TCONS_00054798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054798
Unique NameTCONS_00054798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054798 ID=TCONS_00054798|Name=TCONS_00054798|organism=Clytia hemisphaerica|type=transcript|length=1634bp
GTCAGGTGAAAATTATGATAATTAATTTGATTAAGGAATCATTAGTATTG
AATTGGAATCATGCCTGTAACACTTGTTAAGAGTTTTGAAGAACCGTCAG
ACGATACAGTAGAGAAAGAAGATCGAGATAAAAAGACGATGGGAAAAACG
CTGTCTAAATGGATGTTCAAAAATGCTAACAGTGTGGCAGATATGTCGGA
AGACCGGGTCCAACAAGTACCCGGATCTTTAGGCTTAACCTTGTTCAATG
TGATGGGATTGGTCAAATCCGGACACCTTTTCTACCGGAACAGACGAGAT
CGaaacaaatcgaatgtttacaaggtGTCTATCTACCAGCCGAGAATCGT
TTTATGTAGTTTTGATGGCATACGACAAATGTACGAAAACACAGCCGTCC
GAAAAGAACCAAGCTTCGGAATGTTTGTCTTCAACCAGGAAATCTTAGGA
AATCACACACCTTTGATTTTCGAAAATGACGAAATACACCATCAAAGACG
TCACATTTTTATCGAACTGTCAAAGAAAATATTCTgtaacaaaaatttca
tcaacGAGCTTTCCCAAAGCATTAGTTCAGAATTAGACCACGTGATTGAT
ACAATGACATCACAACCATCGTCTGATTTCGAAGATGCATTATCTGGCGC
TGTTGGGAACGTCGTTACCAGATGCATTGTGGGAAAAACAATCGATAACG
AACTCCTTAAGAAATGGATGGATAATTGCTTgatcaagaaattcaagaaa
gcAAGAGCAGAAGGGCCTTTGGTTTATGAGAAAATACGACAATCGGTAAA
AGAAGGTCCGATTTTCCGTGAGTTTGCTGCAGGTTTAGTAAAAAAGAACG
GCTTGTTGGAGGAAGATATATGCAACGAGATCATCTTTGCTTTGATTTTC
AATGCTTATAAAGCATTACACGGGTTTGTCGTTTCCGCCCTTGTTCATTT
ATCCAACCTCTCTGAAGACAAACAGATCAAACTACAAAACGATGcctcaa
actttcaccaaagcaCCGACAAAACAACAGAATTAAATAGTGCAACTGAT
GTGGAGAATTATACACTTGAGATATTTCGCTTATTCCCGCCCGCTTCGTT
TGTGTTCCGGAGAGTGACGGAGAACTTCGTACTTCCGTTAAAATCCGGTA
ACTATCAGGTCAACAAAGACGATCTCTTGTGTGGAAACGTCTATTTGAGT
CAAAGAGATCCCGATATCTTCGACAATCCAGATAAATTAGACCCTGACCG
TTTCCAGCGACAACCACATCTCAAAGACTATTTAACATGTTTTGGCGCTC
CATTCTTACAAGACAGTGTGCCGAATATACATAAATGTGGAGGTCAAAAA
CTAGCCTTAACCTTTGCAAAGGTCTTTGTAATGCACCTTTTGACATTGAG
AATTGAGTACGACGGACAACCTTCATGGTCCGGTAAGAAAATTAAGCGAA
TCATTGGTTCAGATAAACCAGTGAGAGTGAAAGCTATACGGAAATGAATA
TAATGCATCTTAATAAGGCATACCTACGTTTGAGAGATTGAAGATTGTAT
AAAGGGAACGAAAATTGAACGTACAACGGACACCAATTTCAGATTTGCAG
GATTTGAcactttttgatttaattcGAAAAAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_245:142526..145526-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054798 ID=TCONS_00054798|Name=TCONS_00054798|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at scaffold_245:142526..145526- (Clytia hemisphaerica)
GTCAGGTGAAAATTATGATAATTAATTTGATTAAGGAATCATTAGGTAAG
ATTTAGTCTTAAATTTGATTTTGAAAGAATTATAGTACTATTTATGAGAT
ATGATTGGTTGGGTACGCAGAAAAAAAGTGATTCTTGTTGTTAATATTCA
TGGTTATTCTTTCAGGCCGTGTACTGTATCCTATCTTTAAGATAATTGTA
TTGAAAGTAGCTTCGATTACGTTCAGATTTTGGTAGTCCGCAGACAAGTT
TAGCGAAGATACTTTCTGGAAAAAGAGAGTACACATTTGATACAAGTGTT
TTGAATTCAAAGTCTTCTCCCTTGTTCATAGAACAAGAGAAACTTTCGAG
TTGAAAAAGTTAGTTTTATATAGTTGGTTATTGATACATTTGAGTCAATA
TTTAAGAAAACTAAAAACACCAGAAAGTACACAGTTACTAGTCTATAAGT
AAGTTCTCAGGTTGCTCTACTTTTTTATCTTTTGACTTGATTTTCTTGAT
TAACAGTAGTGATATTATTGTACTATTTTATCAATTTTGGTTTTTATAAA
AAGGGAAGAGGGAAGGAATTAAAGTAGACTGGAGTCGTTCATAATGCATA
GTATAGGCGTTATATGATAATATGATTATTGTTACGGGATTTAGCTGGTA
TAAAATTTGTTCACTCCATTACTTTTTGCGTTATTTCTACTATGTCTGAA
TTAGTCGTCTAGCTTGCTAGACTAGAATTAAAGAGAGTTTCTGATCGATC
GTCGGCCAAAGTACATTTTAGAGGGCAAAAAGTATTTTTGACTAAACTAA
AAGTTTTTCTTGGTAACAACTATCTATTCTCAAACATTATCATAGAGGAT
ATCTTATATTATAAAATGATAAAAGGGTTTTTATTGAGGTGTAAATTTGC
GCTTGTCGATTCAAAAATCTTAGAGATGAGGTAATCGCAAAACGAAATTT
TGTTACACAAAAATTAACACCATGCTATCAAGAATTTGAGCAAACTGCGT
GAATATTAACTAATAAGTTCCTATGGCGATCAACGAAACAACGGGAAAAC
TCAACTAAGCTGGATGCTAATTTTCTAAATCAGTTTAATTCTTTATTGAT
ATTTTTCTATTGATTTTTAGTATTGAATTGGAATCATGCCTGTAACACTT
GTTAAGAGTTTTGAAGAACCGTCAGACGATACAGTAGAGAAAGAAGATCG
AGATAAAAAGACGATGGGAAAAACGCTGTCTAAATGGATGTTCAAAAATG
CTAACAGTGTGGCAGATATGTCGGAAGACCGGGTCCAACAAGTACCCGGA
TCTTTAGGCTTAACCTTGTTCAATGTGATGGGATTGGTCAAATCCGGACA
CCTTTTCTACCGGAACAGACGAGATCGAAACAAATCGAATGTTTACAAGG
TGTCTATCTACCAGCCGAGAATCGTTTTATGTAGTTTTGATGGCATACGA
CAAATGTACGAAAACACAGCCGTCCGAAAAGAACCAAGCTTCGGAATGTT
TGTCTTCAACCAGGAAATCTTAGGAAATCACACACCTTTGATTTTCGAAA
ATGACGAAATACACCATCAAAGACGTCACATTTTTATCGAACTGTCAAAG
AAAATATTCTGTAACAAAAATTTCATCAACGAGCTTTCCCAAAGCATTAG
TTCAGAATTAGACCACGTGATTGATACAATGACATCACAACCATCGTCTG
ATTTCGAAGATGCATTATCTGGCGCTGTTGGGAACGTCGTTACCAGATGC
ATTGTGGGAAAAACAATCGATAACGAACTCCTTAAGAAATGGATGGATAA
TTGCTTGATCAAGAAATTCAAGAAAGCAAGAGCAGAAGGGCCTTTGGTTT
ATGAGAAAATACGACAATCGGTAAAAGAAGGTCCGATTTTCCGTGAGTTT
GCTGCAGGTTTAGTAAAAAAGAACGGCTTGTTGGAGGAAGATATATGCAA
CGAGATCATCTTTGCTTTGATGTGAGTATTATTTATTGGCTTTAAAGATA
GGATAGTGTCAAAATAAGCAATTACTCATATTGATATGTTTTTCATAATT
CGCCTCAGGGAATTGAGACGAAGCAACCACCCAATCAATCAAGTTAAGTA
ATCTTCTTTAAAAAGGTCTGTGTTGCATTGATAGCACTTTCAAAAATTGT
GTCTTCTAACTTATTCGTCGCATCGATTGCGATAAGGTGAAGGAATAAAG
TAGCAAAATTGGGTATTATACATGGTTTTGATGATAAAACATTCTTATTT
TTTTCTCTTCTAGTTTCAATGCTTATAAAGCATTACACGGGTTTGTCGTT
TCCGCCCTTGTTCATTTATCCAACCTCTCTGAAGACAAACAGATCAAACT
ACAAAACGATGCCTCAAACTTTCACCAAAGCACCGACAAAACAACAGAAT
TAAATAGTGCAACTGATGTGGAGAATTATACACTTGAGATATTTCGCTTA
TTCCCGCCCGCTTCGTTTGTGTTCCGGAGAGTGACGGAGAACTTCGTACT
TCCGTTAAAATCCGGTAACTATCAGGTCAACAAAGACGATCTCTTGTGTG
GAAACGTCTATTTGAGTCAAAGAGATCCCGATATCTTCGACAATCCAGAT
AAATTAGACCCTGACCGTTTCCAGCGACAACCACATCTCAAAGACTATTT
AACATGTTTTGGCGCTCCATTCTTACAAGACAGTGTGCCGAATATACATA
AATGTGGAGGTCAAAAACTAGCCTTAACCTTTGCAAAGGTCTTTGTAATG
CACCTTTTGACATTGAGAATTGAGTACGACGGACAACCTTCATGGTCCGG
TAAGAAAATTAAGCGAATCATTGGTTCAGATAAACCAGTGAGAGTGAAAG
CTATACGGAAATGAATATAATGCATCTTAATAAGGCATACCTACGTTTGA
GAGATTGAAGATTGTATAAAGGGAACGAAAATTGAACGTACAACGGACAC
CAATTTCAGATTTGCAGGATTTGACACTTTTTGATTTAATTCGAAAAAAG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034520XLOC_034520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054798-exon-scaffold_245-1575043694:145482..145526TCONS_00054798-exon-scaffold_245-1575043694:145482..145526Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1575043694:143556..144406TCONS_00054798-exon-scaffold_245-1575043694:143556..144406Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1575043694:142526..143263TCONS_00054798-exon-scaffold_245-1575043694:142526..143263Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1510915933:145482..145526TCONS_00054798-exon-scaffold_245-1510915933:145482..145526Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1510915933:143556..144406TCONS_00054798-exon-scaffold_245-1510915933:143556..144406Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1510915933:142526..143263TCONS_00054798-exon-scaffold_245-1510915933:142526..143263Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1491911889:145482..145526TCONS_00054798-exon-scaffold_245-1491911889:145482..145526Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1491911889:143556..144406TCONS_00054798-exon-scaffold_245-1491911889:143556..144406Clytia hemisphaericaexon
TCONS_00054798-exon-scaffold_245-1491911889:142526..143263TCONS_00054798-exon-scaffold_245-1491911889:142526..143263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_245supercontigscaffold_245:142526..145526 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14938	0	0	0	6.94927	3.79342	19.8596	19.7001	22.1155	52.3646	16.9281	37.3423	3.6762	1.80503	0.169646	0.0758193	4.06971	3.48419	6.09001	6.49352	1.59877	3.2584	2.58406	1.56349	4.14197	1.751	18.2228	25.2271	0.856159	1.4638
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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