|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055026 ID=TCONS_00055026|Name=TCONS_00055026|organism=Clytia hemisphaerica|type=transcript|length=1179bp
aaatttttcatccTTTGTCatcctttttgatttttgaaattcgtGGAATA
CAAGAGGACAGCCAATGAGGGAGAGAagTAAAGGTAGACATACCGTGAAC
GAAAACCAACCGCCAAGATGGGGATTGGTATAATGATAAACGCGAATGCG
CAAGAAATTGTGGATATGCTTGTTGAAGTCATAACTTTATTATTGAATCA
ACACATGGGTTTATTAATGATCCTCGGCGTCGGTGCCGTGGTCggaattt
ttttattacttgTTTTTGGTGTTTGTTTTGGTATGTGTTGTTACGCATGC
ACGAAGCGCCGCTCAAAGAGGCTTTGTAAATGTTGTTTGCGTTTATGTTG
GGTGGGCTGCGGTTGCGGAGATAAATTCAACTTTGAAGAAGGAGGCGATG
CCAGAGATGAAGAGGAGAGATATATGATGGGAAACGGGAAATTAGGAGGA
AAGCATTCCTCCAAAACCTCCCTGAACTCTTACAACCATCACGATAAAGA
TGGACGTATCACGCCTGTATAATCACCGGTGCGCGATTTATAGATAGCAA
TAAGACTTTTTTTTGTAGATTTACCTTCAgaccagagatttgggaaaaga
ggataagaaatgcgctattcatctatttgaagctaggctgtagaatcttt
tgtttctattgaaatgtctgcGGCCGATCGATTGTTTTTATTCTGGACCA
ATCAGAGCGCTTGATTCGTTATGCGCACAAGACTAGAAGTACAgacaaaa
aatggcagccgtgattgatatcgaaagtgaaataattttttttttaaatc
gcgaattttgatattttttataagcacttttcacTTTGAACGCAGTGTTT
CTCAAGCCATCGTCGTTGTGCCTGAAGGGAAGATTTCCCAgctttgacca
aaatattttccttatagAATGATCGAAtcaatttgatcaatttatacATA
CTGTagctaaaagaattgaaattcacattataaaaccaaaaatgaTAAGC
TTGTAAAACTAGGATaatttttggttatttcttGAAACTCTAGTCTAAGA
AACATACATTACGTCATCAAATACATTACGTCAAATACTTTTTTGCATCA
AGACGTCTTTTTTTAAGTTGGCGAATCTCGCAAGGAAAATGGaggaaaaa
atcgatgaaaatgaccaagaaTTGCCGCT Run BLAST on NCBI protein sequence of TCONS_00055026-protein >TCONS_00055026-protein ID=TCONS_00055026-protein|Name=TCONS_00055026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MGIGIMINANAQEIVDMLVEVITLLLNQHMGLLMILGVGAVVGIFLLLVF
GVCFGMCCYACTKRRSKRLCKCCLRLCWVGCGCGDKFNFEEGGDARDEEE
RYMMGNGKLGGKHSSKTSLNSYNHHDKDGRITPV Run BLAST on NCBI transcript from alignment at scaffold_248:111728..119139- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055026 ID=TCONS_00055026|Name=TCONS_00055026|organism=Clytia hemisphaerica|type=transcript|length=7412bp|location=Sequence derived from alignment at scaffold_248:111728..119139- (Clytia hemisphaerica)
AAATTTTTCATCCTTTGTCATCCTTTTTGATTTTTGAAATTCGTGGAATA
CAAGAGGACAGCCAATGAGGGAGAGAGTAAGTGGATGTTGCTTTGTTTCA
TTTGTTTTCAAACTTGTAATTGCTTTTTGTTTGCTTTTGACCTAAAATTG
TATGTATAAGGAGTTTTCTTGATCGTTTAAAGTAAGATAGATGAGAGTTG
CATTGATTAAATGAGTACTGGGTATAAGAATGATACTGACAAGAAAAATC
CTTGGGTTCTGCTGTTATTTGCTGTTGTTTTGTAGATTTCAGTTTGAATG
AGCATGTTACTGTGATTTAAACAATTCAAAGGAAGTTCTAGTTAAAATTA
GTGTCTCTCAGGGCAATAATTATATAGCAATCTTCTTGGATTGAAATCTA
GTTTCACTGTAGTAGATTTCAAGATTATATTATGTTTTCATGTAAATGAA
CACTAACGGGTTGTGAAATTTTCAACGTGACACGTTCTCGAGTTTCTTTT
GAAACATTTGTAGACACCATGGGTCAAGTTTGTGTGTTCTTTTTCTGTGA
TCTGTTTTTACAGTATACGTACAATTTCTCGTTTCTGGATACTGTAGTGG
CCGTAGTGTAGGTTGGATACTTCTTAACTTCTTATATGACTTTAAAAGGA
TTGATTCAGTTTTTCAGTGTGATTCTAATGTTCCTTTTTTTGAAGAAGAG
TGAAAATTGACGATCAGGATCCATGCTCATCTGTTTATTTAATTATTTTT
CCACTCTACCTGAAAGTTGTCTTTACTGTGCAGCATTTTTTGAGAAGTTA
TTGTATGAAATGCTTTTTAGAGTCATTTGTAAGTCATTTGTAAGAAGGCT
GACTCTTAGATGATGGCATTAATATCTTTAGTACTGTAGGTTNAAACATT
AAGGCTGACTTAAGACTTTCATATAATGGTATTCTTTAAAAACATTTTAA
TACTGTTATAAGTTAAACGAGAACGTCATATCTACCTTTAGAACTTTAAT
TCCCAAAAATACCCTTATTAGGCTCAAAATCGCCAACAATAAGAACAATT
CAAGAACAATTCTGAGCCTGGTATCACTCTATTTCAAGCAATTTAGGGGT
CAATGAAGTAAAAATTGGGTATAAAGCGAAAAATGCCTCAATTTCACCAT
AAATAAGAACAGGATAAGAACAATTTGAGGCTCAAAAGGCCAAAAAAAAA
TAAGAACAGTCACGCCTCATAAAAGATTAACTGGTTCTTATTAAAAAAAA
TAGTGTTCTGGTTGAGTTATTGACCTGATTATTGTCACATCTAAGCAATA
AAGTTTTTGTCCTTATAAAAAAGTGTTCGTTAAAGTCACATGACAGACAT
GCTATGAAAGGAATCTCATACTTACCACACACTGACTGAGTAACTGACAA
CACAAAAATATTCTTTTCTGGTACCATTATTTCACAAAGCTTAAATACAC
GTTTTTTATAAGAACAAACTATGCAAGAACATAATACTTCGACGATGACC
AAAATATTAAAAATAAGCTAAGAACATTTTAAGACTTTGCGGACTCTAAA
ATACCTTATATTTCAAACAAAAACACTCCCAAAATGTTGAAAATAAGAAC
ATTTTAAGAACATTTTTAGGCTTGAAACACAAAAAGTTAAGAACATCCAA
ATGCTTCAAACATTTTGGATGTTCTTATAAAAAACGTGTAAAATTATTAA
TCATGTTTAATCTGATCAGTGTCAGCATTTGATGGGTACAAAACAATCTT
TCTATTTTTATTTTAACTTTTTACTATAATACTCTCTTAGAATTGATGGT
TATACAGTCTCGTTAATGCAACTTTTGTTTTAGAGAGTTGTATCTAACGT
TTAGGATGTAAGAGTATTAAGATGGAGTTCCTTGTTGTATCTTTCGAAAA
ATTCTTTTTTGTAGATCTTTTACCCGTGTCTCCCAAGGTCATTAGATCCT
CTTGATTTTGGCTACATAGTTCTCTGTCGTTCAAAAGGGAAAGAAACACA
CATGCTTTAGGGACAGAGCCAGAGATGAGATGATCAATACAGAATCTTTG
AATCTGAATATGTCAAGATTGTTTTTGTTCTTAAAGCCTTAAAAAGTCCT
TTTAAACTTTTTCAAAAAAAACGAAGGAACAATTAAACCTTGAAGCAAAC
AAAAGTAACAAAATTTTGAGGTTAACTTGTATTGGCAAGTTTGCCAAATA
TTTTTCCTCCCTTTTTCTTGTCGTTTTTTTTTGGAGTGAATTTTAAAGTC
CAAACGACGAATCACTTAAACAGATCAACACTTAACAAATTAAAAAATCG
AAAAGGCTGTCCTTTGTTTCTAAAATGATGTTTTGGAAGTAAACAACACG
TAAACATTAGCATAAACAAAAACATTTTTGCCAAAGTTTATTGAAGCTTT
TTTAAATGACTTGTGTGTAGCTTGGATTCTACTATATTGTAAATTCAGAA
TGTAGAAAGTCAGAATGTTTGCATGTCAGACTCCTATTGCTGTTCAATCA
AACTCTTTTCAAGACTTTGAATTGATTTGCTCAAGATCTTTTTCTGAGCT
TGTTCTTAAGTTTTTTGAGCCTCGTTTTTGTTGAATAAGAGTGTTTATGC
CAATACAAGTATGTCAGCGACGTTGTCCACACAAACTCGACCCCAATATT
CTATATACTTCATACTCCAATATACTTTGTGCGATGGTAAATTCAACCCC
AATATTATATCTTGGTGCGATGGCTGATAAATGTAGTTGAGTTGATACTA
ATAGATACTTAGGCTTGTATGGCTATCATAACATTCTCCTCTATCATCAG
TGAATTTACACTGACAAAACCTTTGCCTTTTAATGGCTTCTCTTCATACT
TTAAGTACCCCCTTGCAATTATTTCACCATTTCTCTTCTGTTGTTTAAGA
GTTGGTTGCTATGGCAACAAAGTCTTTGAAAGTCACTTGAACTTTGGTTC
AGCCAGCCTCATTTAAAAAATGTCAAGCTCAAAAAGCGGAAAATTGATTT
ATTTTAGTTTGGAAATAGAAGGGGAAATTTACAATATGGTTTTCCTAAGT
ATTTGCTTACTGCTTTTCTTTTTGTCAGTGTACTGTACATACAGGGTATC
CGGAAAAAAAATTATCAAGTCGTACACGTTTTTTTTATAAGAACAAACTA
TATAAGAATATAAGGCTTTGAGGCCCAAAAATTTAAGAACATTCTAAGAA
CATACTAAGGCTTTGGAGACTTAAAAACATGCAATTTCTTAAGAAATTAC
ATCAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGA
ACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCC
GAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAACGTGTACTGTA
CATATATGAAAAAATGTGTTGTCCTTGCCGAGTTGGGTGGTGCCAGAAAA
TTATTATTGTAATTTTCATGGGTAATTTTCTAACAGTCTCATTACAAATC
ATTCATGAAATAAACGTGTCTTGATGAGGCGCATTTTTGAGTTAATTAAA
CACAATTTCTTTTGATTCAGTGAGTAATTAATGCGGCCAACTAATTTATT
TTTAATTTCCATTCAATCACGATTTTGAAGGAGTTCAGACATTTTGCACT
CTGCTCTTTCGTTGTATTGCACTTTGACGCAACAAGGAGGTTTGTGGGAG
AAGTACAGTTGGCGCTCTCTAATTCGATTTTCAAGGGGAATTGGATATTC
ATCTTAATCAAATATTTTTTGAAAATGAAAGTTGATTTTTGAAAAAATGC
TGATGCAGCACTTTTTTTTCTTATTGTTTCCACAGTTGGTTGAACATAGT
AAACATTTTGAATGAAACACAAAAAGTTTAAAGATTACCGCTCGCTCCTT
TCTTTTGTTCGTTTTATTGTTCGCAGCTTATACTTATGTGTGTTCTGTTT
TTCTCTCAAGTAGAGATGTTGTATCTCTCGACTGGAGCTTCTAATAATTT
CACATGGAACTATATCGAGGGAAAGAAGTTAATGTCGAGAGACAATTTTC
GGTCAACGAAGTCACATTCTGACTCTTGAATGGTTTTTTATTTAAGATTT
TTTCAAATGGAAATTTGTTGCAATCAAAATATCTTGAATATTATTTTCAC
TTCAGATTTGGTGAAGTTTTGTGTCAATGATCTAGGATGTATGTACCTCC
CGATGATTTAAGTTAGAATAGACTGCTCAAAATAAAGTAACAAATTATTT
TTCTGTCGTTTAGTCTAATAGGTATTTTATGTGCACCTCAATAAAAGTTG
ATAAAAGTTTTAACTCGTCAATCCAATTTTTCTCTTGTCATTTCTTAAAG
ATAGAATCGACTTAGGTACTTTATAGGAACAATCTTTTCTTTCTGAGGCA
AAATATTTAGACTTGCCTTGACGTAAATGCTCTTTTTAATTGTGAGAAAT
TGTGACTTTAAGATATTTCTGAGTAGTGCGGTTTTTAAACTCTTTCTTGT
ACCTGGTCTTTTGTGGAATTGGAACAACCTAAGAATTGTCCTCAAGCTGT
TCTAAGCTTCGAGCCACATATTAGTCTTGTGTTCTTACAAAGATGTTCTT
AAGAAAACAAGGTAAATCCTTTGAGTGTTCATCCATTCAGCTCACAAAAA
ATCTAATTACGAGATCAAAAGAAAATATTAACAAGTTATCAAATTGCAAT
ACAGTGATGTTGAAGTTTGATGTTGATTTTTTTTTCATTGTCTTTCTGTT
ATTATAATACTTTTTTATTGTGTGTAGGGTACGTTTGCTTTTTTGAAATT
AGAGTGGACATCTCACAGTCTGTGATTGAAAGACATTTTAGAGCGTTCGC
TGTTTTATTTACTTCTTGATGATGTGGGCATTATCATTAAGTTGAGAGTT
TGTTTTTTGTGTCTTTGAATTTAATTTTACTCAATGTGATTTATGGATTT
GTCAACGAGTTTTATTCATTGTAGTCAGCTATTCAAATGTGAAGTTTTTT
TGGTTAATGATTTTTTGGGCTTTCTACTATTTTCACTCTCATTTTTTCAA
GACCATAGAATTTCCACAGATTCGGAAACTAATTATTGGTTAACGAAGCA
TTTTAAATCATCTCCCTTTATTTTGTTGCATGATCATTTAAGAATTTTGA
TTCGCTGAAAATTCTTCCCTTTTGCAATTTTTTCAGAATTTTAGTTTTTA
TTCTATAGCACAGTTTTGTTAGGATTTGAGTCAGTTCAGGAAATCGAAAA
TGAAAGTATCATATCTCGAAGGAAGAATTCGCATTCAAAGTTTCACATCA
GCACTGCTTAGTTTAGCTTAGGATTTGGCCCACACCTGACTTCAGACATC
TATTCTGGACTGCATACATTTTGCTATTTTTTTCTTATTGTATCTGTCTA
AAAGTATTTTTACGTATTTTTTGCGCATGCTCTGTATGTCTTTTGTTTTA
TCTGAGTCAGTCAATTTCGAACTACGACTCCAAAGCTTGAAATGTTTAAT
TGTTATAATGGAAGTTTATAATTACTCAGTTCTCAGTTATACACTCCGTA
TTTTATTTGAAAGTTTCTCAATGGACAGTAACAGGCTAATTTGCATTTGA
TACCTCAAAGTTAGATCAGACATATCAGTGGAGAGTTATTTTTGCCCGAT
CCATACTTTGATGAGATAGAAGTAGCTTTCATAGACTTCAAACAGCACTA
TTTTCTTGTCCTTGGTTTATCCATATTTCAGAAAGTGAAAATTTGACTTT
TTTCCATTCTATTATAGAAGAGTTATTTGTTTGGAGGCTGTGNAAATTTG
ACTTTTTTACATTCTGTTATAGAAGAGTTATTTGTTTGAAGGCTGTTAAA
GCTCCCCATCACTTATGAAAATAACCCCGATTGACGGTTTAGGGAAGGCA
AGATGTCTGTTCCTTTCATCTTCGAAAAAACTGACTATGATCTTCTTTTC
TTTGTTTAGAGTAAAGGTAGACATACCGTGAACGAAAACCAACCGCCAAG
ATGGGGATTGGTATAATGATAAACGCGAATGCGCAAGAAATTGTGGATAT
GCTTGTTGAAGTCATAACTTTATTATTGAATCAACACATGGGTTTATTAA
TGATCCTCGGCGTCGGTGCCGTGGTCGGAATTTTTTTATTACTTGTTTTT
GGTGTTTGTTTTGGTATGTGTTGTTACGCATGCACGAAGCGCCGCTCAAA
GAGGCTTTGTAAATGTTGTTTGCGTTTATGTTGGGTGGGCTGCGGTTGCG
GAGATAAATTCAACTTTGAAGAAGGAGGCGATGCCAGAGATGAAGAGGAG
AGATATATGATGGGAAACGGGAAATTAGGAGGAAAGCATTCCTCCAAAAC
CTCCCTGAACTCTTACAACCATCACGATAAAGATGGACGTATCACGCCTG
TATAATCACCGGTGCGCGATTTATAGATAGCAATAAGACTTTTTTTTGTA
GATTTACCTTCAGACCAGAGATTTGGGAAAAGAGGATAAGAAATGCGCTA
TTCATCTATTTGAAGCTAGGCTGTAGAATCTTTTGTTTCTATTGAAATGT
CTGCGGCCGATCGATTGTTTTTATTCTGGACCAATCAGAGCGCTTGATTC
GTTATGCGCACAAGACTAGAAGTACAGACAAAAAATGGCAGCCGTGATTG
ATATCGAAAGTGAAATAATTTTTTTTTTAAATCGCGAATTTTGATATTTT
TTATAAGCACTTTTCACTTTGAACGCAGTGTTTCTCAAGCCATCGTCGTT
GTGCCTGAAGGGAAGATTTCCCAGCTTTGACCAAAATATTTTCCTTATAG
AATGATCGAATCAATTTGATCAATTTATACATACTGTAGCTAAAAGAATT
GAAATTCACATTATAAAACCAAAAATGATAAGCTTGTAAAACTAGGATAA
TTTTTGGTTATTTCTTGAAACTCTAGTCTAAGAAACATACATTACGTCAT
CAAATACATTACGTCAAATACTTTTTTGCATCAAGACGTCTTTTTTTAAG
TTGGCGAATCTCGCAAGGAAAATGGAGGAAAAAATCGATGAAAATGACCA
AGAATTGCCGCT Coding sequence (CDS) from alignment at scaffold_248:111728..119139- >TCONS_00055026 ID=TCONS_00055026|Name=TCONS_00055026|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_248:111728..119139- (Clytia hemisphaerica)
ATGGGGATTGGTATAATGATAAACGCGAATGCGCAAGAAATTGTGGATAT
GCTTGTTGAAGTCATAACTTTATTATTGAATCAACACATGGGTTTATTAA
TGATCCTCGGCGTCGGTGCCGTGGTCGGAATTTTTTTATTACTTGTTTTT
GGTGTTTGTTTTGGTATGTGTTGTTACGCATGCACGAAGCGCCGCTCAAA
GAGGCTTTGTAAATGTTGTTTGCGTTTATGTTGGGTGGGCTGCGGTTGCG
GAGATAAATTCAACTTTGAAGAAGGAGGCGATGCCAGAGATGAAGAGGAG
AGATATATGATGGGAAACGGGAAATTAGGAGGAAAGCATTCCTCCAAAAC
CTCCCTGAACTCTTACAACCATCACGATAAAGATGGACGTATCACGCCTG
TATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055026-exon-scaffold_248-1575043694:119064..119139 | TCONS_00055026-exon-scaffold_248-1575043694:119064..119139 | Clytia hemisphaerica | exon |
| TCONS_00055026-exon-scaffold_248-1575043694:111728..112830 | TCONS_00055026-exon-scaffold_248-1575043694:111728..112830 | Clytia hemisphaerica | exon |
| TCONS_00055026-exon-scaffold_248-1510915933:119064..119139 | TCONS_00055026-exon-scaffold_248-1510915933:119064..119139 | Clytia hemisphaerica | exon |
| TCONS_00055026-exon-scaffold_248-1510915933:111728..112830 | TCONS_00055026-exon-scaffold_248-1510915933:111728..112830 | Clytia hemisphaerica | exon |
| TCONS_00055026-exon-scaffold_248-1491911889:119064..119139 | TCONS_00055026-exon-scaffold_248-1491911889:119064..119139 | Clytia hemisphaerica | exon |
| TCONS_00055026-exon-scaffold_248-1491911889:111728..112830 | TCONS_00055026-exon-scaffold_248-1491911889:111728..112830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:111728..119139 - |
Blast
The following BLAST results are available for this feature:
|
