|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054917 ID=TCONS_00054917|Name=TCONS_00054917|organism=Clytia hemisphaerica|type=transcript|length=1539bp
NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA
AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT
AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC
CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC
ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA
ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA
CACTAAAGCTGAAGCCTGTGAATTTTATACGTCctgtaaagaacattttt
ctgaagCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAacgaaatctgaaaaaacttttaaaggagAGAATCAAGTCCTCGACAAA
TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGTTACAATATT
GTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCTGATGA
AAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACTGGGAA
TCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATTCGTGT
GAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGGGTCGA
GGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTCGTTAT
CCCGTTTATTTCGGGTGACggccaaagttttaaaattcgTGAGAAACTTA
AAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATCAATCA
TCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGAATACC
AATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTACAGAC
GCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCCCTTCC
GTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATTAGCTG
AACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAACGAAA
GATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGCAGACA
ACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATTCGAGG
GTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAACGTGT
CGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGGTCCGG
TATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAATCGTGG
ATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN Run BLAST on NCBI protein sequence of TCONS_00054917-protein >TCONS_00054917-protein ID=TCONS_00054917-protein|Name=TCONS_00054917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEQSYNIVRKYPDPDSCEIPQSDESHTIFSDGVEVPNLLGILDPXNIVRE
YPDPDSCEIPQSDESHTIFSDGVEVPNLLGILDPRRFGSLSRLFRVTAKV
LKFVRNLKHSVQNTRHDAEESINHLVNAKKLWILEVQKEYQSPRYDQLKR
SLDVFTDANGI Run BLAST on NCBI transcript from alignment at scaffold_246:294895..297388- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054917 ID=TCONS_00054917|Name=TCONS_00054917|organism=Clytia hemisphaerica|type=transcript|length=2494bp|location=Sequence derived from alignment at scaffold_246:294895..297388- (Clytia hemisphaerica)
NNTTTTATTTACCGCATCGACCAGTGTGCAGAGATGACCGTATAACTACA
AAGGTCAGAATGGTTTTCGATGCTAGCTCTTCGACGTATGGTCCTTCATT
AAATGACTGTTTGAATCCAGGACCTGCGGAATTCTCCTCCGTTTTCGTGC
CAAGAACATTGGTTTAGTTGCAGACATCGAGAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTCGTTCGTTTTTTATGGTTGAAAGAC
ACCAATGATATTGATTTTCAGAACTTTGATAACAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACTTCTTCACCGTTTCTATTAA
ATGGAACACTGAGATACCATATTAATAAGATAAAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCCTTACACGTCGACGACCTTACGACAAGTCTAGA
CACTAAAGCTGAAGCCTGTGAATTTTATACGTCCTGTAAAGAACATTTTT
CTGAAGCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAACGAAATCTGAAAAAACTTTTAAAGGAGAGAATCAAGTCCTCGACAAA
TGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATAA
GTTCTTTCTTAATTTCCAAAACTCGTTACACTCAGCTGAATTTTCGTTAC
CTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCTC
GGACTTATAAATCCTCTTATCGTGAAATTGAAAATTTTATTCCAAGATAT
TTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATTT
CTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAATTAAAGATATTATT
TTTCTGAGACCGTATTGTTATACTACAAATGATGATCCAGTCGCTTCTCG
TGAACTTCATGGATTCAGTGATGCTTCAAAAAGAGCATATGGTTGTTGTG
TTTATCTAAGAACTGAATTTGATTCTGGTCATGTAAGCACATCGTTAGTT
ACAGGCAAATCTCGTATTGCACCCATAAAGGGTAGTACTGTCCCCAAATT
AGAACTGTGTGGGGCTCAAATTTTAACTATCATCATCAATCAAGTGAAGT
CTGAACTGAAAGATACACTTTTTATTGAGAAAGTTTATGCTTGGATAGAC
TCCACCGTCGCTTACTGTTGGCTCAAAAACGAAAATAAAGTTTACAAACA
ATTTGTTCAAAATCGAGTAAATGAGATAAGAGGAAAATCAAAAACTTTTG
TTTGGAAACTAGTTGACACTTTACAAAATTCTGCTGATGATGTAACCCGG
GGTTTATTGTTATCTCAAATTGTACAAAATAAGAGGTGGTTGAATGGCCC
CGAATTTTTATCTCTCTCGCAAGAACACTGGCCAGACCTAAAGCCAGGTG
ATAACTTTTCAAAACAATCAGAACATTCTACAGAAACTGTTGATTTATTT
GCTGGGACTGAATTTGAATTCTCTGACCTTAATGATGAAGAGAAAGTTAC
TTGTTTAGCTGCTAACACTGCATTTAATCTCTTTTTATTCAACAGTTACA
ATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCT
GATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACT
GGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATT
CGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGG
GTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTC
GTTATCCCGTTTATTTCGGGTGACGGCCAAAGTTTTAAAATTCGTGAGAA
ACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATC
AATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGA
ATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTA
CAGACGCTAATGGTATTTGACGATGCAAAGGACGGCTAGGAAACGCACCC
CTTCCGTTCGACACGAAATTTCCAATTCTTATACCACGTGATTCGAGATT
AGCTGAACTGATTGTACTCGAATGTCACCAAACCGTTGGACATAACAAAA
CGAAAGATACCTTAAACGAAATTCGCTCACAATATTGGATTCCAAAAGGC
AGACAACTCGTCAAGAAACTGATAAACTCGTGTTTAGTTTGTCGATTATT
CGAGGGTAAGGAGGGTAATTTACCCTGACCTACCCAAGCTACCACCAGAA
CGTGTCGATCAAAGTTACGCGTTTGAGAATATCGGTATAGATTACGCTGG
TCCGGTATTCGTTCGAAACAATTTTGGTGATCAGAAAACTCTTTACAAAT
CGTGGATTGCTTTGATAACTTGTTACTCTACGCGAGCTGTATNN Coding sequence (CDS) from alignment at scaffold_246:294895..297388- >TCONS_00054917 ID=TCONS_00054917|Name=TCONS_00054917|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_246:294895..297388- (Clytia hemisphaerica)
TTACAATATTGTTCGTAAGTATCCTGATCCAGATTCGTGTGAAATACCAC
AATCTGATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTCCCGAAT
TTACTGGGAATCCTCGATCCANACAATATTGTTCGTGAGTATCCTGATCC
AGATTCGTGTGAAATACCACAATCTGATGAAAGTCATACAATTTTTAGTG
ATGGGGTCGAGGTCCCGAATTTACTGGGAATCCTCGATCCAAGAAGATTC
GGTTCGTTATCCCGTTTATTTCGGGTGACGGCCAAAGTTTTAAAATTCGT
GAGAAACTTAAAACATAGTGTTCAAAACACTAGGCACGATGCCGAAGAAT
CGATCAATCATCTAGTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAA
AAAGAATACCAATCACCGCGATACGATCAATTGAAACGAAGTCTGGACGT
TTTTACAGACGCTAATGGTATTTGAATGGAACAAAGTTACAATATTGTTC
GTAAGTATCCTGATCCAGATTCGTGTGAAATACCACAATCTGATGAAAGT
CATACAATTTTTAGTGATGGGGTCGAGGTCCCGAATTTACTGGGAATCCT
CGATCCANACAATATTGTTCGTGAGTATCCTGATCCAGATTCGTGTGAAA
TACCACAATCTGATGAAAGTCATACAATTTTTAGTGATGGGGTCGAGGTC
CCGAATTTACTGGGAATCCTCGATCCAAGAAGATTCGGTTCGTTATCCCG
TTTATTTCGGGTGACGGCCAAAGTTTTAAAATTCGTGAGAAACTTAAAAC
ATAGTGTTCAAAACACTAGGCACGATGCCGAAGAATCGATCAATCATCTA
GTGAACGCAAAGAAGCTGTGGATCCTTGAAGTACAAAAAGAATACCAATC
ACCGCGATACGATCAATTGAAACGAAGTCTGGACGTTTTTACAGACGCTA
ATGGTATTTGAATGGAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054917-exon-scaffold_246-1575043694:296749..297388 | TCONS_00054917-exon-scaffold_246-1575043694:296749..297388 | Clytia hemisphaerica | exon |
| TCONS_00054917-exon-scaffold_246-1575043694:294895..295793 | TCONS_00054917-exon-scaffold_246-1575043694:294895..295793 | Clytia hemisphaerica | exon |
| TCONS_00054917-exon-scaffold_246-1510915933:296749..297388 | TCONS_00054917-exon-scaffold_246-1510915933:296749..297388 | Clytia hemisphaerica | exon |
| TCONS_00054917-exon-scaffold_246-1510915933:294895..295793 | TCONS_00054917-exon-scaffold_246-1510915933:294895..295793 | Clytia hemisphaerica | exon |
| TCONS_00054917-exon-scaffold_246-1491911889:296749..297388 | TCONS_00054917-exon-scaffold_246-1491911889:296749..297388 | Clytia hemisphaerica | exon |
| TCONS_00054917-exon-scaffold_246-1491911889:294895..295793 | TCONS_00054917-exon-scaffold_246-1491911889:294895..295793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_246 | supercontig | scaffold_246:294895..297388 - |
Blast
The following BLAST results are available for this feature:
|
