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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055514 ID=TCONS_00055514|Name=TCONS_00055514|organism=Clytia hemisphaerica|type=transcript|length=6534bpRun BLAST on NCBI protein sequence of TCONS_00055514-protein >TCONS_00055514-protein ID=TCONS_00055514-protein|Name=TCONS_00055514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1193bp MSRYTVNFRMLLVTLALVFFVQQALACGGGSSSCSWKTCRETYSAYSPNPRun BLAST on NCBI transcript from alignment at scaffold_253:497639..510928- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055514 ID=TCONS_00055514|Name=TCONS_00055514|organism=Clytia hemisphaerica|type=transcript|length=13290bp|location=Sequence derived from alignment at scaffold_253:497639..510928- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_253:497639..510928- >TCONS_00055514 ID=TCONS_00055514|Name=TCONS_00055514|organism=Clytia hemisphaerica|type=CDS|length=68058bp|location=Sequence derived from alignment at scaffold_253:497639..510928- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055514 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 201.06 bits (510), Expect = 3.215e-51 Identity = 179/648 (27.62%), Postives = 264/648 (40.74%), Query Frame = 3
Query: 3771 RAKEVTCPKLPLPANAIHLDAACDGANSKCTSSCRLECKAGYSLSGNK-YVTCHGSGQWNRA--QGSCVDSQQPNIKCPNIPQFGNKENENYQDIDLVEASATDNSGLSVKITTSHVF-PLRVYVGSPVEVTYTATDAAGNKKSCRKTYIVIDQESPKVTSCPEPYRLIRTGSFPHRVFWGDAQFHDNVDSANQLVHIPSHGNGSPFHKGRHTIVITARDRAFNKANCTFVVELEMVKCPVASPPKHGSAQCNVKKNGVKESFICTVSCKQGSWFLQGPNIPKLYNFYMCSMDGEWGGTNAYNMDNLTPSTVTKIPKGEPLWPDCSVGATPDGAVLEMQVF--GGKCTDQAAMDKLKQDFVATLQKDFILNYLFCI-THTQNCAIENIII--YCSKRKRRNADG-----------SQSDQMVIKFAFAVREK-----NMDTNKLNHLSANLEKEKSIILQNVKVAAP--------------KVLNDYSASVSVSQKAEISCEPGY------EYTIPEGTSQ-----------------KKCLKCPLGTYFDSASRTCEVCEHGFYQDEEGAKACKKCPQGTSTSGSLGIDFHDCKAICRPGTYSENGLATCLACPIATYQPLSGSSSCIACPGGKVTDTVGAAQLDDC 5528
R E C +P + I C +K + C + C+ G+ LSG K + C SG+WN C D + P I CP + E ++ ++ +A DNSG V + F P ++ V + YTATD +GN+ SC VID E P + C P ++ H W + QF DN S +LV SH G F +G + TA D + N C + ++ C + P +G C GV CT++C +G F +G +Y DG W P+ T+ WPDC+ + ++F +C D M K + F TL K + FC +C +E + YC + +G ++ D F V+E N ++++ SA L K ++ N+ + P + L +++ K ++ +P Y E I + S + C+ CPLGTY++ TCE C G YQDEEG CK CP G T + DCKA C+ GTYS +GL TC +CP+ TYQP GS SC++CP T GA + C
Sbjct: 492 RCVERHCSTFQMPKDVIISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQINCPKDIEAKTLEQQDSANVTWQIPTAKDNSGEKVSVHVHPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWCRSP-PPVQVSEKVHAASWDEPQFSDN--SGAELVITRSHTQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTPDNTGVN----CTLTCLEGYDFTEG----STDKYYCAYEDGVW-----------KPTYTTE-------WPDCAKKRFANHGFKSFEMFYKAARCDDTDLMKKFSEAFETTLGK---MVPSFCSDAEDIDCRLEENLTKKYCLEYNYDYENGFAIGPGGWGAANRLDYSYDDFLDTVQETATSIGNAKSSRIKR-SAPLSDYKIKLIFNITASVPLPDERNDTLEWENQQRLLQTLETITNKLKRTLNKDPMYSFQLASEILIADSNSLETKKASPFCRPGSVLRGRMCVNCPLGTYYNLEHFTCESCRIGSYQDEEGQLECKLCPSGMYTEYIHSRNISDCKAQCKQGTYSYSGLETCESCPLGTYQPKFGSRSCLSCPENTSTVKRGAVNISAC 1106 The following BLAST results are available for this feature:
BLAST of TCONS_00055514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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