TCONS_00054912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054912
Unique NameTCONS_00054912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054912 ID=TCONS_00054912|Name=TCONS_00054912|organism=Clytia hemisphaerica|type=transcript|length=1316bp
AATAATGTGAACGCCTTGAACCGGATTTAAGAGTGGAAATCCCAGCACCA
GACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAACGC
ACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGCCA
TGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACAaGATCGTCAG
CAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTGCTgc
caaaaaacaacaacaaaaagatcACGAAGAAAACAACGAACTCTTCGCAA
AACTAAAATCACGATCGCAAGCTATCGATAATGACGAGagacaaaaagaa
gaagaagctcAACGTCCAGAGTTTATGAAAGTCAAATTAAAAAGTGGTCC
AAATACTCCCATAGCGTCTTCATAGATACAAACTCATCACTTGAATTACC
CAGGATTCTCTGTTTGGCGTTGGACTGAAGATGAAACTGGCCTCAGATTG
GCTGAATTTTCCTCCCCTTGTTTTCTGTGAACGGAAATATGTCGGACAAG
ATACATGTTGGAACTTTGAAATTTCACAcatttcaaacattttgttttaa
agATGGTTTTATTTGCTCTCGCAATGGACAGAATCTTGGACAGAATCTTC
TGTTcgaatcttttgttttttagctTTATGTTGTGTTAAGCTAGGATTAA
TCACAGCTTTGAGCGCCAACGAAGCTGAAACTCTGTCGGCTAAATAATGC
GAGGAATCGATGAAAAACCAGCGGGGCACAGCTGCAGGGCACTGACCCAT
AACTGGGTGGCTCTGTCTAATTTTGATTCTCAGAAGCGATCGACCATTTC
AAGATAGTACTTGGTACTGGATTTTGGTAAATACTAAAGTAAATACCAGT
TACTAAAAAGGGGGCGGTGGTAGTTAAAACAATTCCTTCTGAAAGTACCC
TATGGATTAGTACCCTGCGGCTGTATCCTTCCCTGtgaaaaaacatgttt
tttttattctggttttttttcgaagatttaCTGTTCCATCATTGCTGAAT
AGTTTTAGTCAAGCACAGTCTAAATATTCATATGTCTATGGTCAAGTGTG
ATTCTAACGAGTTTTAAAGCACTGTTAGTCTTCGCAAACATACTTCCTAT
GTAAACCTGAGATGACAGAAGATATATTTCCCTACGAGCGTTCTCCATTT
TTGTAGATTCTTCAAAATTGTATCGATAAGATttttgtatatatattttt
tctaataaagaattaGTTTTAGTACAAAGTAAATCATTATGTAGTTTGAA
AATATCttactttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_246:127084..130775-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054912 ID=TCONS_00054912|Name=TCONS_00054912|organism=Clytia hemisphaerica|type=transcript|length=3692bp|location=Sequence derived from alignment at scaffold_246:127084..130775- (Clytia hemisphaerica)
AATAATGTGAACGCCTTGAACCGGATTTAAGAGGTGTCCGCTTTTTGATG
AAGCCTTCAACATTTGTTCCGCGTATTGAGTGTCTGCTATAGAGAGAATG
CAGGAATCTTGATGTAACTGACCAATTGAATTTATGTTGCGATGAACTCT
GGTAACCTTTTGAGTTTGTTAAAGATTATTTTTAGACTTTTTTTGTATCA
ACATCTAGAATATGAAACTTATTTGGGAGAACGTGGTTGACAAGAATTTT
TTAATCCTTCAAACTGATAAGATTATCATAGTCATAATAAAATGGGGGCC
ATTTTATTCTTGATGACGTCACAGATCTGATGAATGTATCAACCAAAACG
TCGACAAGCGATAATGTAATAAAAATATTTTCAGAATGATAAAATAGATT
TTTCTTACATAGCCTGACAGATCATTTATTGTAATTGATTTTTAAACCTT
TTTCTCATGAAATTGCTGACAAATACTTTACAAAACCTCAGATAAAGTTA
TACAAAGTCGTTTCGAGCTTTTAAAGAAAGAGTTGTAGTTTTGGACGTAA
CAACAATGGCTCAAAAACAGCATCGAGGTACTAAATCTGTTTTGTTTGTT
TAGTATCTTTCTTATAATGAAAATAGTTCCATATCCATGAGTAAAGGTTT
TAGTTCAGCCAATTTATAATCAAGGTCAAAGAAAATCTCTTCAGACAGCT
TGAGAGGAATTCCTTGGCATATTTTACGTAATTTTATTCATCATTTGATC
CGTTTTTTATTGAGGGATTTAGAATAAGTGAATGATGGGGAACACATTTT
CCAGTTGCTTTGTTTCCCATTCAGCCTCTTTTTCTTTCATATTTTATTTA
CCAGTTTATCAGTTTGAAACTTCTTCTTCAAAATAAGGAAAAAGAAAGAA
AATTTAGGAAAAGGAAATCTTTCATACAAAATTCCTTAATTATTTAAAGG
AGAGTGTGTTAGGATTTCCAAGGGATATACTTTATTATAGTCTCACCTCT
CACTATATGAGATTCACTTGATGAAAGTTTTGAATGGAAATGGATGAAAA
TCTTATAACACTTTCTTTTTCGTCTTGATGTGTTTAAATCTTATTCGTTC
TGTAAATCTTCTTCTTTGAACATGTGAATAATTAGTAGTTTCAAGTATTG
TTTGTTGTCAAGAGATTACCGGGTGATTAATCAGTAATTGGCAATTTCCT
TCTTCATCTAATTACAAGGCAGTAGAAAGATAATTAGAAGCATCCATGTA
TGTTTAAAATTCTTCGTAGCTTTACTACTCGTTTGAAGTGTTTACATGTT
TGATCAGATATTTACGAGAAAAATCAATAAGATAGAAAAGTCGAGAAGAA
TTTGATGGGAAATGATAGATCTAAATCTAACCATATTTAGTTTAGCTAAT
AGAAGAGGATTTTTATGTTGAAATTAATTTTCGATGCGTTTGTTCCTATT
TCGTAGTTTTTTAAAAGTTGCCACCGTAGGTTACATGGACATGGCAAGGC
TTCATGATGTATACTGTCATAAATTTGCCTCCAAGTTCGTCACTAAATGA
CGTTAATGATGATATAAAGGACAGCTCTTTACTTTGTGACTGCTTTTTAA
AATAATTCTTGATAAAAAGCTGGTATTTTGCTATGAATGACTTATCAGAA
TCAAAGGCAGTTTGAAATCCAGGAGTCTAATGTCATGTTTTTGGTTGTTC
TGTTGTTGTTTTTGTCATTGTATACCTGAAATAAATTTCTCATGAGAGTC
ATGTTTCTCAATGCTTTCTTTATATATCATGATTGTGAAAGATCCTTAAG
TTGAAAATTTATCAAAGTTTATTTCCAATTCATAGAGAGTATAGATGCAG
TATTTAGTTTTGTTGAGATGGTTATATTTTGTTTTGAGTGTAGATTAAAT
GTGCAACTCTGAAGCTCGATTTGATTACCTCTGCCTTGAGCCTGTATATT
GTTCTTCATAGTTCGCTATATTCTCTTATTTCAGTGGAAATCCCAGCACC
AGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAAACG
CACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGATGCC
ATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACAGTAAGTGTC
GTTTACTTATGAAATTTAAAGGAAGAAAAATATGGACAAATTTAGTAAAC
TCTAGACCCTAAATGTGTGGTTTTTGTATACTTAGAGAAACTTACAGATG
AAAAGTCTGGATGACTGCAATTTGGATTTTAGACGCTTATACCTTTGATC
TTAGGGTGGAGAATCGTTCCAATAAAATAGTGACAATAGCATATTTCTTA
CCATGAAATCTTCAAATAAACTCTTCCTTGTTTTGTTATTTTTCAGAGAT
CGTCAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAG
TGCTGCCAAAAAACAACAACAAAAAGATCACGAAGAAAACAACGAACTCT
TCGCAAAACTAAAATCACGATCGCAAGCTATCGATAATGTATGTCTTTGA
TAAATTTTCTCATCTATTTCGTAGTAAGCCTCATAAGCTATCGTATACAC
GTGTTAACTTATAAATCCCTTAAGAGACTAAAGGCACCTCATTGAAAGTG
TTAATAATCTATTTCGCATTTGAGTACCTCAACAACATTTCTCTATTCTC
ATTTTCAGGACGAGAGACAAAAAGAAGAAGAAGCTCAACGTCCAGAGTTT
ATGAAAGTCAAATTAAAAAGTGGTCCAAATACTCCCATAGCGTCTTCATA
GATACAAACTCATCACTTGAATTACCCAGGATTCTCTGTTTGGCGTTGGA
CTGAAGATGAAACTGGCCTCAGATTGGCTGAATTTTCCTCCCCTTGTTTT
CTGTGAACGGAAATATGTCGGACAAGATACATGTTGGAACTTTGAAATTT
CACACATTTCAAACATTTTGTTTTAAAGATGGTTTTATTTGCTCTCGCAA
TGGACAGAATCTTGGACAGAATCTTCTGTTCGAATCTTTTGTTTTTTAGC
TTTATGTTGTGTTAAGCTAGGATTAATCACAGCTTTGAGCGCCAACGAAG
CTGAAACTCTGTCGGCTAAATAATGCGAGGAATCGATGAAAAACCAGCGG
GGCACAGCTGCAGGGCACTGACCCATAACTGGGTGGCTCTGTCTAATTTT
GATTCTCAGAAGCGATCGACCATTTCAAGATAGTACTTGGTACTGGATTT
TGGTAAATACTAAAGTAAATACCAGTTACTAAAAAGGGGGCGGTGGTAGT
TAAAACAATTCCTTCTGAAAGTACCCTATGGATTAGTACCCTGCGGCTGT
ATCCTTCCCTGTGAAAAAACATGTTTTTTTTATTCTGGTTTTTTTTCGAA
GATTTACTGTTCCATCATTGCTGAATAGTTTTAGTCAAGCACAGTCTAAA
TATTCATATGTCTATGGTCAAGTGTGATTCTAACGAGTTTTAAAGCACTG
TTAGTCTTCGCAAACATACTTCCTATGTAAACCTGAGATGACAGAAGATA
TATTTCCCTACGAGCGTTCTCCATTTTTGTAGATTCTTCAAAATTGTATC
GATAAGATTTTTGTATATATATTTTTTCTAATAAAGAATTAGTTTTAGTA
CAAAGTAAATCATTATGTAGTTTGAAAATATCTTACTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034602XLOC_034602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054912-exon-scaffold_246-1575043694:130743..130775TCONS_00054912-exon-scaffold_246-1575043694:130743..130775Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1575043694:128635..128791TCONS_00054912-exon-scaffold_246-1575043694:128635..128791Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1575043694:128238..128379TCONS_00054912-exon-scaffold_246-1575043694:128238..128379Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1575043694:127084..128067TCONS_00054912-exon-scaffold_246-1575043694:127084..128067Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1510915933:130743..130775TCONS_00054912-exon-scaffold_246-1510915933:130743..130775Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1510915933:128635..128791TCONS_00054912-exon-scaffold_246-1510915933:128635..128791Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1510915933:128238..128379TCONS_00054912-exon-scaffold_246-1510915933:128238..128379Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1510915933:127084..128067TCONS_00054912-exon-scaffold_246-1510915933:127084..128067Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1491911889:130743..130775TCONS_00054912-exon-scaffold_246-1491911889:130743..130775Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1491911889:128635..128791TCONS_00054912-exon-scaffold_246-1491911889:128635..128791Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1491911889:128238..128379TCONS_00054912-exon-scaffold_246-1491911889:128238..128379Clytia hemisphaericaexon
TCONS_00054912-exon-scaffold_246-1491911889:127084..128067TCONS_00054912-exon-scaffold_246-1491911889:127084..128067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:127084..130775 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.00174334	0.306434	0.0656079	5.02427	7.02855	2.06033	0.445705	0	4.66246e-10	0.711796	0.679617	0.727692	0.883791	2.76451	9.1745e-07	8.83729e-10	0	1.037e-09	0	0	4.9067e-07	0.00480033	7.9518	3.83309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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