATA
TTCATCTTGAAGTGATGGAAGAATTTTTCATGGTCTTGCATAAATACCAG
TGTTAAAGGAATCTTAATCTAGTACCCAGGCCAGATTCACC

Coding sequence (CDS) from alignment at scaffold_253:952183..953273

>TCONS_00055631 ID=TCONS_00055631|Name=TCONS_00055631|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_253:952183..953273 (Clytia hemisphaerica)
TTAAACCCGTCGGATTTTCATCTCAGAATATTTCAAATGATAAGGTTGCC
AAAATACAGAACTGCAATCAGAAGAACACGATTGTGCAATGGATTGGAAC
TGGTCGTAATTTCCATTCAAATTTGCAGTCGCACAATCGTCATACCACCA
GCCTCCTGCATTACGAATAGCACAGTTGCCGCCAGACCAATTATCATGCT
CCTTATCATATGTGGTGAATTTCATGCCGTGTTGGTACGTCAAACGATCT
AATGCATTCCCACTGTAGCCTGACACGTGAAGCTCAAATCCACTAGCCTC
GTTATTAACCTCGAAGCTTGAATATTTGGCCCACAGTCTAGATGAAGAAC
CTTTTGATACCATATCAACACGGAGTTCCGATCCTTTCCAGTAAGCTTGG
GCTGTCAGCAGATAAATGTTACGGTTTCCGAGAAAATGCTCCCTGTGGAG
AAGCCCAAATCCTACTCTGTATTCTGCCCAGTTTCGAAGGAAATTATCTG
AGCCATCGACACGGCGCTGAACAACAGTCCAGCCTCCACCATCAGTTGTT
TGATCACAGAAAACTTGAATCATGAGAATCTTGAGGTTTTTGTTGATACG
ATATATACCGTTGGTACGCTCTCCTTGATCATAATGCTCCTTGCAATCAC
GGCGAATTGGTTTTTCACGACAATCACAGTAGTATTTCTCAACCATCCTC
AAATCTTCAAAACACATACAATCACCACATGGATTCACTTTGAATTGACA
ATATCCATCCCTTGTTCTGTCTTTCTTCACAAGCTTTTGAATCAGTTGTC
CTTGTTGACTAACCAATGTTGTCAAGGCTTGGATTTGTGCTTTCATTTGA
GTTGTGTCGTTTGTTGCCACTAGTAATGGCAGTAAAGCCACAAGAAGGGT
TAACAGCTTCATATTCATCTTGAAGTGATGGAAGAATTTTTCATGGTCTT
GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035003XLOC_035003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055631-proteinTCONS_00055631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055631-exon-scaffold_253-1491911889:952183..953273TCONS_00055631-exon-scaffold_253-1491911889:952183..953273Clytia hemisphaericaexon
TCONS_00055631-exon-scaffold_253-1510915933:952183..953273TCONS_00055631-exon-scaffold_253-1510915933:952183..953273Clytia hemisphaericaexon
TCONS_00055631-exon-scaffold_253-1575043694:952183..953273TCONS_00055631-exon-scaffold_253-1575043694:952183..953273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:952183..953273 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0804484	0.1569	0.0455439	0.267346	0.108489	0.171459	0.155144	0.0968291	0.0338962	0.0419859	0.48903	0.0267891	3.665	3.52832	37.984	64.2936	1.93255	1.7951	5.72973	7.6513	0.116673	0.170727	0.415082	0.58702	2.41847	1.27193	0.0551554	0.0588633	0.803623	0.59133
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
IPR020837Fibrinogen_CS
Blast
[Close]
BLAST of TCONS_00055631 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.945e-45
Identity = 115/298 (38.59%), Postives = 154/298 (51.68%), Query Frame = 3 
Query:  174 QALTTLVSQQGQLIQKLVKKDRTRDGYCQFKVNPCGDCM-CFEDLRMV--EKYYCDCREKPIR-------------RDCKEHYDQGERTNGIYRINKNLKILMIQVFCDQTTDGGGWTVVQRRVDGSDNFLRNWAEYRVGFGLLHREHFLGNRNIYLLTAQAYWKGSELRVDMVSKGSSSRLWAKYSS-----FEVNNEASGFELHVSGYSGNALDRLTYQHGMKFTTYDKEHDNWSGGNCAIRNAGGWWYDDCATANLNGNYDQFQSIAQXXXXX-XXXVFWQPYHLKYSEMKIRRV 1001
            Q L+ L S+QG+LIQ L +      G+    VN   D +   +  R +   +   D +  P R             RDC +    G++ +G+Y +         QV+CD  TDGGGWTV QRR DGS NF R W  YR GFG L  EH+LG + I+ LT QA +   EL VD+     +   +A+Y S     F V+ E  G+ L V+ YSG A D L    GM+FTT D++ D+ S  NCA    G WWY +C T+NLNG Y +    + +   +  S   WQ Y LK+SEMKIR V
Sbjct:  170 QGLSALQSEQGRLIQLLSESQ----GHMAHLVNSVSDILDALQRDRGLGRPRNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAY---ELHVDL-EDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDH-SENNCAAFYRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQ-YSLKFSEMKIRPV 457
The following BLAST results are available for this feature:
BLAST of TCONS_00055631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD11.945e-4538.59Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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